BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.8451.C1
(1729 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation ... 3378 0.0
At1g54270.1 68414.m06187 eukaryotic translation initiation ... 1318 0.0
At1g72730.1 68414.m08410 eukaryotic translation initiation ... 638 0.0
At1g32240.1 68414.m03966 myb family transcription factor (K... 48 3e-04
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative si... 46 0.001
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor 4A-1 / eIF-4A-1
eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile
PF00270: DEAD/DEAH box helicase; contains Pfam profile
PF00271: Helicase conserved C-terminal domain
Length = 1761
Score = 3378 bits (1704), Expect = 0.0
Identities = 1704/1704 (100%)
Strand = Plus / Plus
Query: 1 ctctttcggatattccaccagtctctcgcaatcttcgctcttctctttgctctctctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctttcggatattccaccagtctctcgcaatcttcgctcttctctttgctctctctctc 60
Query: 61 tcaacgcggttcagatccgagtttgggagattcaagctccctgaaaaaagccctttactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcaacgcggttcagatccgagtttgggagattcaagctccctgaaaaaagccctttactc 120
Query: 121 tcgcttaccaactttgctccagcatggcaggatctgcaccagaaggcacacagtttgatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcgcttaccaactttgctccagcatggcaggatctgcaccagaaggcacacagtttgatg 180
Query: 181 cacgtcagtttgaccagaaactcaatgaagtacttgagggacaagatgagttcttcacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cacgtcagtttgaccagaaactcaatgaagtacttgagggacaagatgagttcttcacat 240
Query: 241 cctatgatgatgttcatgagagctttgatgccatgggtcttcaagagaaccttctcaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctatgatgatgttcatgagagctttgatgccatgggtcttcaagagaaccttctcaggg 300
Query: 301 gtatttatgcttatggttttgagaagccttctgctattcagcaaagaggaatcgtcccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtatttatgcttatggttttgagaagccttctgctattcagcaaagaggaatcgtcccct 360
Query: 361 tctgtaagggtcttgatgtgattcaacaggctcagtctggtactgggaaaacagcaactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctgtaagggtcttgatgtgattcaacaggctcagtctggtactgggaaaacagcaactt 420
Query: 421 tctgctctggtgtcttgcagcagctggacttctcccttatccagtgtcaggctttggttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tctgctctggtgtcttgcagcagctggacttctcccttatccagtgtcaggctttggttc 480
Query: 481 tagctccaactagagagcttgctcagcaaattgagaaggtcatgagggcccttggtgatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tagctccaactagagagcttgctcagcaaattgagaaggtcatgagggcccttggtgatt 540
Query: 541 accttggtgtcaaggttcacgcctgtgttggtggaaccagtgtccgtgaggatcagcgca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 accttggtgtcaaggttcacgcctgtgttggtggaaccagtgtccgtgaggatcagcgca 600
Query: 601 tcctccaagctggtgtccatgttgttgttggaactccagggcgtgtctttgacatgttga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcctccaagctggtgtccatgttgttgttggaactccagggcgtgtctttgacatgttga 660
Query: 661 agaggcagtctcttcgtgctgacaacatcaagatgtttgttctcgatgaagctgatgaaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agaggcagtctcttcgtgctgacaacatcaagatgtttgttctcgatgaagctgatgaaa 720
Query: 721 tgctctcccgtggtttcaaggaccagatctatgacatattccagcttcttccaccaaaga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgctctcccgtggtttcaaggaccagatctatgacatattccagcttcttccaccaaaga 780
