BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01520.F
(864 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01520.1 68414.m00068 myb family transcription factor si... 1713 0.0
At4g01280.1 68417.m00169 myb family transcription factor co... 196 2e-49
At5g52660.2 68418.m06538 myb family transcription factor co... 109 4e-23
At5g52660.1 68418.m06537 myb family transcription factor co... 109 4e-23
At3g09600.1 68416.m01140 myb family transcription factor co... 74 2e-12
>At1g01520.1 68414.m00068 myb family transcription factor similar to myb-related
protein GI:2505876 from [Arabidopsis thaliana]
Length = 864
Score = 1713 bits (864), Expect = 0.0
Identities = 864/864 (100%)
Strand = Plus / Plus
Query: 1 atggtgactgtaaaccctagccaagctcattgtttgcctatgaaaatgagtctaccgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggtgactgtaaaccctagccaagctcattgtttgcctatgaaaatgagtctaccgggt 60
Query: 61 ttcaatactcttccccacacggcaacaacgataccggtttccatacggagcaataggacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcaatactcttccccacacggcaacaacgataccggtttccatacggagcaataggacg 120
Query: 121 atgtcgttttttgaggatccaacaaagaaggttagaaagccttacactatcaccaaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgtcgttttttgaggatccaacaaagaaggttagaaagccttacactatcaccaaatct 180
Query: 181 agagagaactggacggagcaagaacacgacaagttccttgaagcccttcatctatttgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agagagaactggacggagcaagaacacgacaagttccttgaagcccttcatctatttgac 240
Query: 241 cgggattggaagaaaataaaggcctttgttggatcaaaaacagtgatacagatacgaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cgggattggaagaaaataaaggcctttgttggatcaaaaacagtgatacagatacgaagc 300
Query: 301 cacgcacagaagtactttctcaaagttcagaagaatgggactaaagaacatctcccacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cacgcacagaagtactttctcaaagttcagaagaatgggactaaagaacatctcccacct 360
Query: 361 cctcgaccaaagaggaaagccaatcacccatatccacaaaaagctcctaaatttactctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctcgaccaaagaggaaagccaatcacccatatccacaaaaagctcctaaatttactctt 420
Query: 421 tcttcttcaaacgcattatttcaacatgactacttatacaacactaattcacatccggtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcttcttcaaacgcattatttcaacatgactacttatacaacactaattcacatccggtg 480
Query: 481 attagcaccacccgtaagcatggattagtgcattgcgatgttagtataccaagttctgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attagcaccacccgtaagcatggattagtgcattgcgatgttagtataccaagttctgtt 540
Query: 541 atcaaagaggaatttggtgtctcagagaactgttgcagcactagtagtagtagagataag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atcaaagaggaatttggtgtctcagagaactgttgcagcactagtagtagtagagataag 600
Query: 601 cagaggactagaatcgttacagagacaaatgaccaagaaagttgtggaaagccacataga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cagaggactagaatcgttacagagacaaatgaccaagaaagttgtggaaagccacataga 660
Query: 661 gtggcgccaaatttcgctgaagtttacaattttataggaagtgtgtttgatcctaaaaca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gtggcgccaaatttcgctgaagtttacaattttataggaagtgtgtttgatcctaaaaca 720
Query: 721 acaggtcatgtcaagagattaaaggaaatggatccaataaatcttgagacggttctctta 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acaggtcatgtcaagagattaaaggaaatggatccaataaatcttgagacggttctctta 780
