BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01660.F
(1707 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01660.1 68414.m00084 U-box domain-containing protein 3384 0.0
At1g01670.1 68414.m00085 U-box domain-containing protein 58 3e-07
At2g45920.1 68415.m05710 U-box domain-containing protein co... 54 4e-06
At1g42550.1 68414.m04906 expressed protein 40 0.061
At1g01680.1 68414.m00086 U-box domain-containing protein 40 0.061
>At1g01660.1 68414.m00084 U-box domain-containing protein
Length = 1707
Score = 3384 bits (1707), Expect = 0.0
Identities = 1707/1707 (100%)
Strand = Plus / Plus
Query: 1 atggcggaactcatggccatgggcaatgatgttgttcatgttgcagtgaagagtgatgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggcggaactcatggccatgggcaatgatgttgttcatgttgcagtgaagagtgatgtc 60
Query: 61 agagagagcagatcaactcttctttgggctttgaggaacctcggggctaagaaagtctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agagagagcagatcaactcttctttgggctttgaggaacctcggggctaagaaagtctgc 120
Query: 121 atcctccatgtttatcagccaaaaacagcttctccggctgctcgcaagcttgaagaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcctccatgtttatcagccaaaaacagcttctccggctgctcgcaagcttgaagaattg 180
Query: 181 gaggctatcatgtacgagacattacatgattattttgatttttgtcaacaagaaggggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaggctatcatgtacgagacattacatgattattttgatttttgtcaacaagaaggggtg 240
Query: 241 aatgaggacgatatttacatatcatgtatagagatgaacgatgtgaagcaggggatacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatgaggacgatatttacatatcatgtatagagatgaacgatgtgaagcaggggatacta 300
Query: 301 gaactcatccatgagagcaaaatcaagaagctcgtcatgggagctgcatcagatcatcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaactcatccatgagagcaaaatcaagaagctcgtcatgggagctgcatcagatcatcat 360
Query: 361 tattcagagaagatgttcgatctcaaatcaagaaaggcaaagtatgtttaccaacacgcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tattcagagaagatgttcgatctcaaatcaagaaaggcaaagtatgtttaccaacacgcg 420
Query: 421 cccagctcgtgcgaggttatgtttatgtgtgatggacatctcatctacacaaaggaagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cccagctcgtgcgaggttatgtttatgtgtgatggacatctcatctacacaaaggaagcc 480
Query: 481 aatcttgaagactgtatgggtgaaacagaatccgaagctggacaatccaaaccgaagctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatcttgaagactgtatgggtgaaacagaatccgaagctggacaatccaaaccgaagctc 540
Query: 541 tattcctctgcttcaccgaaatgctctgcagaattagtctctgcaattgtagcttacatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tattcctctgcttcaccgaaatgctctgcagaattagtctctgcaattgtagcttacatt 600
Query: 601 gacacaaggagagacagagatatgttggagccaaatgcatcagaggatcaatctgaaagc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gacacaaggagagacagagatatgttggagccaaatgcatcagaggatcaatctgaaagc 660
Query: 661 gacaggaatgatcaactgtatagacagcttaagcaagcacttatggaagttgaggaatcg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gacaggaatgatcaactgtatagacagcttaagcaagcacttatggaagttgaggaatcg 720
Query: 721 aaaagggaagcttacgaagaatgtgtcaggcggtttaaagctgaaaatacagccgttgag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aaaagggaagcttacgaagaatgtgtcaggcggtttaaagctgaaaatacagccgttgag 780
Query: 781 gccattcgcagtgcaagagagtacgaggccatgtacaacgaagaggcgaagctaaggaaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gccattcgcagtgcaagagagtacgaggccatgtacaacgaagaggcgaagctaaggaaa 840
Query: 841 gaaggtaaagaagcattagcgaagcagaggaaaatggtggagaagactaaacaagagagg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaaggtaaagaagcattagcgaagcagaggaaaatggtggagaagactaaacaagagagg 900
Query: 901 gacgacgcgctaatcatcattctaaatggaaggaagctatacaatgaggaactgagacgc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gacgacgcgctaatcatcattctaaatggaaggaagctatacaatgaggaactgagacgc 960
Query: 961 agagttgaagctgaagagatgttggggaaagagaaagaagaacacgagagaactaagaag 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 agagttgaagctgaagagatgttggggaaagagaaagaagaacacgagagaactaagaag 1020
Query: 1021 gagatcgaagaagtgcgagccattgttcaggatggtactctgtacaacgagcagctgaga 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gagatcgaagaagtgcgagccattgttcaggatggtactctgtacaacgagcagctgaga 1080
