BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.9720.C2
(2836 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to S... 5620 0.0
At1g67560.1 68414.m07697 lipoxygenase family protein simila... 46 0.002
At5g12350.1 68418.m01453 zinc finger protein, putative / re... 40 0.10
At1g16270.1 68414.m01948 protein kinase family protein cont... 40 0.10
At3g63280.1 68416.m07111 protein kinase family protein cont... 38 0.40
>At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418
Length = 2837
Score = 5620 bits (2835), Expect = 0.0
Identities = 2835/2835 (100%)
Strand = Plus / Plus
Query: 2 aagccttatagaagagaaaaaaaatatgtattgtagagagtccttgtcgagtctccagac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 aagccttatagaagagaaaaaaaatatgtattgtagagagtccttgtcgagtctccagac 62
Query: 62 tttgaacgtagcaaagagtctcagctctttgttccctaaacaatcagctctcatcaaccc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tttgaacgtagcaaagagtctcagctctttgttccctaaacaatcagctctcatcaaccc 122
Query: 122 gatctccgctggacgtcgaaacaacctgcctcgtccaaacctcagaagacgatgtaaggt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gatctccgctggacgtcgaaacaacctgcctcgtccaaacctcagaagacgatgtaaggt 182
Query: 182 caccgcttcacgggctaatattgaacaagaaggtaacacagtgaaagaacccattcagaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 caccgcttcacgggctaatattgaacaagaaggtaacacagtgaaagaacccattcagaa 242
Query: 242 tattaaagtaaagggatacataacggcccaagaagagtttctggagggcataacttggtc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tattaaagtaaagggatacataacggcccaagaagagtttctggagggcataacttggtc 302
Query: 302 gagaggtctcgatgacattgctgatatccgcggcagatcattgctcgtcgagcttattag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gagaggtctcgatgacattgctgatatccgcggcagatcattgctcgtcgagcttattag 362
Query: 362 cgccaagactgaccagcggattacggtagaagactacgcacaacgtgtatgggccgaagc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cgccaagactgaccagcggattacggtagaagactacgcacaacgtgtatgggccgaagc 422
Query: 422 ccctgatgagaagtacgagtgcgagtttgagatgcctgaagactttggaccagtgggagc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccctgatgagaagtacgagtgcgagtttgagatgcctgaagactttggaccagtgggagc 482
Query: 482 catcaagattcagaaccaataccatcgacagttgttcctcaagggggtagagcttaaatt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 catcaagattcagaaccaataccatcgacagttgttcctcaagggggtagagcttaaatt 542
Query: 542 acccggcgggtcgataacgtttacatgtgagtcatgggtggcccccaagtccgttgaccc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 acccggcgggtcgataacgtttacatgtgagtcatgggtggcccccaagtccgttgaccc 602
Query: 602 aaccaagcggatattcttctccgacaagtcctacttgccttcccaaacaccagagcctct 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aaccaagcggatattcttctccgacaagtcctacttgccttcccaaacaccagagcctct 662
Query: 662 taaaaagtatcgaaaagaggagctcgagaccttacaaggcaagaaccgcgaggaagttgg 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 taaaaagtatcgaaaagaggagctcgagaccttacaaggcaagaaccgcgaggaagttgg 722
Query: 722 tgaatttaccaagtttgagcgcatttacgactatgatgtgtacaacgatgttggtgaccc 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tgaatttaccaagtttgagcgcatttacgactatgatgtgtacaacgatgttggtgaccc 782
Query: 782 tgacaatgatcctgaacttgctcgtccggtaattggaggcctcacacatccatatccaag 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tgacaatgatcctgaacttgctcgtccggtaattggaggcctcacacatccatatccaag 842
Query: 842 gcgttgcaagaccggtcgaaaaccttgtgagactgacccctcttcagagcaacgctacgg 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gcgttgcaagaccggtcgaaaaccttgtgagactgacccctcttcagagcaacgctacgg 902
Query: 902 gggagagttctatgtaccaagagacgaggagttctctacagccaagggcacttcattcac 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gggagagttctatgtaccaagagacgaggagttctctacagccaagggcacttcattcac 962
Query: 962 aggcaaggccgtactggcagctcttccctccatcttccctcagatcgagtctgttctatt 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 aggcaaggccgtactggcagctcttccctccatcttccctcagatcgagtctgttctatt 1022
Query: 1022 gagtccccaagaaccttttccacacttcaaggccatacaaaatctctttgaagaaggcat 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 gagtccccaagaaccttttccacacttcaaggccatacaaaatctctttgaagaaggcat 1082
