BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01570.F
(1437 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01570.1 68414.m00074 fringe-related protein + similar t... 2849 0.0
At4g00300.1 68417.m00037 fringe-related protein + weak simi... 321 9e-87
At4g11350.1 68417.m01831 fringe-related protein various hyp... 80 6e-14
At5g41460.1 68418.m05035 fringe-related protein strong simi... 74 4e-12
At4g23490.1 68417.m03384 fringe-related protein + weak sim... 70 6e-11
>At1g01570.1 68414.m00074 fringe-related protein + similar to hypothetical protein
GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
Fringe [Schistocerca gregaria](GI:6573138);Fringe encodes
an extracellular protein that regulates Notch signalling.
Length = 1437
Score = 2849 bits (1437), Expect = 0.0
Identities = 1437/1437 (100%)
Strand = Plus / Plus
Query: 1 atgtcgaggctaatcttcttaattctcgccattctcttctctcttcaattcgttttctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtcgaggctaatcttcttaattctcgccattctcttctctcttcaattcgttttctac 60
Query: 61 cctttaaatttcatctcctcttcttctcaacctctgatcaaattctctgtttcacccgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctttaaatttcatctcctcttcttctcaacctctgatcaaattctctgtttcacccgtc 120
Query: 121 gtatccggatccgggtcggttcatgaaccggaccaaaccgaactcaagcacgtcgttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtatccggatccgggtcggttcatgaaccggaccaaaccgaactcaagcacgtcgttttc 180
Query: 181 ggaatcgccgcctctgcgaaattctggaaacaccgtaaagactacgtgaagctctggtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggaatcgccgcctctgcgaaattctggaaacaccgtaaagactacgtgaagctctggtgg 240
Query: 241 aaaccaaacggtgaaatgaacggcgtcgtttggttagaccaacacattaaccaaaacgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaccaaacggtgaaatgaacggcgtcgtttggttagaccaacacattaaccaaaacgac 300
Query: 301 aacgtttcgaaaacattacctccgatcagaatctcctccgacacgtctaggtttcagtac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aacgtttcgaaaacattacctccgatcagaatctcctccgacacgtctaggtttcagtac 360
Query: 361 agatacccaaagggtctccgatcggcgatcagaatcacgagaatcgtctcggagacggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agatacccaaagggtctccgatcggcgatcagaatcacgagaatcgtctcggagacggtg 420
Query: 421 aggctgttgaacggaacagagttggagaaaaacgtgaggtggattgtgatgggagacgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggctgttgaacggaacagagttggagaaaaacgtgaggtggattgtgatgggagacgac 480
Query: 481 gacactgtgtttttcccggagaatcttgtcaaggttttgagaaagtacgatcacaatcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gacactgtgtttttcccggagaatcttgtcaaggttttgagaaagtacgatcacaatcag 540
Query: 541 ttttattacatcggaagctcgtcggagagtcatatacagaatctcaagttctcttacggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttttattacatcggaagctcgtcggagagtcatatacagaatctcaagttctcttacggg 600
Query: 601 atggcttatggaggaggagggttcgcgattagctatccgttggctaaagcattagagaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atggcttatggaggaggagggttcgcgattagctatccgttggctaaagcattagagaaa 660
Query: 661 atgcaagatcgttgtattcagagatattcggaattgtacggctccgatgatcggattcat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atgcaagatcgttgtattcagagatattcggaattgtacggctccgatgatcggattcat 720
Query: 721 gcttgtatgtcggaactcggtgttcctttgactaaggaagttggcttccatcagattgat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gcttgtatgtcggaactcggtgttcctttgactaaggaagttggcttccatcagattgat 780
Query: 781 ttatacgggaaacttctgggcctattatcggcccatccactggctcctctagtatcgatc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttatacgggaaacttctgggcctattatcggcccatccactggctcctctagtatcgatc 840
Query: 841 caccatttagacttagtggatccagtattcccaaacatgggccgagtcaacgccatgaga 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 caccatttagacttagtggatccagtattcccaaacatgggccgagtcaacgccatgaga 900
Query: 901 cgtttcatggtccccgcaaaactcgactcaccgagcctcgcgcagcaatcaatctgctac 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 cgtttcatggtccccgcaaaactcgactcaccgagcctcgcgcagcaatcaatctgctac 960
Query: 961 gacgcggaccaccgatggaccgtgtctgtctcgtggggatacacagtccagatcatacgt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gacgcggaccaccgatggaccgtgtctgtctcgtggggatacacagtccagatcatacgt 1020
Query: 1021 ggcgtgttgtcagctagagagatggtgatccccacgcgcacgttcatcgattggtacaaa 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ggcgtgttgtcagctagagagatggtgatccccacgcgcacgttcatcgattggtacaaa 1080
Query: 1081 caggcagacgaaagaagctatgcttttaacacgcgtcctatcgccaaaagcgcgtgtcag 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 caggcagacgaaagaagctatgcttttaacacgcgtcctatcgccaaaagcgcgtgtcag 1140
Query: 1141 cgtccgcgagtgtattacctgtccaacgcgcttcctgacttggctttgcgtagaactgct 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 cgtccgcgagtgtattacctgtccaacgcgcttcctgacttggctttgcgtagaactgct 1200
Query: 1201 agtgaatacgtgagatggtacgacatgtgggagcctgaatgtgactgggatatgtcggat 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 agtgaatacgtgagatggtacgacatgtgggagcctgaatgtgactgggatatgtcggat 1260
Query: 1261 ccttcggaatttgaacgggtcattgtttataagaaacccgacccggatagatggaataaa 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ccttcggaatttgaacgggtcattgtttataagaaacccgacccggatagatggaataaa 1320
Query: 1321 catagggctccgagaagagattgttgtagagtattgcccacgacgaagaatgggactatg 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 catagggctccgagaagagattgttgtagagtattgcccacgacgaagaatgggactatg 1380
Query: 1381 gtaatcgatgtaggagcttgtaaagatgatgaatttgctgaattccttgtcaaatag 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 gtaatcgatgtaggagcttgtaaagatgatgaatttgctgaattccttgtcaaatag 1437
>At4g00300.1 68417.m00037 fringe-related protein + weak similarity to Fringe
[Schistocerca gregaria](GI:6573138);Fringe encodes an
extracellular protein that regulates Notch signalling.
