BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.6771.C2
(1829 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/... 3552 0.0
At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/... 2942 0.0
At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/... 2942 0.0
At1g73110.1 68414.m08453 ribulose bisphosphate carboxylase/... 54 4e-06
At4g09770.1 68417.m01605 meprin and TRAF homology domain-co... 52 2e-05
>At2g39730.1 68415.m04877 ribulose bisphosphate carboxylase/oxygenase activase /
RuBisCO activase identical to SWISS-PROT:P10896 ribulose
bisphosphate carboxylase/oxygenase activase, chloroplast
precursor (RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 1833
Score = 3552 bits (1792), Expect = 0.0
Identities = 1792/1792 (100%)
Strand = Plus / Plus
Query: 1 aacttggccaatccgcatcgtgtggcgatcagagagttaagccttgaagacgaagagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacttggccaatccgcatcgtgtggcgatcagagagttaagccttgaagacgaagagata 60
Query: 61 acgaattggttgttgatcactcgctttataaatctctcagtttcttgctcacaccaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgaattggttgttgatcactcgctttataaatctctcagtttcttgctcacaccaacat 120
Query: 121 ctctctaagcttcttcttctaccaatctaattcctctcttcagcttcttgtgttgtgacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctctctaagcttcttcttctaccaatctaattcctctcttcagcttcttgtgttgtgacg 180
Query: 181 catactcgtcgcagtcttgagatatggccgccgcagtttccaccgtcggtgccatcaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catactcgtcgcagtcttgagatatggccgccgcagtttccaccgtcggtgccatcaaca 240
Query: 241 gagctccgttgagcttgaacgggtcaggatcaggagctgtatcagccccagcttcaacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gagctccgttgagcttgaacgggtcaggatcaggagctgtatcagccccagcttcaacct 300
Query: 301 tcttgggaaagaaagttgtaactgtgtcgagattcgcacagagcaacaagaagagcaacg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcttgggaaagaaagttgtaactgtgtcgagattcgcacagagcaacaagaagagcaacg 360
Query: 361 gatcattcaaggtgttggctgtgaaagaagacaaacaaaccgatggagacagatggagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gatcattcaaggtgttggctgtgaaagaagacaaacaaaccgatggagacagatggagag 420
Query: 421 gtcttgcctacgacacttctgatgatcaacaagacatcaccagaggcaagggtatggttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcttgcctacgacacttctgatgatcaacaagacatcaccagaggcaagggtatggttg 480
Query: 481 actctgtcttccaagctcctatgggaaccggaactcaccacgctgtccttagctcatacg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 actctgtcttccaagctcctatgggaaccggaactcaccacgctgtccttagctcatacg 540
Query: 541 aatacgttagccaaggccttaggcagtacaacttggacaacatgatggatgggttttaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aatacgttagccaaggccttaggcagtacaacttggacaacatgatggatgggttttaca 600
Query: 601 ttgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgc 660
Query: 661 ctaacatcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatcct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctaacatcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatcct 720
Query: 721 tccagtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tccagtgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgctggag 780
Query: 781 agcttgagagtggaaacgcaggagaacccgcaaagcttatccgtcagaggtaccgtgagg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 agcttgagagtggaaacgcaggagaacccgcaaagcttatccgtcagaggtaccgtgagg 840
Query: 841 cagctgacttgatcaagaagggaaagatgtgttgtctcttcatcaacgatcttgacgctg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cagctgacttgatcaagaagggaaagatgtgttgtctcttcatcaacgatcttgacgctg 900
Query: 901 gtgcgggtcgtatgggtggtactactcagtacactgtcaacaaccagatggttaacgcaa 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gtgcgggtcgtatgggtggtactactcagtacactgtcaacaaccagatggttaacgcaa 960
