BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.7568.C1
(1881 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02470.1 68416.m00235 adenosylmethionine decarboxylase f... 3501 0.0
At5g15950.1 68418.m01865 adenosylmethionine decarboxylase f... 232 9e-60
At3g25570.1 68416.m03180 adenosylmethionine decarboxylase f... 92 2e-17
At5g54760.1 68418.m06820 eukaryotic translation initiation ... 44 0.004
At5g18930.1 68418.m02248 adenosylmethionine decarboxylase f... 40 0.067
>At3g02470.1 68416.m00235 adenosylmethionine decarboxylase family protein contains
Pfam profile: PF01536 adenosylmethionine decarboxylase
Length = 1953
Score = 3501 bits (1766), Expect = 0.0
Identities = 1766/1766 (100%)
Strand = Plus / Plus
Query: 116 ggtttgagggtttcgtttgatatctggagaaaggggtttctggaaacaaggagttcataa 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtttgagggtttcgtttgatatctggagaaaggggtttctggaaacaaggagttcataa 247
Query: 176 ttcgcgatcttgatctatcgatcttcatttatatataaaagcgtgaatgagattatgatg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttcgcgatcttgatctatcgatcttcatttatatataaaagcgtgaatgagattatgatg 307
Query: 236 gagtcgaaaggtggtaaaaagaagtccagcagtagtagttccttattttacgaagctccc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gagtcgaaaggtggtaaaaagaagtccagcagtagtagttccttattttacgaagctccc 367
Query: 296 ctcggttacagcattgaagacgttcgtccaaacggtggaatcaagaaattcaaatcttct 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctcggttacagcattgaagacgttcgtccaaacggtggaatcaagaaattcaaatcttct 427
Query: 356 gtctactcaaactgctccaagaggccatcctgagtaccagcgtgcaccgatcttcataat 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gtctactcaaactgctccaagaggccatcctgagtaccagcgtgcaccgatcttcataat 487
Query: 416 atagttatagctttctttactttccagtttataattttcttctttcaaagctccttttct 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atagttatagctttctttactttccagtttataattttcttctttcaaagctccttttct 547
Query: 476 gctggttcccggatccaatcgttctctcctcctactacaagtcctgtcgctcacacaaca 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gctggttcccggatccaatcgttctctcctcctactacaagtcctgtcgctcacacaaca 607
Query: 536 aggcgagatggccttatctgcaatcggtttcgaaggttacgagaaacggctcgaggtgac 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aggcgagatggccttatctgcaatcggtttcgaaggttacgagaaacggctcgaggtgac 667
Query: 596 tttctttgagccaagcatctttcaagactccaagggactgggactccgtgctctgaccaa 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttctttgagccaagcatctttcaagactccaagggactgggactccgtgctctgaccaa 727
Query: 656 gtcccagcttgatgaaattcttacacctgctgcatgcacgatcgtttcatctctctccaa 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gtcccagcttgatgaaattcttacacctgctgcatgcacgatcgtttcatctctctccaa 787
Query: 716 cgatcaattggactcttacgtactctctgagtccagcttctttgtctacccctacaaagt 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cgatcaattggactcttacgtactctctgagtccagcttctttgtctacccctacaaagt 847
Query: 776 catcatcaagacttgcggtaccactaagctcctcctctctatcccaccacttctaaagct 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 catcatcaagacttgcggtaccactaagctcctcctctctatcccaccacttctaaagct 907
Query: 836 ggctggtgagctctctctgagtgtcaagtctgtgaagtacactcgcggctccttcctctg 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ggctggtgagctctctctgagtgtcaagtctgtgaagtacactcgcggctccttcctctg 967
Query: 896 ccccggaggccagccttttcctcaccgcagcttctctgaagaagtctctgttcttgatgg 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 ccccggaggccagccttttcctcaccgcagcttctctgaagaagtctctgttcttgatgg 1027
Query: 956 gcactttactcagctgggcttgaacagcgtagcctacttgatgggcaatgatgatgagac 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 gcactttactcagctgggcttgaacagcgtagcctacttgatgggcaatgatgatgagac 1087