Query: 781 tccaagttggtgtgttctccgcaacaatgccaccagaagctcttgagatcacaaggaagt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tccaagttggtgtgttctccgcaacaatgccaccagaagctcttgagatcacaaggaagt 840
Query: 841 tcatgagcaagccagtgagaatcttggtgaagcgtgatgagcttacccttgaaggtatca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tcatgagcaagccagtgagaatcttggtgaagcgtgatgagcttacccttgaaggtatca 900
Query: 901 agcagttctacgtcaacgttgagaaagaagagtggaagctcgagacactctgtgatctct 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 agcagttctacgtcaacgttgagaaagaagagtggaagctcgagacactctgtgatctct 960
Query: 961 acgagactcttgccatcactcagagtgtcatcttcgtgaacaccaggcgtaaggttgatt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 acgagactcttgccatcactcagagtgtcatcttcgtgaacaccaggcgtaaggttgatt 1020
Query: 1021 ggctcacagacaaaatgagaagccgtgaccacacagtctctgcaactcacggagacatgg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ggctcacagacaaaatgagaagccgtgaccacacagtctctgcaactcacggagacatgg 1080
Query: 1081 accagaacaccagggacatcatcatgagagagttcaggtctggttcctcccgtgttctca 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 accagaacaccagggacatcatcatgagagagttcaggtctggttcctcccgtgttctca 1140
Query: 1141 tcaccactgacctcttagctcgtggtattgatgtccaacaagtctccctggttatcaact 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tcaccactgacctcttagctcgtggtattgatgtccaacaagtctccctggttatcaact 1200
Query: 1201 tcgatctcccaactcagccagagaactaccttcaccgtatcggaagaagtggaaggttcg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 tcgatctcccaactcagccagagaactaccttcaccgtatcggaagaagtggaaggttcg 1260
Query: 1261 ggagaaagggtgttgcgatcaatttcgtgacccgtgatgatgagaggatgctgtttgata 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ggagaaagggtgttgcgatcaatttcgtgacccgtgatgatgagaggatgctgtttgata 1320
Query: 1321 ttcagaaattctacaatgtggttgtcgaagagctgccttcgaacgtggccgatctgctgt 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 ttcagaaattctacaatgtggttgtcgaagagctgccttcgaacgtggccgatctgctgt 1380
Query: 1381 gaagggagaaaagaagtcggttctgttgctgtgtttgctctgccgtactagtatcaccgg 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 gaagggagaaaagaagtcggttctgttgctgtgtttgctctgccgtactagtatcaccgg 1440
Query: 1441 agaagaaaggttttcttgttttgcaaggcactctttgatctgattttgacccgtcgtcta 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 agaagaaaggttttcttgttttgcaaggcactctttgatctgattttgacccgtcgtcta 1500
Query: 1501 tcagcgatttacatttcttaaattttcttagttgttgttctctcctctctctcccagcta 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 tcagcgatttacatttcttaaattttcttagttgttgttctctcctctctctcccagcta 1560
Query: 1561 cgaacatatctctctcttcttgaccatttttaagtttaagtcatatggagtatttatttc 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 cgaacatatctctctcttcttgaccatttttaagtttaagtcatatggagtatttatttc 1620
Query: 1621 ttcactattttaatattcggctttgttgtttgtctttgatttttgtatcaatcaaatctt 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 ttcactattttaatattcggctttgttgtttgtctttgatttttgtatcaatcaaatctt 1680
Query: 1681 ttcatcaaagtttggttttaagct 1704
||||||||||||||||||||||||
Sbjct: 1681 ttcatcaaagtttggttttaagct 1704
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor 4A-2 / eIF-4A-2
similar to eukaryotic translation initiation factor 4A
GI:19696 from [Nicotiana plumbaginifolia]
Length = 1759
Score = 1318 bits (665), Expect = 0.0
Identities = 1097/1241 (88%)
Strand = Plus / Plus