Query: 781 ctgatgaaaaatttatctgtaaacctgacgagtcccgagtttgatgaacaacggaagttg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ctgatgaaaaatttatctgtaaacctgacgagtcccgagtttgatgaacaacggaagttg 840
Query: 841 atatcatcttacaacgccagttag 864
||||||||||||||||||||||||
Sbjct: 841 atatcatcttacaacgccagttag 864
>At4g01280.1 68417.m00169 myb family transcription factor contains PFAM profile:
PF00249 myb-like DNA binding domain
Length = 1439
Score = 196 bits (99), Expect = 2e-49
Identities = 219/259 (84%)
Strand = Plus / Plus
Query: 122 tgtcgttttttgaggatccaacaaagaaggttagaaagccttacactatcaccaaatcta 181
||||||||| ||||||||| || | |||| || | ||||| ||||| |||| || || |
Sbjct: 193 tgtcgttttctgaggatccgacgacgaagattcggaagccgtacacaatcaagaagtcga 252
Query: 182 gagagaactggacggagcaagaacacgacaagttccttgaagcccttcatctatttgacc 241
||||||| ||||| || ||||| ||||| || || || ||||| ||||| |||| ||
Sbjct: 253 gagagaattggacagatcaagagcacgataaatttctagaagctcttcacttattcgata 312
Query: 242 gggattggaagaaaataaaggcctttgttggatcaaaaacagtgatacagatacgaagcc 301
||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||||
Sbjct: 313 gggattggaagaaaatagaagcctttgttggatcaaaaacagtagttcagatacgaagcc 372
Query: 302 acgcacagaagtactttctcaaagttcagaagaatgggactaaagaacatctcccacctc 361
|||| ||||| |||||||||||||||||||||| ||| |||| |||||||| |||||||
Sbjct: 373 acgctcagaaatactttctcaaagttcagaagagtggtgctaacgaacatcttccacctc 432
Query: 362 ctcgaccaaagaggaaagc 380
||||||| |||||||||||
Sbjct: 433 ctcgacctaagaggaaagc 451
Score = 151 bits (76), Expect = 1e-35
Identities = 190/228 (83%)
Strand = Plus / Plus
Query: 626 caaatgaccaagaaagttgtggaaagccacatagagtggcgccaaatttcgctgaagttt 685
||||| || |||||||||||| |||||||||||||||| ||| ||||| ||||||||||
Sbjct: 739 caaataacgaagaaagttgtgaaaagccacatagagtgatgccgaattttgctgaagttt 798
Query: 686 acaattttataggaagtgtgtttgatcctaaaacaacaggtcatgtcaagagattaaagg 745
||| || || |||||||| || ||||| || ||| |||| || || |||||||||||
Sbjct: 799 acagcttcattggaagtgtcttcgatcccaacacatcaggccacctccagagattaaagc 858
Query: 746 aaatggatccaataaatcttgagacggttctcttactgatgaaaaatttatctgtaaacc 805
| ||||||||||||||| | || |||||||| ||||||||| |||| | |||||||| |
Sbjct: 859 agatggatccaataaatatggaaacggttcttttactgatgcaaaacctgtctgtaaatc 918
Query: 806 tgacgagtcccgagtttgatgaacaacggaagttgatatcatcttaca 853
|||| ||||||||||||| || ||| ||| |||||||||||| ||||
Sbjct: 919 tgacaagtcccgagtttgcagagcaaaggaggttgatatcatcataca 966
>At5g52660.2 68418.m06538 myb family transcription factor contains PFAM profile:
PF00249 myb-like DNA-binding domain
Length = 1481
Score = 109 bits (55), Expect = 4e-23
Identities = 202/251 (80%)
Strand = Plus / Plus
Query: 145 aagaaggttagaaagccttacactatcaccaaatctagagagaactggacggagcaagaa 204
|||||| |||| |||||||| ||||| || || |||||||||| ||||||||||| ||
Sbjct: 299 aagaagattaggaagccttatactattactaagtctagagagagctggacggagcctgag 358
Query: 205 cacgacaagttccttgaagcccttcatctatttgaccgggattggaagaaaataaaggcc 264
|| || || ||||||||||| ||||| | ||||| | || |||||||| || | ||
Sbjct: 359 catgataaattccttgaagctcttcaattgtttgatagagactggaagaagattgaagct 418
Query: 265 tttgttggatcaaaaacagtgatacagatacgaagccacgcacagaagtactttctcaaa 324
||| |||| ||||| |||||||| ||||||||||| || || |||||||| ||||| ||
Sbjct: 419 tttattggttcaaagacagtgattcagatacgaagtcatgctcagaagtattttcttaag 478