Query: 1016 taagaaatggcatgtctatgctgcctctgcccaggactccagcaactgcaacaacaatgt 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 taagaaatggcatgtctatgctgcctctgcccaggactccagcaactgcaacaacaatgt 1147
Query: 1076 ctacactctcgagatgtgcatgactggtctggacagagagaaagctgctgtcttctacaa 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 ctacactctcgagatgtgcatgactggtctggacagagagaaagctgctgtcttctacaa 1207
Query: 1136 ggatgaagctgacaagactgggtcaatgactgataactctggaatcagaaagatccttcc 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 ggatgaagctgacaagactgggtcaatgactgataactctggaatcagaaagatccttcc 1267
Query: 1196 caagtctgagatctgcgactttgaattcgagccctgcggctactctatgaactcaattga 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1268 caagtctgagatctgcgactttgaattcgagccctgcggctactctatgaactcaattga 1327
Query: 1256 aggggatgcaatctccacgatccatgtgacccctgaagatgggtttagctacgctagctt 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1328 aggggatgcaatctccacgatccatgtgacccctgaagatgggtttagctacgctagctt 1387
Query: 1316 cgaagctgtgggttacgacttcaacacccttgaccttagccagctggtgacaagggttct 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388 cgaagctgtgggttacgacttcaacacccttgaccttagccagctggtgacaagggttct 1447
Query: 1376 ctcttgcttcgagcccaagcaattctctgtagctgtgcactcgagcgttggagcgaactc 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1448 ctcttgcttcgagcccaagcaattctctgtagctgtgcactcgagcgttggagcgaactc 1507
Query: 1436 atacaagccagagattactgtagacttggaagactatgggtgcagagagaggacatttga 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1508 atacaagccagagattactgtagacttggaagactatgggtgcagagagaggacatttga 1567
Query: 1496 gtctctaggagaagagagtggaacagtgatgtatcagacgtttgagaagcttggtaagta 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1568 gtctctaggagaagagagtggaacagtgatgtatcagacgtttgagaagcttggtaagta 1627
Query: 1556 ctgtggatcgcctagatctaccttgaagtgtgaatggagcagcaacaatagctgcagcag 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1628 ctgtggatcgcctagatctaccttgaagtgtgaatggagcagcaacaatagctgcagcag 1687
Query: 1616 cgaggacgagaaggacgagggaatctagcagaatttttcttcctaataactattttcgag 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1688 cgaggacgagaaggacgagggaatctagcagaatttttcttcctaataactattttcgag 1747
Query: 1676 ctttctgtttttgttctttctttttaaaaaacttattaagttcttatgaataatgacttg 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1748 ctttctgtttttgttctttctttttaaaaaacttattaagttcttatgaataatgacttg 1807
Query: 1736 tgaagtttgagttcgtctccttcacaagcaagttgtattggtgttttctactttatgaat 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1808 tgaagtttgagttcgtctccttcacaagcaagttgtattggtgttttctactttatgaat 1867
Query: 1796 atgggttttatatacctaaagacttgttatgttattattcttaaatgttgctgctatgat 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1868 atgggttttatatacctaaagacttgttatgttattattcttaaatgttgctgctatgat 1927
Query: 1856 gattactattatcgatttttactatt 1881
||||||||||||||||||||||||||
Sbjct: 1928 gattactattatcgatttttactatt 1953
Score = 172 bits (87), Expect = 7e-42
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 32 aaatcatcaacttaatcgtttctctcaaatttagggttttctcttttctcgaaagtcttg 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaatcatcaacttaatcgtttctctcaaatttagggttttctcttttctcgaaagtcttg 60
Query: 92 cggttttctgaatcatctctatctggt 118
|||||||||||||||||||||||||||
Sbjct: 61 cggttttctgaatcatctctatctggt 87
>At5g15950.1 68418.m01865 adenosylmethionine decarboxylase family protein
contains Pfam profile: PF01536 adenosylmethionine
decarboxylase
Length = 1748
Score = 232 bits (117), Expect = 9e-60
Identities = 165/181 (91%)
Strand = Plus / Plus
Query: 212 aaaagcgtgaatgagattatgatggagtcgaaaggtggtaaaaagaagtccagcagtagt 271
|||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||| | |
