BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01030.F
(1077 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01030.1 68414.m00003 DNA-binding protein, putative simi... 2135 0.0
At4g01500.1 68417.m00193 DNA-binding protein, putative simi... 147 2e-34
At3g61970.1 68416.m06960 DNA-binding protein, putative simi... 117 2e-25
At2g46870.1 68415.m05849 DNA-binding protein, putative simi... 76 7e-13
At5g37430.1 68418.m04503 hypothetical protein contains Pfam... 66 7e-10
>At1g01030.1 68414.m00003 DNA-binding protein, putative similar to DNA-binding
proteins from [Arabidopsis thaliana] RAV1 GI:3868857,
RAV2 GI:3868859; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 1802
Score = 2135 bits (1077), Expect = 0.0
Identities = 1077/1077 (100%)
Strand = Plus / Plus
Query: 1 atggatctatccctggctccgacaacaacaacaagttccgaccaagaacaagacagagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atggatctatccctggctccgacaacaacaacaagttccgaccaagaacaagacagagac 570
Query: 61 caagaattaacctccaacatcggagcaagcagcagctccggtcccagcggaaacaacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 caagaattaacctccaacatcggagcaagcagcagctccggtcccagcggaaacaacaac 630
Query: 121 aaccttccgatgatgatgattccacctccggagaaagaacacatgttcgacaaagtggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaccttccgatgatgatgattccacctccggagaaagaacacatgttcgacaaagtggta 690
Query: 181 acaccaagcgacgtcggaaaactcaacagactcgtgatccctaaacaacacgctgagagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 acaccaagcgacgtcggaaaactcaacagactcgtgatccctaaacaacacgctgagagg 750
Query: 241 tatttccctctagactcctcaaacaaccaaaacggcacgcttttgaacttccaagacaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tatttccctctagactcctcaaacaaccaaaacggcacgcttttgaacttccaagacaga 810
Query: 301 aacggcaagatgtggagattccgttactcgtattggaactctagccagagctacgttatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aacggcaagatgtggagattccgttactcgtattggaactctagccagagctacgttatg 870
Query: 361 accaaaggatggagccgtttcgtcaaagagaaaaagctcgatgcaggagacattgtctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 accaaaggatggagccgtttcgtcaaagagaaaaagctcgatgcaggagacattgtctct 930
Query: 421 ttccaacgaggcatcggagatgagtcagaaagatccaaactttacatagattggaggcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 ttccaacgaggcatcggagatgagtcagaaagatccaaactttacatagattggaggcat 990
Query: 481 agacccgacatgagcctcgttcaagcacatcagtttggtaattttggtttcaatttcaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 agacccgacatgagcctcgttcaagcacatcagtttggtaattttggtttcaatttcaat 1050
Query: 541 ttcccgaccacttctcaatattccaacagatttcatccattgccagaatataactccgtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 ttcccgaccacttctcaatattccaacagatttcatccattgccagaatataactccgtc 1110
Query: 601 ccgattcaccggggcttaaacatcggaaatcaccaacgttcctattataacacccagcgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 ccgattcaccggggcttaaacatcggaaatcaccaacgttcctattataacacccagcgt 1170
Query: 661 caagagttcgtagggtatggttatgggaatttagctggaaggtgttactacacgggatca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1171 caagagttcgtagggtatggttatgggaatttagctggaaggtgttactacacgggatca 1230
Query: 721 ccgttggatcataggaacattgttggatcagagccgttggttatagactcagtccctgtg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1231 ccgttggatcataggaacattgttggatcagagccgttggttatagactcagtccctgtg 1290
Query: 781 gttcccgggagattaactccggtgatgttaccgccgcttcctccgcctccttctacggcg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1291 gttcccgggagattaactccggtgatgttaccgccgcttcctccgcctccttctacggcg 1350
Query: 841 ggaaagagactaaggctctttggggtgaatatggaatgtggcaatgactataatcaacaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1351 ggaaagagactaaggctctttggggtgaatatggaatgtggcaatgactataatcaacaa 1410
Query: 901 gaagagtcatggttggtgccacgtggcgaaattggtgcatcttcttcttcttcttcagct 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1411 gaagagtcatggttggtgccacgtggcgaaattggtgcatcttcttcttcttcttcagct 1470