Length = 2563
Score = 321 bits (162), Expect = 9e-87
Identities = 465/561 (82%), Gaps = 5/561 (0%)
Strand = Plus / Plus
Query: 319 cctccgatcagaatctcctccgacacgtctaggtttcagtacagatacccaaagggtctc 378
|||| |||||||||||| ||||||||||| || || ||||| | |||| || |||| |
Sbjct: 394 cctcagatcagaatctcttccgacacgtcgagtttcaagtaccgttaccgtaacggtcac 453
Query: 379 cgatcggcgatcagaatcacgagaatcgtctcggagacggtgaggctgttgaacggaaca 438
|||| |||||||| |||||||||||||| || |||||||||||| |||| ||||||||
Sbjct: 454 agatcagcgatcaggatcacgagaatcgtgtccgagacggtgaggatgttaaacggaacg 513
Query: 439 gagttggagaaaaacgtgaggtggattgtgatgggagacgacgacactgtgtttttcccg 498
|| ||||| ||||||||||||| |||||||||| |||||||| || ||||||||| ||
Sbjct: 514 gaagcggagagaaacgtgaggtgggttgtgatgggtgacgacgataccgtgtttttcacg 573
Query: 499 gagaatcttgtcaaggttttgagaaagtacgatcacaatcagttttattacatcggaagc 558
|| |||||||| | ||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 574 gaaaatcttgttagggttttgagaaagtacgatcataaacagttttattacatcgg-agc 632
Query: 559 t-cgtcggagagtcatatacagaatc-tca--agttctcttacgggatggcttatggagg 614
| |||| ||||||||| | ||||||| ||| |||| ||||| || ||||| || || ||
Sbjct: 633 tccgtccgagagtcatttgcagaatcttcatcagttttcttatggaatggcgtacggtgg 692
Query: 615 aggagggttcgcgattagctatccgttggctaaagcattagagaaaatgcaagatcgttg 674
||||||||| || || || ||||| || || || | || ||||| ||||||||||| ||
Sbjct: 693 aggagggtttgctataagttatccattagccaaggttttggagaagatgcaagatcggtg 752
Query: 675 tattcagagatattcggaattgtacggctccgatgatcggattcatgcttgtatgtcgga 734
||| ||||||| || || |||||||| ||||||||||||||||||||||||||| | ||
Sbjct: 753 tatcgagagatactccgatttgtacggatccgatgatcggattcatgcttgtatggctga 812
Query: 735 actcggtgttcctttgactaaggaagttggcttccatcagattgatttatacgggaaact 794
|| ||||||||| | ||||| |||||||| ||||||||| ||||| |||||||||| ||
Sbjct: 813 gcttggtgttcctctcactaaagaagttggattccatcagtttgatgtatacgggaatct 872
Query: 795 tctgggcctattatcggcccatccactggctcctctagtatcgatccaccatttagactt 854
| || |||||||| | |||||||| || || ||||||| ||||| || ||||| |
Sbjct: 873 cttagggctattatctgtccatccacaagcaccaatagtatcaatccatcacctagacgt 932
Query: 855 agtggatccagtattcccaaa 875
||||||||| ||||||||||
Sbjct: 933 agtggatcctatattcccaaa 953
Score = 38.2 bits (19), Expect = 0.20
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 989 tctcgtggggatacacagt 1007
|||||||||||||||||||
Sbjct: 1067 tctcgtggggatacacagt 1085
Score = 38.2 bits (19), Expect = 0.20
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 235 tggtggaaaccaaacggtgaaatgaacggcgtcgtttgg 273
||||||||||| ||||| | |||||||||| |||||||
Sbjct: 310 tggtggaaacctaacggagtcatgaacggcgccgtttgg 348
>At4g11350.1 68417.m01831 fringe-related protein various hypothetical proteins
from Arabidopsis thaliana strong similarity to unknown
protein (pir||T13026) similarity to predicted proteins +
similar to hypothetical protein GB:AAC23643 [Arabidopsis
thaliana] + weak similarity to Fringe [Schistocerca
gregaria](GI:6573138);Fringe encodes an extracellular
protein that regulates Notch signalling.