Sbjct: 172 aaaagcgtgaatgagattatgatggaatcgaaagctggtaataagaagtcaagcagcaat 231
Query: 272 agttccttattttacgaagctcccctcggttacagcattgaagacgttcgtccaaacggt 331
|||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct: 232 agttccttatgttacgaagcaccccttggttacagcattgaagacgttcgtcctttcggt 291
Query: 332 ggaatcaagaaattcaaatcttctgtctactcaaactgctccaagaggccatcctgagta 391
|||||||||||||||||||||||||||||||| |||||| | |||||||| |||||||||
Sbjct: 292 ggaatcaagaaattcaaatcttctgtctactccaactgcgctaagaggccttcctgagta 351
Query: 392 c 392
|
Sbjct: 352 c 352
Score = 176 bits (89), Expect = 4e-43
Identities = 134/149 (89%)
Strand = Plus / Plus
Query: 1494 gagtctctaggagaagagagtggaacagtgatgtatcagacgtttgagaagcttggtaag 1553
|||||||||||||||||||| ||||||||||||||||||| |||||||||||| || | |
Sbjct: 1415 gagtctctaggagaagagagaggaacagtgatgtatcagaggtttgagaagctaggaagg 1474
Query: 1554 tactgtggatcgcctagatctaccttgaagtgtgaatggagcagcaacaatagctgcagc 1613
|| ||||| || || |||||||||||||| ||||| ||||||||||||| |||||||| |
Sbjct: 1475 tattgtggttctccgagatctaccttgaaatgtgagtggagcagcaacagtagctgcaac 1534
Query: 1614 agcgaggacgagaaggacgagggaatcta 1642
||||||||||||||||| ||||||||||
Sbjct: 1535 agcgaggacgagaaggaatagggaatcta 1563
Score = 133 bits (67), Expect = 6e-30
Identities = 124/143 (86%)
Strand = Plus / Plus
Query: 888 ttcctctgccccggaggccagccttttcctcaccgcagcttctctgaagaagtctctgtt 947
|||||||| || ||||| || || || |||||||||| ||||||||||||||||||||||
Sbjct: 812 ttcctctgtcctggaggacaaccattccctcaccgcaacttctctgaagaagtctctgtt 871
Query: 948 cttgatgggcactttactcagctgggcttgaacagcgtagcctacttgatgggcaatgat 1007
|||||||| |||||| || |||| || || | ||| || ||||||||||||||||||||
Sbjct: 872 cttgatggtcactttgctaagcttggtttaagcagtgttgcctacttgatgggcaatgac 931
Query: 1008 gatgagactaagaaatggcatgt 1030
||||| || ||||||||||||||
Sbjct: 932 gatgaaaccaagaaatggcatgt 954
Score = 119 bits (60), Expect = 9e-26
Identities = 111/128 (86%)
Strand = Plus / Plus
Query: 690 tgcacgatcgtttcatctctctccaacgatcaattggactcttacgtactctctgagtcc 749
||||| ||||| ||||||||||| |||||||| | |||||||| || ||||||||||||
Sbjct: 614 tgcactatcgtctcatctctctcgaacgatcagcttgactcttatgttctctctgagtcc 673
Query: 750 agcttctttgtctacccctacaaagtcatcatcaagacttgcggtaccactaagctcctc 809
|| ||||| ||| ||| ||||| || ||||||||||||||||||| ||||||||||||
Sbjct: 674 agtctctttatcttcccgtacaagatcgtcatcaagacttgcggtactactaagctcctc 733
Query: 810 ctctctat 817
||||||||
Sbjct: 734 ctctctat 741
Score = 101 bits (51), Expect = 2e-20
Identities = 207/259 (79%)
Strand = Plus / Plus
Query: 1161 atgactgataactctggaatcagaaagatccttcccaagtctgagatctgcgactttgaa 1220
||||||||||||||||| ||||||||||| || || | || | ||||| ||||||||
Sbjct: 1082 atgactgataactctggcatcagaaagatactgcctcaatcccaaatctgtgactttgag 1141
Query: 1221 ttcgagccctgcggctactctatgaactcaattgaaggggatgcaatctccacgatccat 1280
|| |||||||| |||||||| |||||| || ||||| || |||||||| || ||||||
Sbjct: 1142 tttgagccctgtggctactcaatgaacagcatcgaaggcgacgcaatctctaccatccat 1201
Query: 1281 gtgacccctgaagatgggtttagctacgctagcttcgaagctgtgggttacgacttcaac 1340
|| || || || ||||| || |||||||||||||| ||||| ||||| || || ||||
Sbjct: 1202 gtaactccagaggatggtttcagctacgctagctttgaagcagtgggatatgatttcaca 1261
Query: 1341 acccttgaccttagccagctggtgacaagggttctctcttgcttcgagcccaagcaattc 1400
||| | ||| | ||||| || || ||| ||| || |||||||| | || || ||||||
Sbjct: 1262 accatggacttgagccatcttgtctcaaaggtactaacttgcttcaaaccaaaacaattc 1321
Query: 1401 tctgtagctgtgcactcga 1419
||||||||||| |||||||
Sbjct: 1322 tctgtagctgtccactcga 1340
Score = 67.9 bits (34), Expect = 3e-10
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 1055 cagcaactgcaacaacaatgtctacactctcgagatgtgcatgactggtctggacagaga 1114
||||||| ||| |||||||||||||| || |||||||| ||||||||||| |||| |||
