BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.sd.6697.C3
         (117 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_030434.1|  proteaseI (pfpI)-like protein (YLS5) [Arab...    54   1e-06
ref|NP_850303.1|  proteaseI (pfpI)-like protein (YLS5) [Arab...    54   1e-06
ref|NP_191023.1|  DJ-1 family protein [Arabidopsis thaliana]...    43   0.002

>ref|NP_030434.1| proteaseI (pfpI)-like protein (YLS5) [Arabidopsis
           thaliana]|gi|20197441|gb|AAC79625.2| expressed protein
           [Arabidopsis thaliana]|gi|21536875|gb|AAM61207.1|
           unknown [Arabidopsis thaliana]
          Length = 389

 Score = 53.5 bits (127), Expect = 1e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -3

Query: 115 ATAVYDLEDGRQIPAEKRGHNFFV 44
           ATAVYDLEDGRQIPAEKRGHNFFV
Sbjct: 244 ATAVYDLEDGRQIPAEKRGHNFFV 267



>ref|NP_850303.1| proteaseI (pfpI)-like protein (YLS5) [Arabidopsis
           thaliana]|gi|25408625|pir||C84810 hypothetical protein
           At2g38860 [imported] - Arabidopsis
           thaliana|gi|13122288|dbj|BAB32885.1| proteaseI
           (pfpI)-like protein [Arabidopsis
           thaliana]|gi|15081759|gb|AAK82534.1| At2g38860/T7F6.3
           [Arabidopsis thaliana]|gi|19699347|gb|AAL91283.1|
           At2g38860/T7F6.3 [Arabidopsis thaliana]
          Length = 398

 Score = 53.5 bits (127), Expect = 1e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -3

Query: 115 ATAVYDLEDGRQIPAEKRGHNFFV 44
           ATAVYDLEDGRQIPAEKRGHNFFV
Sbjct: 253 ATAVYDLEDGRQIPAEKRGHNFFV 276



>ref|NP_191023.1| DJ-1 family protein [Arabidopsis thaliana]|gi|11358009|pir||T47619
           hypothetical protein T14E10.170 - Arabidopsis
           thaliana|gi|7258363|emb|CAB77580.1| putative protein
           [Arabidopsis thaliana]|gi|20466235|gb|AAM20435.1|
           putative protein [Arabidopsis
           thaliana]|gi|30725650|gb|AAP37847.1| At3g54600
           [Arabidopsis thaliana]
          Length = 399

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -3

Query: 115 ATAVYDLEDGRQIPAEKRGHNFFV 44
           AT V+DLEDGRQ+P EK GHNF+V
Sbjct: 254 ATIVHDLEDGRQLPTEKFGHNFYV 277



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 14
effective length of database: 603,178,746
effective search space used: 14476289904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)