Query: 961 cactcatgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaagg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 cactcatgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaagg 1020
Query: 1021 aagagaacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctc 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aagagaacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctc 1080
Query: 1081 ctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgta 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ctctcatccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgta 1140
Query: 1141 tcggtgtctgcaagggtatcttcagaactgacaagatcaaggacgaagacattgtcacac 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tcggtgtctgcaagggtatcttcagaactgacaagatcaaggacgaagacattgtcacac 1200
Query: 1201 ttgttgatcagttccctggtcaatctatcgatttcttcggtgctttgagggcgagagtgt 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ttgttgatcagttccctggtcaatctatcgatttcttcggtgctttgagggcgagagtgt 1260
Query: 1261 acgatgatgaagtgaggaagttcgttgagagccttggagttgagaagatcggaaagaggc 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 acgatgatgaagtgaggaagttcgttgagagccttggagttgagaagatcggaaagaggc 1320
Query: 1321 tggttaactcaagggaaggacctcccgtgttcgagcaacccgagatgacttatgagaagc 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 tggttaactcaagggaaggacctcccgtgttcgagcaacccgagatgacttatgagaagc 1380
Query: 1381 ttatggaatacggaaacatgcttgtgatggaacaagagaatgtcaagagagtccaacttg 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ttatggaatacggaaacatgcttgtgatggaacaagagaatgtcaagagagtccaacttg 1440
Query: 1441 ccgagacctacctcagccaggctgctttgggagacgcaaacgctgacgccatcggccgcg 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 ccgagacctacctcagccaggctgctttgggagacgcaaacgctgacgccatcggccgcg 1500
Query: 1501 gaactttctacggaaaaggagcccagcaagtaaacctgccagttcctgaagggtgtactg 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 gaactttctacggaaaaggagcccagcaagtaaacctgccagttcctgaagggtgtactg 1560
Query: 1561 atcctgtggctgaaaactttgatccaacggctagaagtgacgatggaacctgtgtctaca 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 atcctgtggctgaaaactttgatccaacggctagaagtgacgatggaacctgtgtctaca 1620
Query: 1621 acttttgagcaatattatcctgcttattaatttgctgttttactcctattgtctcttttg 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 acttttgagcaatattatcctgcttattaatttgctgttttactcctattgtctcttttg 1680
Query: 1681 gtttatttttctcctttgtgtaattgtggattggatcttgtcctcttttgttcccttttt 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 gtttatttttctcctttgtgtaattgtggattggatcttgtcctcttttgttcccttttt 1740
Query: 1741 ttttttttatgatgtacaacacattggtaatttaaaattgccttgtcataaa 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 ttttttttatgatgtacaacacattggtaatttaaaattgccttgtcataaa 1792
Score = 34.2 bits (17), Expect = 4.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1786 tcataaaaaaaaaaaaa 1802
|||||||||||||||||
Sbjct: 1752 tcataaaaaaaaaaaaa 1736
>At2g39730.3 68415.m04879 ribulose bisphosphate carboxylase/oxygenase activase /
RuBisCO activase identical to SWISS-PROT:P10896 ribulose
bisphosphate carboxylase/oxygenase activase, chloroplast
precursor (RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 1928
Score = 2942 bits (1484), Expect = 0.0
Identities = 1484/1484 (100%)
Strand = Plus / Plus
Query: 30 cagagagttaagccttgaagacgaagagataacgaattggttgttgatcactcgctttat 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagagagttaagccttgaagacgaagagataacgaattggttgttgatcactcgctttat 60
Query: 90 aaatctctcagtttcttgctcacaccaacatctctctaagcttcttcttctaccaatcta 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaatctctcagtttcttgctcacaccaacatctctctaagcttcttcttctaccaatcta 120
Query: 150 attcctctcttcagcttcttgtgttgtgacgcatactcgtcgcagtcttgagatatggcc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attcctctcttcagcttcttgtgttgtgacgcatactcgtcgcagtcttgagatatggcc 180