Query: 144 atggcaggatctgcaccagaaggcacacagtttgatgcacgtcagtttgaccagaaactc 203
||||||||||| ||||| ||||| ||||| |||||| | |||||||||||||||| ||
Sbjct: 273 atggcaggatccgcaccggaaggaacacaatttgatacgcgtcagtttgaccagaggctg 332
Query: 204 aatgaagtacttgagggacaagatgagttcttcacatcctatgatgatgttcatgagagc 263
|||||||| || || ||||| |||||||||||||| || |||||||| || |||||||||
Sbjct: 333 aatgaagttctcgatggacaggatgagttcttcacctcatatgatgaggtccatgagagc 392
Query: 264 tttgatgccatgggtcttcaagagaaccttctcaggggtatttatgcttatggttttgag 323
||||||||||||||| | |||||||| ||||| |||||||| |||||||| ||||| ||
Sbjct: 393 tttgatgccatgggtttgcaagagaatcttcttaggggtatctatgcttacggtttcgaa 452
Query: 324 aagccttctgctattcagcaaagaggaatcgtccccttctgtaagggtcttgatgtgatt 383
||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||
Sbjct: 453 aagccttctgctattcagcaaagaggaattgtacccttttgcaagggtcttgatgtgatc 512
Query: 384 caacaggctcagtctggtactgggaaaacagcaactttctgctctggtgtcttgcagcag 443
|| ||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 513 cagcaggcacagtctggtactggaaaaaccgccactttctgctctggtgtcttgcagcag 572
Query: 444 ctggacttctcccttatccagtgtcaggctttggttctagctccaactagagagcttgct 503
|| |||| ||||| ||||||| |||||| | ||| | ||||| || ||||||||||||
Sbjct: 573 cttgactatgcccttctccagtgccaggctctcgttttggctcccaccagagagcttgct 632
Query: 504 cagcaaattgagaaggtcatgagggcccttggtgattaccttggtgtcaaggttcacgcc 563
||||| ||||||||||||||| | ||||||||||| |||| |||||||||||||| |||
Sbjct: 633 cagcagattgagaaggtcatgcgtgcccttggtgactaccaaggtgtcaaggttcatgcc 692
Query: 564 tgtgttggtggaaccagtgtccgtgaggatcagcgcatcctccaagctggtgtccatgtt 623
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 693 tgtgttggtggaaccagtgtccgtgaggatcagcgcattctccaggctggtgttcatgtt 752
Query: 624 gttgttggaactccagggcgtgtctttgacatgttgaagaggcagtctcttcgtgctgac 683
|| ||||||||||| || ||||| ||||||||| | | || || ||||| || |||||
Sbjct: 753 gtcgttggaactcccggtcgtgtttttgacatgcttagaagacaatctctccgccctgac 812
Query: 684 aacatcaagatgtttgttctcgatgaagctgatgaaatgctctcccgtggtttcaaggac 743
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tgcatcaagatgtttgtccttgatgaagctgatgaaatgctctcccgtggtttcaaggat 872
Query: 744 cagatctatgacatattccagcttcttccaccaaagatccaagttggtgtgttctccgca 803
|||||||||||||||||||||||||| ||||||||||| || ||||| |||||||| ||
Sbjct: 873 cagatctatgacatattccagcttctcccaccaaagattcaggttggagtgttctctgcg 932
Query: 804 acaatgccaccagaagctcttgagatcacaaggaagttcatgagcaagccagtgagaatc 863
|||||||| || |||||| | ||||||||||| || ||||||||||| ||||||||||||
Sbjct: 933 acaatgcctccggaagctttggagatcacaagaaaattcatgagcaaaccagtgagaatc 992
Query: 864 ttggtgaagcgtgatgagcttacccttgaaggtatcaagcagttctacgtcaacgttgag 923
|||||||| ||||||||||| || ||||||||||||||||| |||||||| ||||| |||
Sbjct: 993 ttggtgaaacgtgatgagctcacacttgaaggtatcaagcaattctacgtgaacgtggag 1052
Query: 924 aaagaagagtggaagctcgagacactctgtgatctctacgagactcttgccatcactcag 983
|||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 1053 aaagaagactggaagcttgagactctctgcgatctctacgagactctagccatcactcag 1112
Query: 984 agtgtcatcttcgtgaacaccaggcgtaaggttgattggctcacagacaaaatgagaagc 1043
||||||||||| || ||||| | || ||||| || ||||||||||||||||||||||||
Sbjct: 1113 agtgtcatctttgtcaacactcgtcgcaaggtcgactggctcacagacaaaatgagaagc 1172
Query: 1044 cgtgaccacacagtctctgcaactcacggagacatggaccagaacaccagggacatcatc 1103