Length = 1470
Score = 79.8 bits (40), Expect = 6e-14
Identities = 138/168 (82%), Gaps = 2/168 (1%)
Strand = Plus / Plus
Query: 589 ttctcttacgggatggcttatggaggaggagggttcgcgattagctatccgttggctaaa 648
|||||||| || ||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 637 ttctcttatggaatggcttatggtggaggaggttttgcgattagttatccattggctgtg 696
Query: 649 gcattagagaaa-atgcaagatcgttgtattcagagatattcggaattgtacggctccga 707
|| || ||| || |||||||||| ||||||||||| ||| ||| ||||| || || ||
Sbjct: 697 gcttt-gagtaagatgcaagatcagtgtattcagaggtatccggctttgtatggttctga 755
Query: 708 tgatcggattcatgcttgtatgtcggaactcggtgttcctttgactaa 755
||||||||| || ||||||||| | || || |||||||| ||||||||
Sbjct: 756 tgatcggatgcaagcttgtatggctgagcttggtgttccattgactaa 803
>At5g41460.1 68418.m05035 fringe-related protein strong similarity to unknown
protein (pir||T13026) similarity to predicted proteins +
similar to hypothetical protein GB:AAC23643 [Arabidopsis
thaliana] + weak similarity to Fringe [Schistocerca
gregaria](GI:6573138);Fringe encodes an extracellular
protein that regulates Notch signalling.
Length = 1745
Score = 73.8 bits (37), Expect = 4e-12
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 658 aaaatgcaagatcgttgtattcagagatattcggaattgtacggctccgatgatcggatt 717
|||||||||||||| |||||| | || ||| ||| |||||||| ||||||||||||||
Sbjct: 858 aaaatgcaagatcggtgtattaaaaggtatccggcgttgtacggttccgatgatcggatg 917
Query: 718 catgcttgtatgtcggaactcggtgttcc 746
|| ||||| ||| | ||||||||||||||
Sbjct: 918 caagcttgcatggctgaactcggtgttcc 946
Score = 56.0 bits (28), Expect = 9e-07
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 469 atgggagacgacgacactgtgtttttcccggagaatcttgtcaaggttttgagaaagtac 528
||||||||||| || || || ||| || | |||||||| ||| ||||||||||| |||
Sbjct: 669 atgggagacgatgatacagtctttgtcgccgagaatctaatcagagttttgagaaaatac 728
Query: 529 gatcacaatcagttttattacatcggaagctcgtcggagagtcatatacagaatctcaag 588
||||| ||||| | ||||||||||| || | |||||||||||| | ||||| | |
Sbjct: 729 gatcataatcaaatgtattacatcggcagtttatcggagagtcatcttcagaacatttat 788
Query: 589 ttctcttacgggatggcttatggaggaggagg 620
|||||||| || ||||||||||| || |||||
Sbjct: 789 ttctcttatggaatggcttatggcggtggagg 820
Score = 36.2 bits (18), Expect = 0.80
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 1279 gtcattgtttataagaaacccgaccc 1304
||||||||||| |||||||| |||||
Sbjct: 1476 gtcattgtttacaagaaaccggaccc 1501
>At4g23490.1 68417.m03384 fringe-related protein + weak similarity to Fringe
[Schistocerca gregaria](GI:6573138);Fringe encodes an
extracellular protein that regulates Notch signalling.
Length = 1998
Score = 69.9 bits (35), Expect = 6e-11
Identities = 121/147 (82%), Gaps = 2/147 (1%)
Strand = Plus / Plus
Query: 601 atggcttatggaggaggagggttcgcgattagctatccgttggctaaagcattagagaaa 660
||||||||||| ||||| || || || || |||||||| ||||||||||| || ||| ||
Sbjct: 1029 atggcttatggtggaggtggatttgctataagctatccattggctaaagcttt-gagtaa 1087
Query: 661 -atgcaagatcgttgtattcagagatattcggaattgtacggctccgatgatcggattca 719
||||||||||| ||||| ||||| ||| | | |||||| || || |||||||| || ||
Sbjct: 1088 gatgcaagatcggtgtatacagaggtatcctgcattgtatggatcagatgatcgcatgca 1147
Query: 720 tgcttgtatgtcggaactcggtgttcc 746
||||||||| | ||||| ||||||||
Sbjct: 1148 agcttgtatggctgaacttggtgttcc 1174
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,815
Number of Sequences: 29161
Number of extensions: 42815
Number of successful extensions: 1076
Number of sequences better than 10.0: 45
length of query: 1437
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1419
effective length of database: 43,533,334
effective search space: 61773800946
effective search space used: 61773800946
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)