BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01530.F
(744 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01530.1 68414.m00069 MADS-box protein (AGL28) similar t... 1475 0.0
At1g65360.1 68414.m07414 MADS-box protein (AGL23) similar t... 353 1e-96
At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains ... 86 5e-16
At4g36590.1 68417.m05194 MADS-box protein (AGL40) contains ... 74 2e-12
At5g32600.1 68418.m03877 hypothetical protein 38 0.10
>At1g01530.1 68414.m00069 MADS-box protein (AGL28) similar to MADS-box
transcription factor GI:6580943 from [Picea abies];
contains Pfam profile PF00319: SRF-type transcription
factor (DNA-binding and dimerisation domain)
Length = 744
Score = 1475 bits (744), Expect = 0.0
Identities = 744/744 (100%)
Strand = Plus / Plus
Query: 1 atggcgagaaagaatcttggtcgtagaaaaatagagttggtaaaaatgaccaacgaatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggcgagaaagaatcttggtcgtagaaaaatagagttggtaaaaatgaccaacgaatca 60
Query: 61 aaccttcaagttacgttttcaaaaagaagatctggtcttttcaaaaaaggcagtgaactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaccttcaagttacgttttcaaaaagaagatctggtcttttcaaaaaaggcagtgaactt 120
Query: 121 tgcaccttatgtgacgcggaaattgcgataatcgtgttttcaccctcgggaaaagcatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcaccttatgtgacgcggaaattgcgataatcgtgttttcaccctcgggaaaagcatac 180
Query: 181 tcttttggtcatccaaatgttaacaagttacttgaccactctttagggcgtgttataaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcttttggtcatccaaatgttaacaagttacttgaccactctttagggcgtgttataaga 240
Query: 241 cacaacaacacaaactttgctgaaagccgcacaaagctccgtattcaaatgctcaatgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cacaacaacacaaactttgctgaaagccgcacaaagctccgtattcaaatgctcaatgag 300
Query: 301 tctttaactgaggtgatggctgaaaaagaaaaagaacaagagaccaagcagtcaatagtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tctttaactgaggtgatggctgaaaaagaaaaagaacaagagaccaagcagtcaatagtc 360
Query: 361 caaaatgaaagagagaacaaggacgctgagaagtggtggaggaactctccaacagaactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaaatgaaagagagaacaaggacgctgagaagtggtggaggaactctccaacagaactc 420
Query: 421 aacttagctcaatcaacttccatgaaatgtgatcttgaagctttgaagaaggaagttgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aacttagctcaatcaacttccatgaaatgtgatcttgaagctttgaagaaggaagttgat 480
Query: 481 gaaaaagtcgctcaacttcatcatagaaacctaaacttctatgttggaagttctagcaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaaaaagtcgctcaacttcatcatagaaacctaaacttctatgttggaagttctagcaat 540
Query: 541 gttgctgctccagcagctgttagtggtggtaatatctccacaaaccatggtttctttgat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gttgctgctccagcagctgttagtggtggtaatatctccacaaaccatggtttctttgat 600
Query: 601 caaaacggaaactctacttctgctccaacactgccgtttggatttaatgttatgaatcgc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caaaacggaaactctacttctgctccaacactgccgtttggatttaatgttatgaatcgc 660
Query: 661 acaccagctgggtacaacagttaccaactccaaaaccaggaggttaaacaagtccatcct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acaccagctgggtacaacagttaccaactccaaaaccaggaggttaaacaagtccatcct 720
Query: 721 cagtattgggctcgttactattag 744
||||||||||||||||||||||||
Sbjct: 721 cagtattgggctcgttactattag 744
>At1g65360.1 68414.m07414 MADS-box protein (AGL23) similar to MADS-box protein
GI:2505875 from [Arabidopsis thaliana]; contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 681
Score = 353 bits (178), Expect = 1e-96
Identities = 541/659 (82%), Gaps = 6/659 (0%)
Strand = Plus / Plus
Query: 15 tcttggtcgtagaaaaatagagttggtaaaaatgaccaacgaatcaaaccttcaagttac 74
||||||||||||||| ||||| | || |||||||| || ||||||||||||||||| ||
Sbjct: 15 tcttggtcgtagaaaggtagagatagtgaaaatgactaaggaatcaaaccttcaagtcac 74
Query: 75 gttttcaaaaagaagatctggtcttttcaaaaaaggcagtgaactttgcaccttatgtga 134
||||| || |||| | |||||||||| || || | |||||| ||||||| ||||||||
Sbjct: 75 attttccaagagaaaagctggtctttttaagaaggctagtgaattttgcacattatgtga 134
Query: 135 cgcggaaattgcgataatcgtgttttcaccctcgggaaaagcatactcttttggtcatcc 194