||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||
Sbjct: 1173 cgtgaccacacagtctcagcaactcatggagacatggaccaaaacaccagagacatcatc 1232
Query: 1104 atgagagagttcaggtctggttcctcccgtgttctcatcaccactgacctcttagctcgt 1163
|||||||||||||||||||| || || |||||||| ||||| || || ||||| ||||||
Sbjct: 1233 atgagagagttcaggtctggctcgtctcgtgttctaatcacaaccgatctcttggctcgt 1292
Query: 1164 ggtattgatgtccaacaagtctccctggttatcaacttcgatctcccaactcagccagag 1223
||||| ||||| || |||||||| || || || ||||| || ||||||||||||||||||
Sbjct: 1293 ggtatcgatgtgcagcaagtctctctagtcataaactttgacctcccaactcagccagag 1352
Query: 1224 aactaccttcaccgtatcggaagaagtggaaggttcgggagaaagggtgttgcgatcaat 1283
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1353 aattaccttcaccgtatcggaagaagtggaaggttcgggagaaagggtgtggcgattaac 1412
Query: 1284 ttcgtgacccgtgatgatgagaggatgctgtttgatattcagaaattctacaatgtggtt 1343
|| ||||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1413 tttgtgactcttgatgatcagagaatgctgtttgatattcagaaattctacaatgtggtt 1472
Query: 1344 gtcgaagagctgccttcgaacgtggccgatctgctgtgaag 1384
|| || ||||| || || |||||||| ||| ||||||||||
Sbjct: 1473 gttgaggagcttccctcaaacgtggctgatttgctgtgaag 1513
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor 4A, putative /
eIF-4A, putative similar to Eukaryotic initiation factor
4A-10 GB:P41382 [Nicotiana tabacum]; identical to
(putative) RNA helicase GB:CAA09211 [Arabidopsis
thaliana] (Nucleic Acids Res. 27 (2), 628-636 (1999))
Length = 1667
Score = 638 bits (322), Expect = 0.0
Identities = 718/850 (84%)
Strand = Plus / Plus
Query: 493 gagagcttgctcagcaaattgagaaggtcatgagggcccttggtgattaccttggtgtca 552
|||| ||||| ||||||||||| ||||| |||||||| |||||||| |||||||| ||||
Sbjct: 536 gagaacttgcccagcaaattgaaaaggttatgagggcacttggtgactaccttggcgtca 595
Query: 553 aggttcacgcctgtgttggtggaaccagtgtccgtgaggatcagcgcatcctccaagctg 612
||| ||| || |||||||||||||| ||||| ||||||||||| || | || || |||
Sbjct: 596 aggctcaggcttgtgttggtggaacaagtgttcgtgaggatcaacgtgttcttcagtctg 655
Query: 613 gtgtccatgttgttgttggaactccagggcgtgtctttgacatgttgaagaggcagtctc 672
|||| ||||||||||||||||| || || |||||||||||| |||| || || || |
Sbjct: 656 gtgttcatgttgttgttggaacccctggtcgtgtctttgacttgttacgcagacaatccc 715
Query: 673 ttcgtgctgacaacatcaagatgtttgttctcgatgaagctgatgaaatgctctcccgtg 732
| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 716 tccgtgctgatgcaatcaaaatgtttgttcttgatgaagctgatgaaatgctctctcgtg 775
Query: 733 gtttcaaggaccagatctatgacatattccagcttcttccaccaaagatccaagttggtg 792
|||||||||| ||||| || ||||| |||||||||||||| | ||| | || |||||||
Sbjct: 776 gtttcaaggatcagatatacgacatcttccagcttcttccttccaaggttcaggttggtg 835
Query: 793 tgttctccgcaacaatgccaccagaagctcttgagatcacaaggaagttcatgagcaagc 852
| ||||| || |||||||| || ||||| ||||||||||||||||||||||||| ||| |
Sbjct: 836 ttttctctgctacaatgcctcccgaagcccttgagatcacaaggaagttcatgaacaaac 895
Query: 853 cagtgagaatcttggtgaagcgtgatgagcttacccttgaaggtatcaagcagttctacg 912
|||| || || |||| ||||| || ||||| || |||||||||||||||||||| || |
Sbjct: 896 cagtcaggattctggtcaagcgagacgagctgactcttgaaggtatcaagcagttttatg 955
Query: 913 tcaacgttgagaaagaagagtggaagctcgagacactctgtgatctctacgagactcttg 972
|||| || || || ||||||||||| ||||||||||| || |||||||||||||| || |
Sbjct: 956 tcaatgtagacaaggaagagtggaaactcgagacactatgcgatctctacgagacactgg 1015
Query: 973 ccatcactcagagtgtcatcttcgtgaacaccaggcgtaaggttgattggctcacagaca 1032