Query: 210 gccgcagtttccaccgtcggtgccatcaacagagctccgttgagcttgaacgggtcagga 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gccgcagtttccaccgtcggtgccatcaacagagctccgttgagcttgaacgggtcagga 240
Query: 270 tcaggagctgtatcagccccagcttcaaccttcttgggaaagaaagttgtaactgtgtcg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaggagctgtatcagccccagcttcaaccttcttgggaaagaaagttgtaactgtgtcg 300
Query: 330 agattcgcacagagcaacaagaagagcaacggatcattcaaggtgttggctgtgaaagaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agattcgcacagagcaacaagaagagcaacggatcattcaaggtgttggctgtgaaagaa 360
Query: 390 gacaaacaaaccgatggagacagatggagaggtcttgcctacgacacttctgatgatcaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gacaaacaaaccgatggagacagatggagaggtcttgcctacgacacttctgatgatcaa 420
Query: 450 caagacatcaccagaggcaagggtatggttgactctgtcttccaagctcctatgggaacc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caagacatcaccagaggcaagggtatggttgactctgtcttccaagctcctatgggaacc 480
Query: 510 ggaactcaccacgctgtccttagctcatacgaatacgttagccaaggccttaggcagtac 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggaactcaccacgctgtccttagctcatacgaatacgttagccaaggccttaggcagtac 540
Query: 570 aacttggacaacatgatggatgggttttacattgctcctgctttcatggacaagcttgtt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aacttggacaacatgatggatgggttttacattgctcctgctttcatggacaagcttgtt 600
Query: 630 gttcacatcaccaagaacttcttgactctgcctaacatcaaggttccacttattttgggt 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gttcacatcaccaagaacttcttgactctgcctaacatcaaggttccacttattttgggt 660
Query: 690 atatggggaggcaaaggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatg 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atatggggaggcaaaggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatg 720
Query: 750 ggtatcaacccaatcatgatgagtgctggagagcttgagagtggaaacgcaggagaaccc 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggtatcaacccaatcatgatgagtgctggagagcttgagagtggaaacgcaggagaaccc 780
Query: 810 gcaaagcttatccgtcagaggtaccgtgaggcagctgacttgatcaagaagggaaagatg 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gcaaagcttatccgtcagaggtaccgtgaggcagctgacttgatcaagaagggaaagatg 840
Query: 870 tgttgtctcttcatcaacgatcttgacgctggtgcgggtcgtatgggtggtactactcag 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tgttgtctcttcatcaacgatcttgacgctggtgcgggtcgtatgggtggtactactcag 900
Query: 930 tacactgtcaacaaccagatggttaacgcaacactcatgaacattgctgataacccaacc 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tacactgtcaacaaccagatggttaacgcaacactcatgaacattgctgataacccaacc 960
Query: 990 aacgtccagctcccaggaatgtacaacaaggaagagaacgcacgtgtccccatcatttgc 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 aacgtccagctcccaggaatgtacaacaaggaagagaacgcacgtgtccccatcatttgc 1020
Query: 1050 actggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaag 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 actggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaag 1080
Query: 1110 ttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggtatcttcagaact 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggtatcttcagaact 1140
Query: 1170 gacaagatcaaggacgaagacattgtcacacttgttgatcagttccctggtcaatctatc 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gacaagatcaaggacgaagacattgtcacacttgttgatcagttccctggtcaatctatc 1200
Query: 1230 gatttcttcggtgctttgagggcgagagtgtacgatgatgaagtgaggaagttcgttgag 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gatttcttcggtgctttgagggcgagagtgtacgatgatgaagtgaggaagttcgttgag 1260
Query: 1290 agccttggagttgagaagatcggaaagaggctggttaactcaagggaaggacctcccgtg 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 agccttggagttgagaagatcggaaagaggctggttaactcaagggaaggacctcccgtg 1320