Query: 1082 tcagcttcccaaggatgctggcctcttacctctgctccccagaatcatcaaagctcttgg 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 tcagcttcccaaggatgctggcctcttacctctgctccccagaatcatcaaagctcttgg 1142
Query: 1142 cgaagctcaagatgatattctccagtttgatgccccagttctcattaacagggatagatt 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 cgaagctcaagatgatattctccagtttgatgccccagttctcattaacagggatagatt 1202
Query: 1202 ttcatggttacgagacgacgagtttgctcgccagacacttgccggccttaatccttatag 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 ttcatggttacgagacgacgagtttgctcgccagacacttgccggccttaatccttatag 1262
Query: 1262 cattcagctagttgaagagtggccgttaataagcaaactagacccggccgtttatggtga 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 cattcagctagttgaagagtggccgttaataagcaaactagacccggccgtttatggtga 1322
Query: 1322 tcccacctcactcattacttgggaaattgtggaaagagaagttaaaggaaacatgacagt 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1323 tcccacctcactcattacttgggaaattgtggaaagagaagttaaaggaaacatgacagt 1382
Query: 1382 tgatgaggctctaaagaataagagattgttcgtgttggattatcatgatttgcttctacc 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 tgatgaggctctaaagaataagagattgttcgtgttggattatcatgatttgcttctacc 1442
Query: 1442 atatgtgaacaaagtgagagagttaaacaataccacattatatgcttctagaacactatt 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 atatgtgaacaaagtgagagagttaaacaataccacattatatgcttctagaacactatt 1502
Query: 1502 cttcctcagcgatgatagcacattgaggcctgttgccattgagttgacttgtccaccaaa 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 cttcctcagcgatgatagcacattgaggcctgttgccattgagttgacttgtccaccaaa 1562
Query: 1562 tatcaacaagccccaatggaaacaagtcttcacgccaggctatgatgctacgtcatgctg 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1563 tatcaacaagccccaatggaaacaagtcttcacgccaggctatgatgctacgtcatgctg 1622
Query: 1622 gctatggaatcttgctaagactcatgctatctctcatgacgccggttatcatcagcttat 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1623 gctatggaatcttgctaagactcatgctatctctcatgacgccggttatcatcagcttat 1682
Query: 1682 ttcccattggttgaggactcatgcctgtacggagccatacataatagcggcaaatagaca 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1683 ttcccattggttgaggactcatgcctgtacggagccatacataatagcggcaaatagaca 1742
Query: 1742 actaagtgccatgcatcccatttataggcttttgcatcctcatttccgctacaccatgga 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1743 actaagtgccatgcatcccatttataggcttttgcatcctcatttccgctacaccatgga 1802
Query: 1802 aatcaacgctcgtgcacgccaaagtcttgtcaacggaggtggaatcattgagacttgttt 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1803 aatcaacgctcgtgcacgccaaagtcttgtcaacggaggtggaatcattgagacttgttt 1862
Query: 1862 ctggcccgggaagtatgcattagagctaagttcagccgtctatggtaaactatggaggtt 1921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1863 ctggcccgggaagtatgcattagagctaagttcagccgtctatggtaaactatggaggtt 1922
Query: 1922 tgaccaggaaggcttacccgcggatctcatcaaaagggggttggctgaggaagataagac 1981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1923 tgaccaggaaggcttacccgcggatctcatcaaaagggggttggctgaggaagataagac 1982
Query: 1982 cgcagaacatggagtacgtctgacgataccagactatccatttgcaaatgatggtctaat 2041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1983 cgcagaacatggagtacgtctgacgataccagactatccatttgcaaatgatggtctaat 2042
Query: 2042 attgtgggatgcaattaaagaatgggtgacagactatgtgaaacattactatcctgatga 2101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2043 attgtgggatgcaattaaagaatgggtgacagactatgtgaaacattactatcctgatga 2102
Query: 2102 agaactgatcacatcggacgaggaactccaaggatggtggagtgaagtgcggaacatagg 2161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2103 agaactgatcacatcggacgaggaactccaaggatggtggagtgaagtgcggaacatagg 2162
Query: 2162 ccacggagacaagaaagacgaaccttggtggcctgtcctcaaaacacaagatgacttgat 2221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2163 ccacggagacaagaaagacgaaccttggtggcctgtcctcaaaacacaagatgacttgat 2222
Query: 2222 tggtgtggtaactacgattgcatgggtcacctcaggtcaccatgcagctgtaaactttgg 2281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2223 tggtgtggtaactacgattgcatgggtcacctcaggtcaccatgcagctgtaaactttgg 2282
