BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01130.F
(501 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01130.1 68414.m00016 expressed protein ; expression sup... 904 0.0
At5g47170.1 68418.m05815 hypothetical protein similar to un... 167 1e-40
At1g01140.2 68414.m00019 CBL-interacting protein kinase 9 (... 157 1e-37
At1g01140.1 68414.m00018 CBL-interacting protein kinase 9 (... 157 1e-37
At1g01140.3 68414.m00020 CBL-interacting protein kinase 9 (... 113 1e-24
>At1g01130.1 68414.m00016 expressed protein ; expression supported by MPSS
Length = 543
Score = 904 bits (456), Expect = 0.0
Identities = 456/456 (100%)
Strand = Plus / Plus
Query: 1 atggagaaacgttcagattcagagagtgtagagattttgggtgattgggattcacctcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggagaaacgttcagattcagagagtgtagagattttgggtgattgggattcacctcct 60
Query: 61 ccggaagaaagaatcgtaatggtttctgttcccacttcaccagaatctgattacgcgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccggaagaaagaatcgtaatggtttctgttcccacttcaccagaatctgattacgcgaga 120
Query: 121 tcgaatcaaccgaaagagatcgaatctagggtttcagacaaggaaacagcgtcggcatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcgaatcaaccgaaagagatcgaatctagggtttcagacaaggaaacagcgtcggcatcc 180
Query: 181 ggagaagtggctgcgaggagggtgttgccgccgtggatggatccgtcgtatgaatggggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggagaagtggctgcgaggagggtgttgccgccgtggatggatccgtcgtatgaatggggt 240
Query: 241 ggtggcaaatggaaagtagacggaagaaagaacaagaacaagaaagagaaagagaaagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggtggcaaatggaaagtagacggaagaaagaacaagaacaagaaagagaaagagaaagag 300
Query: 301 aaagaagagattattccttttaaagaaataattgaagctctccttggaaactccggtgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaagaagagattattccttttaaagaaataattgaagctctccttggaaactccggtgac 360
Query: 361 aaggttcaacaagacaacaaggtgtttgaagtggcaccatcgttgcacgtggtagagctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaggttcaacaagacaacaaggtgtttgaagtggcaccatcgttgcacgtggtagagctt 420
Query: 421 aggaaaaccggcgatgataccctcgagtttcacaag 456
||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggaaaaccggcgatgataccctcgagtttcacaag 456
>At5g47170.1 68418.m05815 hypothetical protein similar to unknown protein (gb
AAF26469.1)
Length = 453
Score = 167 bits (84), Expect = 1e-40
Identities = 151/174 (86%), Gaps = 12/174 (6%)
Strand = Plus / Plus
Query: 193 gcgaggagggtgttgccgccgtggatggatccgtcgtatgaatggggtggtggcaaatgg 252
|||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct: 211 gcgaggagagtgttgccgccgtggatggagccgtcgtacgaatggggtggtgggaaatgg 270
Query: 253 aaagtagacggaagaaagaacaagaacaagaaagagaaagagaaagagaaagaagagatt 312
|||| ||| ||||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 271 aaagaagatggaagaaagaagaagaa------agag------aaagagaaagaagagatt 318
Query: 313 attccttttaaagaaataattgaagctctccttggaaactccggtgacaaggtt 366
|| |||||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct: 319 ataccttttaaagaaatcattgaagctctgcttcgaaactccggtgacaaggtt 372
Score = 117 bits (59), Expect = 9e-26
Identities = 142/171 (83%), Gaps = 9/171 (5%)
Strand = Plus / Plus
Query: 1 atggagaaacgttcagattcagagagtgtagagattttgggtgattgggattcacctcct 60
|||||||||||||||||| |||||||| ||||||||| | |||||| ||| | |||||
Sbjct: 1 atggagaaacgttcagatacagagagttcagagattttagaagattggcatttatctcct 60
Query: 61 ---------ccggaagaaagaatcgtaatggtttctgttcccacttcaccagaatctgat 111
||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 61 cccgtgaatccggaagaaggaatcgtaatggtttctgttcccacttcaccagagtctgac 120