Query: 1350 ttcgagcaacccgagatgacttatgagaagcttatggaatacggaaacatgcttgtgatg 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 ttcgagcaacccgagatgacttatgagaagcttatggaatacggaaacatgcttgtgatg 1380
Query: 1410 gaacaagagaatgtcaagagagtccaacttgccgagacctacctcagccaggctgctttg 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 gaacaagagaatgtcaagagagtccaacttgccgagacctacctcagccaggctgctttg 1440
Query: 1470 ggagacgcaaacgctgacgccatcggccgcggaactttctacgg 1513
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 ggagacgcaaacgctgacgccatcggccgcggaactttctacgg 1484
Score = 557 bits (281), Expect = e-157
Identities = 281/281 (100%)
Strand = Plus / Plus
Query: 1512 ggaaaaggagcccagcaagtaaacctgccagttcctgaagggtgtactgatcctgtggct 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1607 ggaaaaggagcccagcaagtaaacctgccagttcctgaagggtgtactgatcctgtggct 1666
Query: 1572 gaaaactttgatccaacggctagaagtgacgatggaacctgtgtctacaacttttgagca 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1667 gaaaactttgatccaacggctagaagtgacgatggaacctgtgtctacaacttttgagca 1726
Query: 1632 atattatcctgcttattaatttgctgttttactcctattgtctcttttggtttatttttc 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1727 atattatcctgcttattaatttgctgttttactcctattgtctcttttggtttatttttc 1786
Query: 1692 tcctttgtgtaattgtggattggatcttgtcctcttttgttccctttttttttttttatg 1751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1787 tcctttgtgtaattgtggattggatcttgtcctcttttgttccctttttttttttttatg 1846
Query: 1752 atgtacaacacattggtaatttaaaattgccttgtcataaa 1792
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1847 atgtacaacacattggtaatttaaaattgccttgtcataaa 1887
Score = 34.2 bits (17), Expect = 4.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1786 tcataaaaaaaaaaaaa 1802
|||||||||||||||||
Sbjct: 1847 tcataaaaaaaaaaaaa 1831
>At2g39730.2 68415.m04878 ribulose bisphosphate carboxylase/oxygenase activase /
RuBisCO activase identical to SWISS-PROT:P10896 ribulose
bisphosphate carboxylase/oxygenase activase, chloroplast
precursor (RuBisCO activase, RA)[Arabidopsis thaliana]
Length = 1815
Score = 2942 bits (1484), Expect = 0.0
Identities = 1484/1484 (100%)
Strand = Plus / Plus
Query: 30 cagagagttaagccttgaagacgaagagataacgaattggttgttgatcactcgctttat 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagagagttaagccttgaagacgaagagataacgaattggttgttgatcactcgctttat 60
Query: 90 aaatctctcagtttcttgctcacaccaacatctctctaagcttcttcttctaccaatcta 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaatctctcagtttcttgctcacaccaacatctctctaagcttcttcttctaccaatcta 120
Query: 150 attcctctcttcagcttcttgtgttgtgacgcatactcgtcgcagtcttgagatatggcc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attcctctcttcagcttcttgtgttgtgacgcatactcgtcgcagtcttgagatatggcc 180
Query: 210 gccgcagtttccaccgtcggtgccatcaacagagctccgttgagcttgaacgggtcagga 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gccgcagtttccaccgtcggtgccatcaacagagctccgttgagcttgaacgggtcagga 240
Query: 270 tcaggagctgtatcagccccagcttcaaccttcttgggaaagaaagttgtaactgtgtcg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaggagctgtatcagccccagcttcaaccttcttgggaaagaaagttgtaactgtgtcg 300
Query: 330 agattcgcacagagcaacaagaagagcaacggatcattcaaggtgttggctgtgaaagaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agattcgcacagagcaacaagaagagcaacggatcattcaaggtgttggctgtgaaagaa 360
Query: 390 gacaaacaaaccgatggagacagatggagaggtcttgcctacgacacttctgatgatcaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gacaaacaaaccgatggagacagatggagaggtcttgcctacgacacttctgatgatcaa 420
Query: 450 caagacatcaccagaggcaagggtatggttgactctgtcttccaagctcctatgggaacc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caagacatcaccagaggcaagggtatggttgactctgtcttccaagctcctatgggaacc 480
Query: 510 ggaactcaccacgctgtccttagctcatacgaatacgttagccaaggccttaggcagtac 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggaactcaccacgctgtccttagctcatacgaatacgttagccaaggccttaggcagtac 540
