BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU235568_RAFL14_22_N05.f
         (128 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||G84508  hypothetical protein At2g13580 [imported] - Ara...    57   1e-07
ref|NP_178140.1|  cytochrome c oxidase family protein [Arabi...    37   0.12 
gb|AAM64516.1|  cytochrome c oxidase subunit, putative [Arab...    37   0.12 
dbj|BAD09596.1|  unknown protein [Oryza sativa (japonica cul...    31   8.5  

>pir||G84508 hypothetical protein At2g13580 [imported] - Arabidopsis
           thaliana|gi|4558663|gb|AAD22681.1| unknown protein
           [Arabidopsis thaliana]
          Length = 165

 Score = 57.0 bits (136), Expect = 1e-07
 Identities = 24/26 (92%), Positives = 24/26 (92%)
 Frame = +2

Query: 47  FPEESRPLCGGEXFHRILNPSPPSGP 124
           FPEESRPLCG E FHRILNPSPPSGP
Sbjct: 134 FPEESRPLCGEESFHRILNPSPPSGP 159



>ref|NP_178140.1| cytochrome c oxidase family protein [Arabidopsis
           thaliana]|gi|25406645|pir||H96833 hypothetical protein
           F18B13.29 [imported] - Arabidopsis
           thaliana|gi|5902388|gb|AAD55490.1| Unknown protein
           [Arabidopsis thaliana]|gi|30102586|gb|AAP21211.1|
           At1g80230 [Arabidopsis thaliana]
          Length = 171

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +1

Query: 70  MWRRXVSSHLKSISAVGS 123
           MWRR VSSHLKSISAVGS
Sbjct: 1   MWRRIVSSHLKSISAVGS 18



>gb|AAM64516.1| cytochrome c oxidase subunit, putative [Arabidopsis thaliana]
          Length = 171

 Score = 37.0 bits (84), Expect = 0.12
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +1

Query: 70  MWRRXVSSHLKSISAVGS 123
           MWRR VSSHLKSISAVGS
Sbjct: 1   MWRRIVSSHLKSISAVGS 18



>dbj|BAD09596.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 901

 Score = 30.8 bits (68), Expect = 8.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 123 GPDGGDGFKMR*NXSPPHNGLDSSG---KLGLSFPISDDSQS 7
           G +GG G   + +   PH  +DSSG   K+G+  P   DS+S
Sbjct: 185 GSNGGGGAGGQVHDEMPHRNVDSSGKRRKIGMEIPYVSDSES 226



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 18
effective length of database: 595,597,554
effective search space used: 14294341296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)