BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01760.F
(978 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01760.1 68414.m00095 adenosine-deaminase family / edita... 1939 0.0
At1g02520.1 68414.m00203 multidrug resistance P-glycoprotei... 36 0.54
At5g14520.1 68418.m01702 pescadillo-related similar to pesc... 34 2.1
At4g28990.1 68417.m04143 RNA-binding protein-related contai... 34 2.1
At4g20060.1 68417.m02935 expressed protein ; expression su... 34 2.1
>At1g01760.1 68414.m00095 adenosine-deaminase family / editase family similar to
double-stranded RNA-specific editase GB:AAF69673
GI:7770275 from [Danio rerio]
Length = 978
Score = 1939 bits (978), Expect = 0.0
Identities = 978/978 (100%)
Strand = Plus / Plus
Query: 1 atggaggaggattggggaaagacagtatcagagaaggttatttcggcttacatgtctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggaggaggattggggaaagacagtatcagagaaggttatttcggcttacatgtctctc 60
Query: 61 ccgaagaagggaaaacctcagggacgtgaagtcaccgtcctctccgctttcctcgtctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccgaagaagggaaaacctcagggacgtgaagtcaccgtcctctccgctttcctcgtctct 120
Query: 121 tctccttcccaagacccgaaagtgatagcgttagggacggggaccaagtgcgttagtggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctccttcccaagacccgaaagtgatagcgttagggacggggaccaagtgcgttagtggg 180
Query: 181 tcgctgctgagtccccgtggggacattgtgaacgattctcatgccgaagttgtcgccaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcgctgctgagtccccgtggggacattgtgaacgattctcatgccgaagttgtcgccaga 240
Query: 241 agagctctcatcaggttcttctattccgagattcagcggatgcaattgacttcaggtaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agagctctcatcaggttcttctattccgagattcagcggatgcaattgacttcaggtaag 300
Query: 301 aagtcagcagattcaagctgtcctggagaagtcaaatataagctcaaatctgggtgcctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagtcagcagattcaagctgtcctggagaagtcaaatataagctcaaatctgggtgcctc 360
Query: 361 ttgcatttgtacatttctcaattgccatgtaatttaccttcaattttagatgactcattg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttgcatttgtacatttctcaattgccatgtaatttaccttcaattttagatgactcattg 420
Query: 421 ttagttcaagcttctgatatttgctcgtctcggcattctgatgttccagagataggtagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttagttcaagcttctgatatttgctcgtctcggcattctgatgttccagagataggtagt 480
Query: 481 aatagcaacaaaggtaatggctcacaagtagcagatatggtgcaaagaaagcctggtcgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatagcaacaaaggtaatggctcacaagtagcagatatggtgcaaagaaagcctggtcgc 540
Query: 541 ggtgaaacaacactctctgttagctgttcggataagatagctcgatggaatgttcttgga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggtgaaacaacactctctgttagctgttcggataagatagctcgatggaatgttcttgga 600
Query: 601 gttcaaggggcattgctttaccaagtcctccagcctgtgtatatttctaccatcaccgtt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gttcaaggggcattgctttaccaagtcctccagcctgtgtatatttctaccatcaccgtt 660
Query: 661 ggacaatctctgcacagtcctgacaatttttctttagctgatcacttgcgaagatctttg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggacaatctctgcacagtcctgacaatttttctttagctgatcacttgcgaagatctttg 720
Query: 721 tatgagaggatcctcccattatcggatgaacttctgacttccttccgtttgaacaagcca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tatgagaggatcctcccattatcggatgaacttctgacttccttccgtttgaacaagcca 780
Query: 781 ctgttttttgtagctccagtaccaccatcagagtttcagcattcagaaactgcgcaagct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ctgttttttgtagctccagtaccaccatcagagtttcagcattcagaaactgcgcaagct 840
Query: 841 actttaacatgcggatattccttgtgttggaactattctggcttacacgaagttattctt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 actttaacatgcggatattccttgtgttggaactattctggcttacacgaagttattctt 900
Query: 901 ggaacaaccggtagaaagcaaggcacatcagctaaaggagctctgtatccgtctactcaa 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ggaacaaccggtagaaagcaaggcacatcagctaaaggagctctgtatccgtctactcaa 960
Query: 961 tcatctatatgcaagtaa 978
||||||||||||||||||
Sbjct: 961 tcatctatatgcaagtaa 978
>At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein, putative similar
to multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 3837
Score = 36.2 bits (18), Expect = 0.54
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 107 ctttcctcgtctcttctccttc 128
||||| ||||||||||||||||
Sbjct: 91 ctttcttcgtctcttctccttc 70
>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo [Zebrafish,
Danio rerio] SWISS-PROT:P79741
Length = 1773
Score = 34.2 bits (17), Expect = 2.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 119 cttctccttcccaagac 135
|||||||||||||||||
Sbjct: 1108 cttctccttcccaagac 1092
>At4g28990.1 68417.m04143 RNA-binding protein-related contains weak similarity
to Swiss-Prot:Q01844 RNA-binding protein EWS (EWS
oncogene)(Ewing sarcoma breakpoint region 1 protein)
[Homo sapiens]
Length = 1254
Score = 34.2 bits (17), Expect = 2.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 355 tgcctcttgcatttgta 371
|||||||||||||||||
Sbjct: 599 tgcctcttgcatttgta 583
>At4g20060.1 68417.m02935 expressed protein ; expression supported by MPSS
Length = 3405
Score = 34.2 bits (17), Expect = 2.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 238 agaagagctctcatcag 254
|||||||||||||||||
Sbjct: 972 agaagagctctcatcag 988
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,653
Number of Sequences: 29161
Number of extensions: 26653
Number of successful extensions: 585
Number of sequences better than 10.0: 35
length of query: 978
length of database: 44,058,232
effective HSP length: 18
effective length of query: 960
effective length of database: 43,533,334
effective search space: 41792000640
effective search space used: 41792000640
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)