Query: 961 ctacgactaaatttatcgactgatcatgatgatgataatgatgatggtgatgatggcgat 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 ctacgactaaatttatcgactgatcatgatgatgataatgatgatggtgatgatggcgat 1530
Query: 1021 gatgatcaatttgctaagaaagggaagtcttcactttctctcaatttcaatccatga 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 gatgatcaatttgctaagaaagggaagtcttcactttctctcaatttcaatccatga 1587
>At4g01500.1 68417.m00193 DNA-binding protein, putative similar to DNA-binding
proteins from [Arabidopsis thaliana] RAV1 GI:3868857,
RAV2 GI:3868859; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 1135
Score = 147 bits (74), Expect = 2e-34
Identities = 116/130 (89%)
Strand = Plus / Plus
Query: 263 acaaccaaaacggcacgcttttgaacttccaagacagaaacggcaagatgtggagattcc 322
|||| ||||||||||| | ||| | |||||||||| |||||||||||||||||| || |
Sbjct: 182 acaatcaaaacggcacagtgttggatttccaagacaaaaacggcaagatgtggaggtttc 241
Query: 323 gttactcgtattggaactctagccagagctacgttatgaccaaaggatggagccgtttcg 382
||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct: 242 gttactcgtattggaacagtagccaaagctacgtgatgaccaaaggatggagccgtttcg 301
Query: 383 tcaaagagaa 392
|||| |||||
Sbjct: 302 tcaaggagaa 311
Score = 61.9 bits (31), Expect = 1e-08
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 160 cacatgttcgacaaagtggtaacaccaagcgacgtcggaaaactcaacagactcgtgat 218
|||||||||||||||||| | |||||||| |||||||| ||||| ||| | ||||||||
Sbjct: 85 cacatgttcgacaaagtgttgacaccaagtgacgtcggtaaactaaaccggctcgtgat 143
Score = 40.1 bits (20), Expect = 0.038
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 704 gttactacacgggatcaccgttggatca 731
|||||||| | |||||||||||||||||
Sbjct: 623 gttactacgcaggatcaccgttggatca 650
Score = 32.2 bits (16), Expect = 9.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 671 tagggtatggttatgg 686
||||||||||||||||
Sbjct: 581 tagggtatggttatgg 596
>At3g61970.1 68416.m06960 DNA-binding protein, putative similar to DNA-binding
proteins from [Arabidopsis thaliana] RAV1 GI:3868857 and
RAV2 GI:3868859, AP2 domain containing protein RAP2.8
[Arabidopsis thaliana] GI:2281641; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 1389
Score = 117 bits (59), Expect = 2e-25
Identities = 89/99 (89%)
Strand = Plus / Plus
Query: 150 ggagaaagaacacatgttcgacaaagtggtaacaccaagcgacgtcggaaaactcaacag 209
||||| ||||||||||||||||||||| ||||||||||||||||| || ||||| ||| |
Sbjct: 417 ggagagagaacacatgttcgacaaagtagtaacaccaagcgacgttggcaaactaaaccg 476
Query: 210 actcgtgatccctaaacaacacgctgagaggtatttccc 248
||||||||||||||| |||||||| ||||| || |||||
Sbjct: 477 actcgtgatccctaagcaacacgcagagagatacttccc 515
Score = 75.8 bits (38), Expect = 7e-13
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 313 tggagattccgttactcgtattggaactctagccagagctacgttatgaccaaaggatgg 372
||||| ||||||||||| || |||||| ||| || ||||| || ||||| ||||| |||
Sbjct: 589 tggaggttccgttactcttactggaacagtagtcaaagctatgtcatgactaaaggttgg 648
Query: 373 agccgtttcgtcaaagagaaaaagctcgatgcaggagacattgtctcttt 422
|||||||| |||||||| || ||||| ||||| |||||||| || |||||
Sbjct: 649 agccgttttgtcaaagacaagaagcttgatgctggagacatcgtttcttt 698
>At2g46870.1 68415.m05849 DNA-binding protein, putative similar to DNA-binding
proteins from [Arabidopsis thaliana] RAV1 GI:3868857,
RAV2 GI:3868859; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 1487
Score = 75.8 bits (38), Expect = 7e-13
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 313 tggagattccgttactcgtattggaactctagccagagctacgttatgaccaaaggatgg 372
||||| ||||||||||| || |||||| ||| || ||||| || ||||| ||||| |||
Sbjct: 645 tggaggttccgttactcttactggaacagtagtcaaagctatgtcatgactaaaggttgg 704
Query: 373 agccgtttcgtcaaagagaaaaagctcgatgcaggagacattgtctctttccaa 426
||| | ||||| ||||| |||||||| || || ||||| |||||||||||||||
Sbjct: 705 agcagattcgttaaagacaaaaagcttgacgccggagatattgtctctttccaa 758
Score = 71.9 bits (36), Expect = 1e-11