Sbjct: 976 cagcaacaacaagaacaatgtctacacgcttgagatgtgtatgactggtctagacaaaga 1035
Query: 1115 gaaagctgctgtcttctacaag 1136
|| || ||||||||||||||
Sbjct: 1036 caaggcatctgtcttctacaag 1057
Score = 63.9 bits (32), Expect = 5e-09
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 540 gagatggccttatctgcaatcggtttcgaaggttacgagaaacggctcgaggtgactttc 599
||||||||| | ||||| || || ||||||||||||||||| ||||| || || ||||||
Sbjct: 464 gagatggccatgtctgctattggcttcgaaggttacgagaagcggcttgaagttactttc 523
Query: 600 tttgagcc 607
||||||||
Sbjct: 524 tttgagcc 531
>At3g25570.1 68416.m03180 adenosylmethionine decarboxylase family protein
contains Pfam profile: PF01536 adenosylmethionine
decarboxylase
Length = 1527
Score = 91.7 bits (46), Expect = 2e-17
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 286 cgaagctcccctcggttacagcattgaagacgttcgtccaaacggtggaatcaagaaatt 345
||||||||| || |||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 63 cgaagctcctcttcgttacagcattgaagacgttagaccaaacggtggaatcaagaaatt 122
Query: 346 caaatcttctgtctactcaaac 367
|| |||| ||| |||||||||
Sbjct: 123 cagatctgctgcttactcaaac 144
Score = 71.9 bits (36), Expect = 2e-11
Identities = 117/144 (81%)
Strand = Plus / Plus
Query: 1172 ctctggaatcagaaagatccttcccaagtctgagatctgcgactttgaattcgagccctg 1231
|||||| |||||||| |||||||| ||||| ||||| || ||| | || || || ||
Sbjct: 933 ctctgggatcagaaacatccttccaggctctgaaatctgtgattttaactttgaaccgtg 992
Query: 1232 cggctactctatgaactcaattgaaggggatgcaatctccacgatccatgtgacccctga 1291
||| ||||| ||||| || |||||||||||||| | || || |||||||||||||| ||
Sbjct: 993 cggttactcgatgaattcgattgaaggggatgcggtttctaccatccatgtgaccccgga 1052
Query: 1292 agatgggtttagctacgctagctt 1315
|||||| |||||||| || |||||
Sbjct: 1053 agatggttttagctatgcaagctt 1076
Score = 48.1 bits (24), Expect = 3e-04
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 726 gactcttacgtactctctgagtccagcttctttgtctacccctacaaagtcatcatcaag 785
||||||||||| |||||||| || || ||||||| || || ||||| ||||||||||
Sbjct: 481 gactcttacgtgctctctgaatctagtctctttgtttatccttacaagatcatcatcaaa 540
Query: 786 acttgcggtaccactaagct 805
|| ||||| || ||||||||
Sbjct: 541 acatgcgggactactaagct 560
Score = 44.1 bits (22), Expect = 0.004
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 233 atggagtcgaaaggtggtaaaaagaagtccagcagtagtagt 274
|||||| | |||||||||||||||||||| || | |||||||
Sbjct: 1 atggagactaaaggtggtaaaaagaagtctagtaatagtagt 42
Score = 34.2 bits (17), Expect = 4.1
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1086 gagatgtgcatgactggtctggaca 1110
|||||||| ||||||||||| ||||
Sbjct: 847 gagatgtgtatgactggtctagaca 871
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor SUI1,
putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 706
Score = 44.1 bits (22), Expect = 0.004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 caaatttagggttttctctttt 78
||||||||||||||||||||||
Sbjct: 28 caaatttagggttttctctttt 49
>At5g18930.1 68418.m02248 adenosylmethionine decarboxylase family protein contains
Pfam profile: PF01536 adenosylmethionine decarboxylase
Length = 1044
Score = 40.1 bits (20), Expect = 0.067
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1287 cctgaagatgggtttagctacgctagcttcga 1318
|||||||| || ||||||||||| ||||||||
Sbjct: 757 cctgaagacggttttagctacgcgagcttcga 788
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,224
Number of Sequences: 29161
Number of extensions: 66224
Number of successful extensions: 1562
Number of sequences better than 10.0: 40
length of query: 1881
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1863
effective length of database: 43,533,334
effective search space: 81102601242
effective search space used: 81102601242
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)