|||||||||| || |||||||| |||||||| |||||||||||||||||||| || ||||
Sbjct: 1016 ccatcactcaaagcgtcatctttgtgaacacaaggcgtaaggttgattggctaaccgaca 1075
Query: 1033 aaatgagaagccgtgaccacacagtctctgcaactcacggagacatggaccagaacacca 1092
|||||||||||||||||||||| || || || || ||||||||||||||||||||||| |
Sbjct: 1076 aaatgagaagccgtgaccacactgtttcagctacacacggagacatggaccagaacacaa 1135
Query: 1093 gggacatcatcatgagagagttcaggtctggttcctcccgtgttctcatcaccactgacc 1152
| |||||||||||| | || ||| | ||||| || |||||||| ||||| ||||||||||
Sbjct: 1136 gagacatcatcatgcgcgaattccgctctgggtcttcccgtgtcctcataaccactgacc 1195
Query: 1153 tcttagctcgtggtattgatgtccaacaagtctccctggttatcaacttcgatctcccaa 1212
|| | ||||||||||| ||||| || |||||||| ||||| || ||||| || |||||||
Sbjct: 1196 tccttgctcgtggtatcgatgttcagcaagtctctctggtcataaactttgacctcccaa 1255
Query: 1213 ctcagccagagaactaccttcaccgtatcggaagaagtggaaggttcgggagaaagggtg 1272
| || || ||||| |||||||| ||||| ||||||||||||||||| ||||||||||| |
Sbjct: 1256 cccaaccggagaattaccttcatcgtattggaagaagtggaaggtttgggagaaagggag 1315
Query: 1273 ttgcgatcaatttcgtgacccgtgatgatgagaggatgctgtttgatattcagaaattct 1332
| || ||||||||| |||| || |||||||| ||| || ||||||||||| || |
Sbjct: 1316 tagcaatcaatttcatgacatcggaggatgagagaatgatggctgatattcagaggtttt 1375
Query: 1333 acaatgtggt 1342
||||||||||
Sbjct: 1376 acaatgtggt 1385
Score = 149 bits (75), Expect = 9e-35
Identities = 135/155 (87%)
Strand = Plus / Plus
Query: 291 cttctcaggggtatttatgcttatggttttgagaagccttctgctattcagcaaagagga 350
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 334 cttctcaggggtatttatgcttacggtttcgagaagccttctgctattcagcaaagagga 393
Query: 351 atcgtccccttctgtaagggtcttgatgtgattcaacaggctcagtctggtactgggaaa 410
|| | || ||||| ||||||||||||||||| || || ||||| ||||| ||||| ||
Sbjct: 394 attattccattctgcaagggtcttgatgtgatccagcaagctcaatctggaactggaaag 453
Query: 411 acagcaactttctgctctggtgtcttgcagcagct 445
|| || || || ||||||||||| || ||||||||
Sbjct: 454 accgctaccttttgctctggtgttttacagcagct 488
>At1g32240.1 68414.m03966 myb family transcription factor (KAN2) contains Pfam
profile: PF00249 myb-like DNA-binding domain; identical
to cDNA GARP-like putative transcription factor KANADI2
(KAN2) GI:15723594
Length = 1620
Score = 48.1 bits (24), Expect = 3e-04
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1696 ttttaagctaaaaaaaaaaaaaaa 1719
||||||||||||||||||||||||
Sbjct: 1555 ttttaagctaaaaaaaaaaaaaaa 1532
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1708 aaaaaaaaaaaaaaact 1724
|||||||||||||||||
Sbjct: 1546 aaaaaaaaaaaaaaact 1530
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to SP|P23394
Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 2523
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 489 actagagagcttgctcagcaaattgag 515
|||||||||||||||||||| ||||||
Sbjct: 1284 actagagagcttgctcagcagattgag 1310
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 89,413
Number of Sequences: 29161
Number of extensions: 89413
Number of successful extensions: 5663
Number of sequences better than 10.0: 300
length of query: 1729
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1711
effective length of database: 43,533,334
effective search space: 74485534474
effective search space used: 74485534474
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)