Query: 1081 cataggaaagagatggaggaatctatgaagagacaagaggaagagcttgagaagacaaag 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 cataggaaagagatggaggaatctatgaagagacaagaggaagagcttgagaagacaaag 1140
Query: 1141 aaggagaaggaagaagcgtgcatgataagcaagaacttgatgcagctatatgaagacgag 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 aaggagaaggaagaagcgtgcatgataagcaagaacttgatgcagctatatgaagacgag 1200
Query: 1201 gtgaggcagaggaaagaggcagaggagttggtgaagagaagaagagaggagctagagaaa 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gtgaggcagaggaaagaggcagaggagttggtgaagagaagaagagaggagctagagaaa 1260
Query: 1261 gtgaagaaggagaaggaagaagcttgctctgtaggacaaaacttcatgaggttgtatgaa 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 gtgaagaaggagaaggaagaagcttgctctgtaggacaaaacttcatgaggttgtatgaa 1320
Query: 1321 gaagaagcaagacgtagaaaaggaacagaggaagaactcagcaaggtggcggctgagaaa 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 gaagaagcaagacgtagaaaaggaacagaggaagaactcagcaaggtggcggctgagaaa 1380
Query: 1381 gacgcagcgagctcagtctgttcggagattctattactccttcagagttacactcgtcgc 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 gacgcagcgagctcagtctgttcggagattctattactccttcagagttacactcgtcgc 1440
Query: 1441 catggaactccttctggattctccgatgaggattccgttacacgccagcctccctcatat 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 catggaactccttctggattctccgatgaggattccgttacacgccagcctccctcatat 1500
Query: 1501 ttcatatgtcctatctcacaggaagtaatgcgagagcctcgtgttgcagccgatggtttc 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 ttcatatgtcctatctcacaggaagtaatgcgagagcctcgtgttgcagccgatggtttc 1560
Query: 1561 acctatgaagctgaatctttaagagaatggctcgataatggtcacgagacctcaccaatg 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 acctatgaagctgaatctttaagagaatggctcgataatggtcacgagacctcaccaatg 1620
Query: 1621 acaaacctgaagctcgcccacaacaaccttgtcccgaatcacgcccttcgttccgcgatt 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 acaaacctgaagctcgcccacaacaaccttgtcccgaatcacgcccttcgttccgcgatt 1680
Query: 1681 caggagtggctacaacgaaactcttga 1707
|||||||||||||||||||||||||||
Sbjct: 1681 caggagtggctacaacgaaactcttga 1707
>At1g01670.1 68414.m00085 U-box domain-containing protein
Length = 1410
Score = 58.0 bits (29), Expect = 3e-07
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 1487 agcctccctcatatttcatatgtcctatctcacaggaagtaatgcgagagcctcgtgttg 1546
|||||||| || |||||||||||| || ||| |||| | |||| | | |||| |||||
Sbjct: 1091 agcctccccaatgtttcatatgtcccatttcaaaggatattatgcaaaatcctcatgttg 1150
Query: 1547 cagccgatggtttcacctatgaagc 1571
|||||||||||| ||||||||||||
Sbjct: 1151 cagccgatggttacacctatgaagc 1175
>At2g45920.1 68415.m05710 U-box domain-containing protein contains Pfam profile
PF04564: U-box domain
Length = 1557
Score = 54.0 bits (27), Expect = 4e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 323 tcaagaagctcgtcatgggagctgcatcaga 353
||||||||||||||||||||||||| |||||
Sbjct: 447 tcaagaagctcgtcatgggagctgcgtcaga 477
>At1g42550.1 68414.m04906 expressed protein
Length = 2466
Score = 40.1 bits (20), Expect = 0.061
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1263 gaagaaggagaaggaagaag 1282
||||||||||||||||||||
Sbjct: 2137 gaagaaggagaaggaagaag 2156
Score = 38.2 bits (19), Expect = 0.24
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1138 aagaaggagaaggaagaag 1156
|||||||||||||||||||
Sbjct: 2138 aagaaggagaaggaagaag 2156
>At1g01680.1 68414.m00086 U-box domain-containing protein
Length = 965
Score = 40.1 bits (20), Expect = 0.061
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 1526 taatgcgagagcctcgtgttgcagccgatggtttcaccta 1565
|||||||||| |||| ||| || || ||||||||||||||
Sbjct: 772 taatgcgagatcctcatgtggctgctgatggtttcaccta 811
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,852
Number of Sequences: 29161
Number of extensions: 80852
Number of successful extensions: 2564
Number of sequences better than 10.0: 100
length of query: 1707
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1689
effective length of database: 43,533,334
effective search space: 73527801126
effective search space used: 73527801126
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)