Query: 112 tacgcgagatcgaatcaaccgaaagagatcgaatctagggtttcagacaag 162
| ||||||| ||||| ||| |||||||| ||| |||||||||| ||||||
Sbjct: 121 gatgcgagattgaatccaccaaaagagattgaaactagggtttcggacaag 171
>At1g01140.2 68414.m00019 CBL-interacting protein kinase 9 (CIPK9) identical to
CBL-interacting protein kinase 9 [Arabidopsis thaliana]
gi|13249117|gb|AAK16684; contains Pfam profiles PF00069:
Protein kinase domain and PF03822: NAF domain; identical
to cDNA CBL-interacting protein kinase 9 (CIPK9)
GI:13249116
Length = 1694
Score = 157 bits (79), Expect = 1e-37
Identities = 115/127 (90%), Gaps = 5/127 (3%)
Strand = Plus / Plus
Query: 380 aggtgtttgaagtggcaccatcgttgcacgtggtagagcttaggaaaaccggcgatgata 439
|||||||||||||||| ||||| ||||| ||||||||||||||||||||||| | |||||
Sbjct: 1309 aggtgtttgaagtggcgccatcattgcatgtggtagagcttaggaaaaccggtggtgata 1368
Query: 440 ccctcgagtttcacaagttctacaaaaa-----catctggattggaggatgtagtctgga 494
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1369 ccctcgagtttcacaagttctacaaaaacttctcatctggattaaaggatgtagtctgga 1428
Query: 495 atactga 501
|||||||
Sbjct: 1429 atactga 1435
>At1g01140.1 68414.m00018 CBL-interacting protein kinase 9 (CIPK9) identical to
CBL-interacting protein kinase 9 [Arabidopsis thaliana]
gi|13249117|gb|AAK16684; contains Pfam profiles PF00069:
Protein kinase domain and PF03822: NAF domain; identical
to cDNA CBL-interacting protein kinase 9 (CIPK9)
GI:13249116
Length = 1688
Score = 157 bits (79), Expect = 1e-37
Identities = 115/127 (90%), Gaps = 5/127 (3%)
Strand = Plus / Plus
Query: 380 aggtgtttgaagtggcaccatcgttgcacgtggtagagcttaggaaaaccggcgatgata 439
|||||||||||||||| ||||| ||||| ||||||||||||||||||||||| | |||||
Sbjct: 1303 aggtgtttgaagtggcgccatcattgcatgtggtagagcttaggaaaaccggtggtgata 1362
Query: 440 ccctcgagtttcacaagttctacaaaaa-----catctggattggaggatgtagtctgga 494
|||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1363 ccctcgagtttcacaagttctacaaaaacttctcatctggattaaaggatgtagtctgga 1422
Query: 495 atactga 501
|||||||
Sbjct: 1423 atactga 1429
>At1g01140.3 68414.m00020 CBL-interacting protein kinase 9 (CIPK9) identical to
CBL-interacting protein kinase 9 [Arabidopsis thaliana]
gi|13249117|gb|AAK16684; contains Pfam profiles PF00069:
Protein kinase domain and PF03822: NAF domain; identical
to cDNA CBL-interacting protein kinase 9 (CIPK9)
GI:13249116
Length = 1700
Score = 113 bits (57), Expect = 1e-24
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 380 aggtgtttgaagtggcaccatcgttgcacgtggtagagcttaggaaaaccggcgatgata 439
|||||||||||||||| ||||| ||||| ||||||||||||||||||||||| | |||||
Sbjct: 1303 aggtgtttgaagtggcgccatcattgcatgtggtagagcttaggaaaaccggtggtgata 1362
Query: 440 ccctcgagtttcacaag 456
|||||||||||||||||
Sbjct: 1363 ccctcgagtttcacaag 1379
Score = 52.0 bits (26), Expect = 5e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 468 catctggattggaggatgtagtctggaatactga 501
|||||||||| ||||||||||||||||||||||
Sbjct: 1408 catctggattaaaggatgtagtctggaatactga 1441
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,316
Number of Sequences: 29161
Number of extensions: 25316
Number of successful extensions: 3162
Number of sequences better than 10.0: 211
length of query: 501
length of database: 44,058,232
effective HSP length: 17
effective length of query: 484
effective length of database: 43,562,495
effective search space: 21084247580
effective search space used: 21084247580
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)