BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV789624_RAFL06_84_F13.r
         (331 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_824399.1|  hypothetical protein SAV3223 [Streptomyces...    30   8.7  
gb|EAL00545.1|  hypothetical protein CaO19.7671 [Candida alb...    30   8.7  
ref|ZP_00280660.1|  COG1305: Transglutaminase-like enzymes, ...    30   8.7  

>ref|NP_824399.1| hypothetical protein SAV3223 [Streptomyces avermitilis
           MA-4680]|gi|29606874|dbj|BAC70934.1| hypothetical
           protein [Streptomyces avermitilis MA-4680]
          Length = 716

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 18/44 (40%), Positives = 22/44 (49%)
 Frame = +3

Query: 186 QERCCETPTPKGTTPLSSF*KKNPVGEKG*KTPPGLEYFKPPSP 317
           Q R  + PT +GTT       K P G +G  TPPG    KP +P
Sbjct: 52  QARTGDAPTGQGTTTPCG---KGPSGGQGTPTPPGAGGAKPSTP 92



>gb|EAL00545.1| hypothetical protein CaO19.7671 [Candida albicans SC5314]
          Length = 349

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 11/23 (47%), Positives = 16/23 (68%)
 Frame = +2

Query: 203 DPNTKRHNPIEFLLKKKPRWGKR 271
           +PNTK H+PI    +++PRW  R
Sbjct: 267 NPNTKTHHPITGQARRRPRWRPR 289



>ref|ZP_00280660.1| COG1305: Transglutaminase-like enzymes, putative cysteine proteases
           [Burkholderia fungorum LB400]
          Length = 302

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 289 AWNTLSPLPLWGTW 330
           AWN    LPLWGTW
Sbjct: 269 AWNAYQALPLWGTW 282



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 85
effective length of database: 468,612,588
effective search space used: 11246702112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)