Query: 325 gttcagaagaatgggactaaagaacatctcccacctcctcgaccaaagaggaaagccaat 384
|| || |||| |||||| ||||||||||| ||||||||||| || ||||||||| |
Sbjct: 479 gtacaaaagagtgggaccggtgaacatctccctcctcctcgacctaaaaggaaagccgct 538
Query: 385 cacccatatcc 395
|| ||||||||
Sbjct: 539 catccatatcc 549
>At5g52660.1 68418.m06537 myb family transcription factor contains PFAM profile:
PF00249 myb-like DNA-binding domain
Length = 1462
Score = 109 bits (55), Expect = 4e-23
Identities = 202/251 (80%)
Strand = Plus / Plus
Query: 145 aagaaggttagaaagccttacactatcaccaaatctagagagaactggacggagcaagaa 204
|||||| |||| |||||||| ||||| || || |||||||||| ||||||||||| ||
Sbjct: 283 aagaagattaggaagccttatactattactaagtctagagagagctggacggagcctgag 342
Query: 205 cacgacaagttccttgaagcccttcatctatttgaccgggattggaagaaaataaaggcc 264
|| || || ||||||||||| ||||| | ||||| | || |||||||| || | ||
Sbjct: 343 catgataaattccttgaagctcttcaattgtttgatagagactggaagaagattgaagct 402
Query: 265 tttgttggatcaaaaacagtgatacagatacgaagccacgcacagaagtactttctcaaa 324
||| |||| ||||| |||||||| ||||||||||| || || |||||||| ||||| ||
Sbjct: 403 tttattggttcaaagacagtgattcagatacgaagtcatgctcagaagtattttcttaag 462
Query: 325 gttcagaagaatgggactaaagaacatctcccacctcctcgaccaaagaggaaagccaat 384
|| || |||| |||||| ||||||||||| ||||||||||| || ||||||||| |
Sbjct: 463 gtacaaaagagtgggaccggtgaacatctccctcctcctcgacctaaaaggaaagccgct 522
Query: 385 cacccatatcc 395
|| ||||||||
Sbjct: 523 catccatatcc 533
>At3g09600.1 68416.m01140 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 1393
Score = 73.8 bits (37), Expect = 2e-12
Identities = 139/173 (80%)
Strand = Plus / Plus
Query: 169 atcaccaaatctagagagaactggacggagcaagaacacgacaagttccttgaagccctt 228
|||||||| || ||||||| |||||| ||| |||| ||||| ||||| |||||||| |||
Sbjct: 159 atcaccaagtcaagagagagctggacagaggaagagcacgataagtttcttgaagcactt 218
Query: 229 catctatttgaccgggattggaagaaaataaaggcctttgttggatcaaaaacagtgata 288
|| || ||||| || || |||||||| || | | |||||||| ||||| || |||||
Sbjct: 219 caactgtttgatcgtgactggaagaagattgaagattttgttggttcaaagactgtgatt 278
Query: 289 cagatacgaagccacgcacagaagtactttctcaaagttcagaagaatgggac 341
|||||| | || || || || || ||||||||||| |||||||| || |||||
Sbjct: 279 cagataaggagtcatgctcaaaaatactttctcaaggttcagaaaaacgggac 331
Score = 42.1 bits (21), Expect = 0.008
Identities = 93/117 (79%)
Strand = Plus / Plus
Query: 671 atttcgctgaagtttacaattttataggaagtgtgtttgatcctaaaacaacaggtcatg 730
|||| ||||||||||| ||||| || || ||||| ||||||||| |||| | ||| ||||
Sbjct: 688 attttgctgaagtttataatttcattgggagtgtctttgatcctgaaacgagaggccatg 747
Query: 731 tcaagagattaaaggaaatggatccaataaatcttgagacggttctcttactgatga 787
| | | | |||||||||||||| |||||| | || || ||||| ||| ||||||
Sbjct: 748 tggaaaagctcaaggaaatggatcctataaatttcgaaactgttctgttattgatga 804
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,784
Number of Sequences: 29161
Number of extensions: 28784
Number of successful extensions: 705
Number of sequences better than 10.0: 69
length of query: 864
length of database: 44,058,232
effective HSP length: 17
effective length of query: 847
effective length of database: 43,562,495
effective search space: 36897433265
effective search space used: 36897433265
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)