BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AI996795.x
(443 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704767.1| hypothetical protein [Plasmodium falciparu... 31 5.6
ref|ZP_00328364.1| COG0421: Spermidine synthase [Trichodesm... 30 7.4
>ref|NP_704767.1| hypothetical protein [Plasmodium falciparum
3D7]|gi|23505128|emb|CAD51910.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4202
Score = 30.8 bits (68), Expect = 5.6
Identities = 16/60 (26%), Positives = 27/60 (44%)
Frame = +3
Query: 42 MHGNTYANTCDS*YRKXNHRSTSSLFNSXRRVISTIYKHVYICNDKTSNTLLSXVQNHET 221
+H N Y N C S + N RS + + I KH + + +++ L QN++T
Sbjct: 153 VHPNIYYNNCLSDVHEKNDRSKFEVLKNDNEKDKLIIKHPFFLKNYKNDSSLQYEQNNDT 212
>ref|ZP_00328364.1| COG0421: Spermidine synthase [Trichodesmium erythraeum IMS101]
Length = 308
Score = 30.4 bits (67), Expect = 7.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 132 RVISTIYKHVYICNDKTSNTLLSXVQN 212
+ I T++ H+YICN NT++ +N
Sbjct: 218 KTIKTVFPHLYICNTSGGNTIIIGTRN 244
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 123
effective length of database: 396,591,264
effective search space used: 9518190336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
BLAST Search Results