BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Z18227.f
(108 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565786.1| chlorophyll A-B binding protein / LHCII ty... 50 4e-06
ref|NP_850231.1| chlorophyll A-B binding protein / LHCII ty... 50 4e-06
gb|AAP44089.1| chlorophyll a/b binding protein [Brassica ol... 45 1e-04
ref|NP_174286.1| chlorophyll A-B binding protein 2, chlorop... 45 1e-04
gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis... 43 4e-04
ref|NP_564339.1| chlorophyll A-B binding protein 2, chlorop... 43 4e-04
gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryant... 42 0.003
gb|AAL67432.1| chlorophyll a/b binding protein [Brassica ol... 42 0.004
sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chl... 42 0.004
gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryant... 40 0.011
>ref|NP_565786.1| chlorophyll A-B binding protein / LHCII type I (LHB1B2)
[Arabidopsis thaliana]|gi|2119846|pir||S23546
chlorophyll a/b-binding protein type I precursor Lhb1B2
- Arabidopsis thaliana|gi|16364|emb|CAA45790.1|
photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]|gi|3128230|gb|AAC26710.1|
photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]|gi|13926260|gb|AAK49602.1|
At2g34420/T31E10.24 [Arabidopsis
thaliana]|gi|14517452|gb|AAK62616.1|
At2g34420/T31E10.24 [Arabidopsis
thaliana]|gi|15027899|gb|AAK76480.1| putative
photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]|gi|16226426|gb|AAL16165.1|
At2g34420/T31E10.24 [Arabidopsis
thaliana]|gi|16930391|gb|AAL31882.1|
At2g34420/T31E10.24 [Arabidopsis
thaliana]|gi|16930467|gb|AAL31919.1|
At2g34420/T31E10.24 [Arabidopsis
thaliana]|gi|17473689|gb|AAL38301.1| photosystem II
type I chlorophyll a/b binding protein [Arabidopsis
thaliana]|gi|19310503|gb|AAL84985.1|
At2g34420/T31E10.24 [Arabidopsis
thaliana]|gi|19310521|gb|AAL84994.1|
At2g34420/T31E10.24 [Arabidopsis
thaliana]|gi|20148517|gb|AAM10149.1| photosystem II
type I chlorophyll a/b binding protein [Arabidopsis
thaliana]|gi|20197168|gb|AAM14954.1| photosystem II
type I chlorophyll a b binding protein [Arabidopsis
thaliana]|gi|23296426|gb|AAN13114.1| putative
photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 265
Score = 49.7 bits (117), Expect(2) = 4e-06
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 1 MASSTMALSSPAFAGKAVKLAASDVLG 81
MASSTMALSSPAFAGKAVK AASDVLG
Sbjct: 1 MASSTMALSSPAFAGKAVKPAASDVLG 27
Score = 21.9 bits (45), Expect(2) = 4e-06
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 80 GSGRVTMRK 106
GSGRVTMRK
Sbjct: 27 GSGRVTMRK 35
>ref|NP_850231.1| chlorophyll A-B binding protein / LHCII type I (LHB1B2)
[Arabidopsis thaliana]
Length = 251
Score = 49.7 bits (117), Expect(2) = 4e-06
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 1 MASSTMALSSPAFAGKAVKLAASDVLG 81
MASSTMALSSPAFAGKAVK AASDVLG
Sbjct: 1 MASSTMALSSPAFAGKAVKPAASDVLG 27
Score = 21.9 bits (45), Expect(2) = 4e-06
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 80 GSGRVTMRK 106
GSGRVTMRK
Sbjct: 27 GSGRVTMRK 35
>gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 44.7 bits (104), Expect(2) = 1e-04
Identities = 25/29 (86%), Positives = 27/29 (92%), Gaps = 2/29 (6%)
Frame = +1
Query: 1 MASSTMALSSPAFAGKAVKL--AASDVLG 81
MA+STMALSSPAFAGKAVKL AAS+VLG
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPAASEVLG 29
Score = 21.9 bits (45), Expect(2) = 1e-04
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 80 GSGRVTMRK 106
GSGRVTMRK
Sbjct: 29 GSGRVTMRK 37
>ref|NP_174286.1| chlorophyll A-B binding protein 2, chloroplast / LHCII type I
CAB-2 / CAB-140 (CAB2B) [Arabidopsis
thaliana]|gi|115783|sp|P04778|CB22_ARATH Chlorophyll
a-b binding protein 2, chloroplast precursor (LHCII
type I CAB-2) (CAB-140) (LHCP)|gi|25299019|pir||A86423
probable chlorophyll a/b-binding protein [imported] -
Arabidopsis thaliana|gi|16376|emb|CAA27543.1|
chlorophyll a/b binding protein (LHCP AB 140)
[Arabidopsis thaliana]|gi|9972353|gb|AAG10603.1|
Putative chlorophyll a/b-binding protein [Arabidopsis
thaliana]|gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23
[Arabidopsis thaliana]|gi|15293003|gb|AAK93612.1|
putative photosystem II type I chlorophyll a/b binding
protein [Arabidopsis
thaliana]|gi|16226883|gb|AAL16289.1| At1g29930/F1N18_23
[Arabidopsis thaliana]|gi|16648807|gb|AAL25594.1|
At1g29930/F1N18_23 [Arabidopsis
thaliana]|gi|20258873|gb|AAM14108.1| putative
chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 44.7 bits (104), Expect(2) = 1e-04
Identities = 25/29 (86%), Positives = 27/29 (92%), Gaps = 2/29 (6%)