|| |||||||||| |||||||||||||| | ||||||| || ||||||||||||||
Sbjct: 135 tgcaaaaattgcgatgatcgtgttttcaccagctggaaaagtattttcttttggtcatcc 194
Query: 195 aaatgttaacaagttacttgaccactctttagggcgtgttataagacacaacaacacaaa 254
||||||| | | |||||||||| | |||| ||||| || ||||||||||||||||
Sbjct: 195 aaatgttgatgttctgcttgaccactttcgagggtgtgttgtaggacacaacaacacaaa 254
Query: 255 ctttgctgaaagccgcacaaagctccgtattcaaatgctcaatgagtctttaactgaggt 314
| ||| ||||||| ||||||||| | | ||||||||||||| | || | ||||||||
Sbjct: 255 ccttgatgaaagctacacaaagcttcatgttcaaatgctcaacaaatcctacactgaggt 314
Query: 315 gatggctgaaaaagaaaaagaacaagagaccaagcagtcaatagtccaaaatgaaagaga 374
|| ||| ||| ||||||||||||| ||| |||||||| | ||||||||||||||
Sbjct: 315 gaaggcggaagtagaaaaagaacaaaagaataagcagtcgcgggctcaaaatgaaagaga 374
Query: 375 gaacaaggacgctgagaagtggtggaggaactctccaacagaactcaacttagctcaatc 434
||| | |||||||| |||||||||| || |||||| ||||||||||||| ||||||
Sbjct: 375 aaacgaaaacgctgaggagtggtggagtaagtctccattagaactcaacttaagtcaatc 434
Query: 435 aacttccatgaaatgtgatcttgaagctttgaagaaggaagttgatgaaaaagtcgctca 494
||| | |||| | ||| |||| ||| |||||||||| |||||||||||||| |||
Sbjct: 435 aacctgtatgatacgtgttcttaaagatttgaagaagatagttgatgaaaaagcaattca 494
Query: 495 actt---catcatagaaacctaaacttctatgttggaagttctagcaatgttgctgctcc 551
| | ||||| | ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 495 attaatccatcaaacaaacccaaacttctatgttggaagttctagcaatgctgctgctcc 554
Query: 552 agcagctgttagtggtggtaatatctccacaaaccatggtttctttgatcaaaacggaa- 610
|||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 555 agcaactgttagtggtggtaatatctccacaaaccaggggttctttgatcaaaacggaat 614
Query: 611 -ac-tctacttctgctccaacactgccgtttggatttaatgttatgaatcgcacaccag 667
|| ||| | || ||| |||||| | |||||||||| || ||||||||||||||||||
Sbjct: 615 gacgactaatcctactcaaacacttctgtttggatttgatattatgaatcgcacaccag 673
>At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 900
Score = 85.7 bits (43), Expect = 5e-16
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 27 aaaaatagagttggtaaaaatgaccaacgaatcaaaccttcaagttacgttttcaaaaag 86
|||||||||| |||| ||||||| || ||| |||||||||||||| |||||||||||
Sbjct: 27 aaaaatagagatggtcaaaatgaaaaatgaaagtaaccttcaagttactttttcaaaaag 86
Query: 87 aagatctggtcttttcaaaaaaggcagtgaactttgcac 125
||||||||| ||||||||||| | ||||| ||||||||
Sbjct: 87 aagatctggacttttcaaaaaggctagtgagctttgcac 125
Score = 42.1 bits (21), Expect = 0.007
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 513 aaacttctatgttggaagttctagcaatgttgctgct 549
|||||||||||| ||||||||||| ||| |||||||
Sbjct: 528 aaacttctatgtgggaagttctagtaataatgctgct 564
Score = 42.1 bits (21), Expect = 0.007
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 181 tcttttggtcatccaaatgtt 201
|||||||||||||||||||||
Sbjct: 181 tcttttggtcatccaaatgtt 201
>At4g36590.1 68417.m05194 MADS-box protein (AGL40) contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 994
Score = 73.8 bits (37), Expect = 2e-12
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 61 aaccttcaagttacgttttcaaaaagaagatctggtcttttcaaaaaaggcagtgaactt 120
|||||||| ||||| || ||||||||||||| |||||||||||||||| |||||||||
Sbjct: 99 aaccttcaggttactttctcaaaaagaagattcggtcttttcaaaaaagctagtgaactt 158
Query: 121 tgcac 125
|||||
Sbjct: 159 tgcac 163
>At5g32600.1 68418.m03877 hypothetical protein
Length = 1167
Score = 38.2 bits (19), Expect = 0.10
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 323 aaaaagaaaaagaacaaga 341
|||||||||||||||||||
Sbjct: 751 aaaaagaaaaagaacaaga 769
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,204
Number of Sequences: 29161
Number of extensions: 30204
Number of successful extensions: 808
Number of sequences better than 10.0: 74
length of query: 744
length of database: 44,058,232
effective HSP length: 17
effective length of query: 727
effective length of database: 43,562,495
effective search space: 31669933865
effective search space used: 31669933865
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)