Query: 570 aacttggacaacatgatggatgggttttacattgctcctgctttcatggacaagcttgtt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aacttggacaacatgatggatgggttttacattgctcctgctttcatggacaagcttgtt 600
Query: 630 gttcacatcaccaagaacttcttgactctgcctaacatcaaggttccacttattttgggt 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gttcacatcaccaagaacttcttgactctgcctaacatcaaggttccacttattttgggt 660
Query: 690 atatggggaggcaaaggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatg 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atatggggaggcaaaggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatg 720
Query: 750 ggtatcaacccaatcatgatgagtgctggagagcttgagagtggaaacgcaggagaaccc 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggtatcaacccaatcatgatgagtgctggagagcttgagagtggaaacgcaggagaaccc 780
Query: 810 gcaaagcttatccgtcagaggtaccgtgaggcagctgacttgatcaagaagggaaagatg 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gcaaagcttatccgtcagaggtaccgtgaggcagctgacttgatcaagaagggaaagatg 840
Query: 870 tgttgtctcttcatcaacgatcttgacgctggtgcgggtcgtatgggtggtactactcag 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tgttgtctcttcatcaacgatcttgacgctggtgcgggtcgtatgggtggtactactcag 900
Query: 930 tacactgtcaacaaccagatggttaacgcaacactcatgaacattgctgataacccaacc 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tacactgtcaacaaccagatggttaacgcaacactcatgaacattgctgataacccaacc 960
Query: 990 aacgtccagctcccaggaatgtacaacaaggaagagaacgcacgtgtccccatcatttgc 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 aacgtccagctcccaggaatgtacaacaaggaagagaacgcacgtgtccccatcatttgc 1020
Query: 1050 actggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaag 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 actggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaag 1080
Query: 1110 ttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggtatcttcagaact 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ttctactgggccccgacccgtgaagaccgtatcggtgtctgcaagggtatcttcagaact 1140
Query: 1170 gacaagatcaaggacgaagacattgtcacacttgttgatcagttccctggtcaatctatc 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gacaagatcaaggacgaagacattgtcacacttgttgatcagttccctggtcaatctatc 1200
Query: 1230 gatttcttcggtgctttgagggcgagagtgtacgatgatgaagtgaggaagttcgttgag 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gatttcttcggtgctttgagggcgagagtgtacgatgatgaagtgaggaagttcgttgag 1260
Query: 1290 agccttggagttgagaagatcggaaagaggctggttaactcaagggaaggacctcccgtg 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 agccttggagttgagaagatcggaaagaggctggttaactcaagggaaggacctcccgtg 1320
Query: 1350 ttcgagcaacccgagatgacttatgagaagcttatggaatacggaaacatgcttgtgatg 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 ttcgagcaacccgagatgacttatgagaagcttatggaatacggaaacatgcttgtgatg 1380
Query: 1410 gaacaagagaatgtcaagagagtccaacttgccgagacctacctcagccaggctgctttg 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 gaacaagagaatgtcaagagagtccaacttgccgagacctacctcagccaggctgctttg 1440
Query: 1470 ggagacgcaaacgctgacgccatcggccgcggaactttctacgg 1513
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 ggagacgcaaacgctgacgccatcggccgcggaactttctacgg 1484
Score = 557 bits (281), Expect = e-157
Identities = 281/281 (100%)
Strand = Plus / Plus
Query: 1512 ggaaaaggagcccagcaagtaaacctgccagttcctgaagggtgtactgatcctgtggct 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 ggaaaaggagcccagcaagtaaacctgccagttcctgaagggtgtactgatcctgtggct 1553
Query: 1572 gaaaactttgatccaacggctagaagtgacgatggaacctgtgtctacaacttttgagca 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 gaaaactttgatccaacggctagaagtgacgatggaacctgtgtctacaacttttgagca 1613
