BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.sd.9927.C2
         (391 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAH63954.1|  Unknown (protein for MGC:73244) [Danio rerio]      31   6.1  
ref|NP_956284.1|  Unknown (protein for MGC:73244); wu:fb08f0...    31   6.1  
gb|AAH59584.1|  Unknown (protein for MGC:73244) [Danio rerio]      31   6.1  

>gb|AAH63954.1| Unknown (protein for MGC:73244) [Danio rerio]
          Length = 387

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -3

Query: 338 QFRQKKKLAEIHPKVFHYLI-YNQSTSISTNMITNY*GMNQECGLV 204
           QF Q+K +  + P V H+L+  N  T +++ +I N+ GM+ + G V
Sbjct: 67  QFPQEKPVVSVFPPVGHHLVDGNNGTMVTSPLIANF-GMHSDLGKV 111



>ref|NP_956284.1| Unknown (protein for MGC:73244); wu:fb08f03 [Danio
           rerio]|gi|37681807|gb|AAQ97781.1| hypothetical protein
           FLJ32642 [Danio rerio]
          Length = 387

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -3

Query: 338 QFRQKKKLAEIHPKVFHYLI-YNQSTSISTNMITNY*GMNQECGLV 204
           QF Q+K +  + P V H+L+  N  T +++ +I N+ GM+ + G V
Sbjct: 67  QFPQEKPVVSVFPPVGHHLVDGNNGTMVTSPLIANF-GMHSDLGKV 111



>gb|AAH59584.1| Unknown (protein for MGC:73244) [Danio rerio]
          Length = 387

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -3

Query: 338 QFRQKKKLAEIHPKVFHYLI-YNQSTSISTNMITNY*GMNQECGLV 204
           QF Q+K +  + P V H+L+  N  T +++ +I N+ GM+ + G V
Sbjct: 67  QFPQEKPVVSVFPPVGHHLVDGNNGTMVTSPLIANF-GMHSDLGKV 111



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 105
effective length of database: 430,706,628
effective search space used: 10336959072
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)