Frame = +1
Query: 1 MASSTMALSSPAFAGKAVKL--AASDVLG 81
MA+STMALSSPAFAGKAVKL AAS+VLG
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPAASEVLG 29
Score = 21.9 bits (45), Expect(2) = 1e-04
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 80 GSGRVTMRK 106
GSGRVTMRK
Sbjct: 29 GSGRVTMRK 37
>gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis
thaliana]|gi|21387019|gb|AAM47913.1| chlorophyll
a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 42.7 bits (99), Expect(2) = 4e-04
Identities = 24/29 (82%), Positives = 26/29 (88%), Gaps = 2/29 (6%)
Frame = +1
Query: 1 MASSTMALSSPAFAGKAVKL--AASDVLG 81
MA+STMALSSPAFAGKAV L AAS+VLG
Sbjct: 1 MAASTMALSSPAFAGKAVNLSPAASEVLG 29
Score = 21.9 bits (45), Expect(2) = 4e-04
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 80 GSGRVTMRK 106
GSGRVTMRK
Sbjct: 29 GSGRVTMRK 37
>ref|NP_564339.1| chlorophyll A-B binding protein 2, chloroplast / LHCII type I
CAB-2 / CAB-140 (CAB2A) [Arabidopsis
thaliana]|gi|18397288|ref|NP_564340.1| chlorophyll A-B
binding protein 165/180, chloroplast / LHCII type I
CAB-165/180 [Arabidopsis
thaliana]|gi|115767|sp|P04777|CB21_ARATH Chlorophyll
a-b binding protein 165/180, chloroplast precursor
(LHCII type I CAB-165/180) (LHCP)|gi|81603|pir||A29280
chlorophyll a/b-binding protein ab165 - Arabidopsis
thaliana|gi|16368|emb|CAA27540.1| chlorophyll a/b
binding protein (LHCP AB 65) [Arabidopsis
thaliana]|gi|16372|emb|CAA27541.1| chlorophyll a/b
binding protein (LHCP AB 180) [Arabidopsis
thaliana]|gi|9972354|gb|AAG10604.1| chlorophyll
a/b-binding protein [Arabidopsis
thaliana]|gi|9972355|gb|AAG10605.1| chlorophyll
a/b-binding protein [Arabidopsis
thaliana]|gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80
[Arabidopsis thaliana]|gi|15809862|gb|AAL06859.1|
At1g29920/F1N18_80 [Arabidopsis
thaliana]|gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80
[Arabidopsis thaliana]|gi|17065476|gb|AAL32892.1|
chlorophyll a/b-binding protein [Arabidopsis
thaliana]|gi|20148487|gb|AAM10134.1| chlorophyll
a/b-binding protein [Arabidopsis
thaliana]|gi|21555860|gb|AAM63949.1| photosystem II
type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]|gi|22135932|gb|AAM91548.1|
photosystem II type I chlorophyll a/b binding protein,
putative [Arabidopsis
thaliana]|gi|23397170|gb|AAN31868.1| putative
photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
Length = 267
Score = 42.7 bits (99), Expect(2) = 4e-04
Identities = 24/29 (82%), Positives = 26/29 (88%), Gaps = 2/29 (6%)
Frame = +1
Query: 1 MASSTMALSSPAFAGKAVKL--AASDVLG 81
MA+STMALSSPAFAGKAV L AAS+VLG
Sbjct: 1 MAASTMALSSPAFAGKAVNLSPAASEVLG 29
Score = 21.9 bits (45), Expect(2) = 4e-04
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +2
Query: 80 GSGRVTMRK 106
GSGRVTMRK
Sbjct: 29 GSGRVTMRK 37
>gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 42.4 bits (98), Expect = 0.003
Identities = 23/30 (76%), Positives = 27/30 (89%), Gaps = 2/30 (6%)
Frame = +1
Query: 1 MASSTMALSSPAFAGKAVKLA--ASDVLGK 84
MASSTMALSSP+FAGKAVKL+ AS+ LG+
Sbjct: 1 MASSTMALSSPSFAGKAVKLSPTASETLGE 30
>gb|AAL67432.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 42.0 bits (97), Expect = 0.004
Identities = 23/29 (79%), Positives = 26/29 (89%), Gaps = 2/29 (6%)
Frame = +1
Query: 1 MASSTMALSSPAFAGKAVKLA--ASDVLG 81
MA+STMALSSPAFAGKAVKL+ AS+V G
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPGASEVFG 29
>sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chloroplast precursor (LHCII
type I CAB-1) (LHCP)|gi|282896|pir||S22511 chlorophyll
a/b-binding protein precursor - white
mustard|gi|21138|emb|CAA34459.1| unnamed protein
product [Sinapis alba]|gi|21140|emb|CAA33903.1|
chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 42.0 bits (97), Expect = 0.004
Identities = 23/29 (79%), Positives = 26/29 (89%), Gaps = 2/29 (6%)
Frame = +1
Query: 1 MASSTMALSSPAFAGKAVKLA--ASDVLG 81
MA+STMALSSPAFAGKAVKL+ AS+V G
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPGASEVFG 29
>gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 40.4 bits (93), Expect = 0.011
Identities = 22/30 (73%), Positives = 26/30 (86%), Gaps = 2/30 (6%)
Frame = +1
Query: 1 MASSTMALSSPAFAGKAVKLA--ASDVLGK 84
MASSTMALSSP+ AGK VKLA AS++LG+
Sbjct: 1 MASSTMALSSPSLAGKMVKLAPTASEILGE 30
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.311 0.122 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 11
effective length of database: 608,864,640
effective search space used: 14612751360
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)