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 160 cacatgttcgacaaagtggtaacaccaagcgacgtcggaaaactcaacagactcgtgatc 219
||||||||||||||||| || || ||||| || ||||||||||| ||| |||| ||||||
Sbjct: 492 cacatgttcgacaaagttgtgactccaagtgatgtcggaaaactaaaccgacttgtgatc 551
Query: 220 cctaaacaacacgctgagag 239
|| || |||||||| |||||
Sbjct: 552 ccaaagcaacacgcagagag 571
>At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04510 : Family of
unknown function (DUF577)); common family comprised of
At5g37410, At5g37400, At5g37920, At5g37460, At5g37650,
At5g37470, At5g37420, At5g37430
Length = 1824
Score = 65.9 bits (33), Expect = 7e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 986 atgatgatgataatgatgatggtgatgatggcgatgatgat 1026
||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 1760 atgatgatgatgatgatgatggtgatgatggtgatgatgat 1800
Score = 63.9 bits (32), Expect = 3e-09
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 987 tgatgatgataatgatgatggtgatgatggcgatgatgat 1026
|||||||||| ||||||||||||||||||| |||||||||
Sbjct: 1728 tgatgatgatgatgatgatggtgatgatggtgatgatgat 1767
Score = 52.0 bits (26), Expect = 1e-05
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 981 tgatcatgatgatgataatgatgatggtgatgatggcgatgatgat 1026
|||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct: 1731 tgatgatgatgatgatggtgatgatggtgatgatgatgatgatgat 1776
Score = 52.0 bits (26), Expect = 1e-05
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 981 tgatcatgatgatgataatgatgatggtgatgatggcgatgatgat 1026
|||| ||||||||| | |||||||||||||||||| |||||||||
Sbjct: 1701 tgatgatgatgatggtgatgatgatggtgatgatgatgatgatgat 1746
Score = 52.0 bits (26), Expect = 1e-05
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 981 tgatcatgatgatgataatgatgatggtgatgatggcgatgatgat 1026
|||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct: 1764 tgatgatgatgatgatggtgatgatggtgatgatgatgatgatgat 1809
Score = 50.1 bits (25), Expect = 4e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 986 atgatgatgataatgatgatggtgatgatggcgatgatgat 1026
||||||||||| |||||| || ||||||||| |||||||||
Sbjct: 1697 atgatgatgatgatgatggtgatgatgatggtgatgatgat 1737
Score = 50.1 bits (25), Expect = 4e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 986 atgatgatgataatgatgatggtgatgatggcgatgatgat 1026
|||||| |||| |||||||||||||||||| |||||||||
Sbjct: 1673 atgatggtgatgatgatgatggtgatgatgatgatgatgat 1713
Score = 50.1 bits (25), Expect = 4e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 987 tgatgatgataatgatgatggtgatgatg 1015
|||||||||| ||||||||||||||||||
Sbjct: 1695 tgatgatgatgatgatgatggtgatgatg 1723
Score = 50.1 bits (25), Expect = 4e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 998 atgatgatggtgatgatggcgatgatgat 1026
||||||||||||||||||| |||||||||
Sbjct: 1661 atgatgatggtgatgatggtgatgatgat 1689
Score = 46.1 bits (23), Expect = 6e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 985 catgatgatgataatgatgatggtgatgatg 1015
|||||||||||| |||||||||||||||||
Sbjct: 1657 catgatgatgatggtgatgatggtgatgatg 1687
Score = 38.2 bits (19), Expect = 0.15
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 981 tgatcatgatgatgataatgatgatgg 1007
|||| ||||||||||| ||||||||||
Sbjct: 1791 tgatgatgatgatgatgatgatgatgg 1817
Score = 36.2 bits (18), Expect = 0.59
Identities = 39/46 (84%)
Strand = Plus / Plus
Query: 981 tgatcatgatgatgataatgatgatggtgatgatggcgatgatgat 1026
|||| ||||||||||| ||| ||||| ||||| || |||||||||
Sbjct: 1695 tgatgatgatgatgatgatggtgatgatgatggtgatgatgatgat 1740
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,329
Number of Sequences: 29161
Number of extensions: 75329
Number of successful extensions: 9641
Number of sequences better than 10.0: 1808
length of query: 1077
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1059
effective length of database: 43,533,334
effective search space: 46101800706
effective search space used: 46101800706
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)