BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01020.F
(387 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01020.1 68414.m00002 transmembrane ARV1-like family pro... 767 0.0
At4g01510.1 68417.m00194 transmembrane ARV1-like family pro... 155 3e-37
At4g21160.4 68417.m03061 zinc finger and C2 domain protein ... 38 0.053
At4g21160.3 68417.m03060 zinc finger and C2 domain protein ... 38 0.053
At5g57930.2 68418.m07247 expressed protein 34 0.82
>At1g01020.1 68414.m00002 transmembrane ARV1-like family protein contains
similarity to ARV1 [Homo sapiens]
gi|12044055|gb|AAG47671
Length = 387
Score = 767 bits (387), Expect = 0.0
Identities = 387/387 (100%)
Strand = Plus / Plus
Query: 1 atggcggcgagtgaacacagatgcgtgggatgtggttttagggtaaagtcattgttcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggcggcgagtgaacacagatgcgtgggatgtggttttagggtaaagtcattgttcatt 60
Query: 61 caatactctccgggtaacattcgtctcatgaaatgcggaaattgcaaggaagtagcagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caatactctccgggtaacattcgtctcatgaaatgcggaaattgcaaggaagtagcagat 120
Query: 121 gagtacatcgagtgtgaacgcatgattattttcatcgatttaatccttcacagaccaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagtacatcgagtgtgaacgcatgattattttcatcgatttaatccttcacagaccaaag 180
Query: 181 gtatatagacacgtcctctacaatgcaattaatccagcaactgtcaatattcagcatctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtatatagacacgtcctctacaatgcaattaatccagcaactgtcaatattcagcatctg 240
Query: 241 ttgtggaagttggtcttcgcctatcttcttctagactgttatagaagcttgctactgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgtggaagttggtcttcgcctatcttcttctagactgttatagaagcttgctactgaga 300
Query: 301 aaaagtgatgaagaatcgagcttttctgatagccctgttcttctatctataaaggttaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaagtgatgaagaatcgagcttttctgatagccctgttcttctatctataaaggttaga 360
Query: 361 tcgtttctttttaatggacttaattag 387
|||||||||||||||||||||||||||
Sbjct: 361 tcgtttctttttaatggacttaattag 387
>At4g01510.1 68417.m00194 transmembrane ARV1-like family protein contains
similarity to ARV1 [Homo sapiens]
gi|12044055|gb|AAG47671
Length = 905
Score = 155 bits (78), Expect = 3e-37
Identities = 207/250 (82%)
Strand = Plus / Plus
Query: 52 ttgttcattcaatactctccgggtaacattcgtctcatgaaatgcggaaattgcaaggaa 111
|||||||| ||||||||||| || || |||||||||||||||||| |||||| | |||
Sbjct: 124 ttgttcatacaatactctcctggaaattttcgtctcatgaaatgcgagaattgcgaagaa 183
Query: 112 gtagcagatgagtacatcgagtgtgaacgcatgattattttcatcgatttaatccttcac 171
|||||||| || || |||||||||| | |||||||||||||||| || || ||||||
Sbjct: 184 gtagcagacgaatatgtcgagtgtgagctattgattattttcatcgacttgattcttcac 243
Query: 172 agaccaaaggtatatagacacgtcctctacaatgcaattaatccagcaactgtcaatatt 231
| | |||||| ||||||||| | |||||||||| |||||| || | ||| ||| ||
Sbjct: 244 aaaacaaaggcttatagacacttactctacaatgttgttaatcaagaatctgcaaatgtt 303
Query: 232 cagcatctgttgtggaagttggtcttcgcctatcttcttctagactgttatagaagcttg 291
|||||||| || ||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct: 304 cagcatctattatggaaattggtcttggcttatcttcttctagatacttatagaagcttg 363
Query: 292 ctactgagaa 301
||||||||||
Sbjct: 364 ctactgagaa 373
>At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC) identical to
zinc finger and C2 domain protein GI:9957238 from
[Arabidopsis thaliana]
Length = 1544
Score = 38.2 bits (19), Expect = 0.053
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 162 aatccttcacagaccaaag 180
|||||||||||||||||||
Sbjct: 282 aatccttcacagaccaaag 264
>At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC) identical to
zinc finger and C2 domain protein GI:9957238 from
[Arabidopsis thaliana]
Length = 1544
Score = 38.2 bits (19), Expect = 0.053
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 162 aatccttcacagaccaaag 180
|||||||||||||||||||
Sbjct: 282 aatccttcacagaccaaag 264
>At5g57930.2 68418.m07247 expressed protein
Length = 1544
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 209 ttaatccagcaactgtc 225
|||||||||||||||||
Sbjct: 53 ttaatccagcaactgtc 69
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,078
Number of Sequences: 29161
Number of extensions: 11078
Number of successful extensions: 772
Number of sequences better than 10.0: 20
length of query: 387
length of database: 44,058,232
effective HSP length: 17
effective length of query: 370
effective length of database: 43,562,495
effective search space: 16118123150
effective search space used: 16118123150
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)