Query: 2282 acagtacggatatggaggatactttcccaaccgaccaacgacaacaaggataagaatgcc 2341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2283 acagtacggatatggaggatactttcccaaccgaccaacgacaacaaggataagaatgcc 2342
Query: 2342 aacggaagatccgacagatgaagccttaaaagagttctatgagtcgccagaaaaagtgtt 2401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2343 aacggaagatccgacagatgaagccttaaaagagttctatgagtcgccagaaaaagtgtt 2402
Query: 2402 gcttaagacatacccatcgcagaaacaggcgaccctagtgatggtcacgttggatctttt 2461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2403 gcttaagacatacccatcgcagaaacaggcgaccctagtgatggtcacgttggatctttt 2462
Query: 2462 atcaacacattcacctgacgaagagtacattggagaacaacaagaagcatcttgggccaa 2521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2463 atcaacacattcacctgacgaagagtacattggagaacaacaagaagcatcttgggccaa 2522
Query: 2522 tgagcctgttatcaatgctgcatttgaaagattcaaaggcaagctccaatatctagaagg 2581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2523 tgagcctgttatcaatgctgcatttgaaagattcaaaggcaagctccaatatctagaagg 2582
Query: 2582 agtgatagatgagagaaacgtgaacattactctaaagaatagagctggagctggtgttgt 2641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2583 agtgatagatgagagaaacgtgaacattactctaaagaatagagctggagctggtgttgt 2642
Query: 2642 taagtatgagcttttgaagcctacctctgagcatggtgttaccggaatgggtgttcctta 2701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2643 taagtatgagcttttgaagcctacctctgagcatggtgttaccggaatgggtgttcctta 2702
Query: 2702 tagtatttctatttgatctatgcattttctttctcaaaaatgctttcattaattttctgt 2761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2703 tagtatttctatttgatctatgcattttctttctcaaaaatgctttcattaattttctgt 2762
Query: 2762 atctctgtcttcttgataaaatgaataaaacaaatgctcctttgtctcctatattaatct 2821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2763 atctctgtcttcttgataaaatgaataaaacaaatgctcctttgtctcctatattaatct 2822
Query: 2822 caaacagataaagct 2836
|||||||||||||||
Sbjct: 2823 caaacagataaagct 2837
>At1g67560.1 68414.m07697 lipoxygenase family protein similar to 13-lipoxygenase
GB:CAA65269 [Solanum tuberosum], gi:1654140 [Lycopersicon
esculentum]
Length = 2928
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2169 gacaagaaagacgaaccttggtggcct 2195
|||||||||||||| ||||||||||||
Sbjct: 2233 gacaagaaagacgagccttggtggcct 2259
Score = 38.2 bits (19), Expect = 0.40
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 2463 tcaacacattcacctgacgaagagtac 2489
||||| ||||| |||||||||||||||
Sbjct: 2521 tcaacgcattcccctgacgaagagtac 2547
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator of chromosome
condensation (RCC1) family protein similar to zinc finger
protein [Arabidopsis thaliana] gi|15811367|gb|AAL08940
Length = 3445
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2158 taggccacggagacaagaaa 2177
||||||||||||||||||||
Sbjct: 1295 taggccacggagacaagaaa 1314
>At1g16270.1 68414.m01948 protein kinase family protein contains PF|00069
Eukaryotic protein kinase domain. ESTs gb|H37741,
gb|T43005 and gb|AI100340 come from this gene
Length = 3667
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1186 ttaacagggatagattttca 1205
||||||||||||||||||||
Sbjct: 1000 ttaacagggatagattttca 1019
>At3g63280.1 68416.m07111 protein kinase family protein contains protein kinase
domain, Pfam:PF00069
Length = 1980
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 83 cagctctttgttccctaaa 101
|||||||||||||||||||
Sbjct: 1444 cagctctttgttccctaaa 1462
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,835
Number of Sequences: 29161
Number of extensions: 76835
Number of successful extensions: 1575
Number of sequences better than 10.0: 34
length of query: 2836
length of database: 44,058,232
effective HSP length: 19
effective length of query: 2817
effective length of database: 43,504,173
effective search space: 122551255341
effective search space used: 122551255341
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)