Query: 1632 atattatcctgcttattaatttgctgttttactcctattgtctcttttggtttatttttc 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 atattatcctgcttattaatttgctgttttactcctattgtctcttttggtttatttttc 1673
Query: 1692 tcctttgtgtaattgtggattggatcttgtcctcttttgttccctttttttttttttatg 1751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1674 tcctttgtgtaattgtggattggatcttgtcctcttttgttccctttttttttttttatg 1733
Query: 1752 atgtacaacacattggtaatttaaaattgccttgtcataaa 1792
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1734 atgtacaacacattggtaatttaaaattgccttgtcataaa 1774
Score = 34.2 bits (17), Expect = 4.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1786 tcataaaaaaaaaaaaa 1802
|||||||||||||||||
Sbjct: 1734 tcataaaaaaaaaaaaa 1718
>At1g73110.1 68414.m08453 ribulose bisphosphate carboxylase/oxygenase activase,
putative / RuBisCO activase, putative similar to ribulose
bisphosphate carboxylase/oxygenase activase, chloroplast
precursor (RuBisCO activase, RA) [Oryza sativa]
SWISS-PROT:P93431
Length = 1437
Score = 54.0 bits (27), Expect = 4e-06
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 1056 aacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttctac 1115
||||||||||| || || || ||||| || |||||||| ||| | |||||||||||||||
Sbjct: 908 aacgatttctctacactgtatgctccactgatccgtgaaggaagaatggagaagttctac 967
Query: 1116 tgg 1118
|||
Sbjct: 968 tgg 970
Score = 40.1 bits (20), Expect = 0.065
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 681 attttgggtatatggggaggcaaaggtcaagg 712
||||| |||||||||||||| ||||| |||||
Sbjct: 530 attttaggtatatggggaggtaaaggacaagg 561
>At4g09770.1 68417.m01605 meprin and TRAF homology domain-containing protein /
MATH domain-containing protein low similarity to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1098
Score = 52.0 bits (26), Expect = 2e-05
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 1789 taaaaaaaaaaaaaaaaaaaaaaaaa 1814
||||||||||||||||||||||||||
Sbjct: 1045 taaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1803 aaaaaaaaaaaaaaaaaaaaaaaaa 1827
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1794 aaaaaaaaaaaaaaaaaaaaaaaaa 1818
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1799 aaaaaaaaaaaaaaaaaaaaaaaaa 1823
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1795 aaaaaaaaaaaaaaaaaaaaaaaaa 1819
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1793 aaaaaaaaaaaaaaaaaaaaaaaaa 1817
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1801 aaaaaaaaaaaaaaaaaaaaaaaaa 1825
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1791 aaaaaaaaaaaaaaaaaaaaaaaaa 1815
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1802 aaaaaaaaaaaaaaaaaaaaaaaaa 1826
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1792 aaaaaaaaaaaaaaaaaaaaaaaaa 1816
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1804 aaaaaaaaaaaaaaaaaaaaaaaaa 1828
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1800 aaaaaaaaaaaaaaaaaaaaaaaaa 1824
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1797 aaaaaaaaaaaaaaaaaaaaaaaaa 1821
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1796 aaaaaaaaaaaaaaaaaaaaaaaaa 1820
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1805 aaaaaaaaaaaaaaaaaaaaaaaaa 1829
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1798 aaaaaaaaaaaaaaaaaaaaaaaaa 1822
|||||||||||||||||||||||||
Sbjct: 1044 aaaaaaaaaaaaaaaaaaaaaaaaa 1020
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 127,583
Number of Sequences: 29161
Number of extensions: 127583
Number of successful extensions: 17654
Number of sequences better than 10.0: 280
length of query: 1829
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1811
effective length of database: 43,533,334
effective search space: 78838867874
effective search space used: 78838867874
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)