BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.5022.C1
(1497 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g13360.1 68415.m01474 serine-glyoxylate aminotransferase... 2932 0.0
At2g13360.2 68415.m01475 serine-glyoxylate aminotransferase... 2859 0.0
At5g60460.1 68418.m07583 sec61beta family protein similar t... 40 0.053
At4g09770.1 68417.m01605 meprin and TRAF homology domain-co... 40 0.053
At3g01060.3 68416.m00009 expressed protein 40 0.053
>At2g13360.1 68415.m01474 serine-glyoxylate aminotransferase-related similar to
serine-glyoxylate aminotransferase
(GI:21535798)[Methylobacterium dichloromethanicum;
contains TIGRFAM TIGR01364: phosphoserine
aminotransferase; contains Pfam PF00266:
aminotransferase, class V]
Length = 1492
Score = 2932 bits (1479), Expect = 0.0
Identities = 1479/1479 (100%)
Strand = Plus / Plus
Query: 3 aaagaagaagatatattaaagaggtttgtgaagacgaaggagtccaaaacctccctcagg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagaagaagatatattaaagaggtttgtgaagacgaaggagtccaaaacctccctcagg 60
Query: 63 agcttccgccttattcagagtgtagaggaggatccaaaagaaaagaggaaaaaatggact 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agcttccgccttattcagagtgtagaggaggatccaaaagaaaagaggaaaaaatggact 120
Query: 123 atatgtatggaccagggagacaccatctgtttgtaccaggaccagtgaacataccggaac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atatgtatggaccagggagacaccatctgtttgtaccaggaccagtgaacataccggaac 180
Query: 183 cggtaatccgggcgatgaaccggaacaacgaggattaccggtcaccagccattccggcgc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cggtaatccgggcgatgaaccggaacaacgaggattaccggtcaccagccattccggcgc 240
Query: 243 ttacgaaaacattgttggaggatgttaagaagatattcaagaccacatcagggacacctt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttacgaaaacattgttggaggatgttaagaagatattcaagaccacatcagggacacctt 300
Query: 303 ttctgtttcccacgaccgggactggtgcttgggagagtgccttgaccaacacgttatctc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttctgtttcccacgaccgggactggtgcttgggagagtgccttgaccaacacgttatctc 360
Query: 363 ctggagacaggattgtttcgtttctgattggacaatttagcttgctctggattgaccagc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctggagacaggattgtttcgtttctgattggacaatttagcttgctctggattgaccagc 420
Query: 423 agaagaggcttaatttcaatgttgatgtggttgagagtgattggggacaaggtgctaatc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agaagaggcttaatttcaatgttgatgtggttgagagtgattggggacaaggtgctaatc 480
Query: 483 tccaagtcttggcctcaaagctctcacaagacgagaatcataccatcaaagccatttgca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tccaagtcttggcctcaaagctctcacaagacgagaatcataccatcaaagccatttgca 540
Query: 543 ttgtccacaacgagaccgcgaccggagttaccaatgacatctctgctgtccgcacactcc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgtccacaacgagaccgcgaccggagttaccaatgacatctctgctgtccgcacactcc 600
Query: 603 tcgatcactacaagcatccggctttgctgctagtggacggtgtttcgtccatctgcgcgc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcgatcactacaagcatccggctttgctgctagtggacggtgtttcgtccatctgcgcgc 660
Query: 663 ttgatttccgaatggatgagtggggagtggacgtggccttgactgggtctcagaaagcct 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttgatttccgaatggatgagtggggagtggacgtggccttgactgggtctcagaaagcct 720
Query: 723 tatctcttccaacaggacttggtattgtctgcgccagtcctaaagctttggaagctacca 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tatctcttccaacaggacttggtattgtctgcgccagtcctaaagctttggaagctacca 780
Query: 783 aaacttctaaatctctcaaagtattctttgactggaatgactaccttaagttttacaagc 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aaacttctaaatctctcaaagtattctttgactggaatgactaccttaagttttacaagc 840
Query: 843 taggaacctattggccatacacaccttccattcaacttctctacggtcttagagctgctc 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 taggaacctattggccatacacaccttccattcaacttctctacggtcttagagctgctc 900
Query: 903 ttgatcttatctttgaggaaggacttgagaacatcatcgcccgccatgctcgtttgggaa 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ttgatcttatctttgaggaaggacttgagaacatcatcgcccgccatgctcgtttgggaa 960
Query: 963 aggccaccaggcttgcggtggaagcatgggggctgaaaaactgcacacagaaggaggaat 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 aggccaccaggcttgcggtggaagcatgggggctgaaaaactgcacacagaaggaggaat 1020
Query: 1023 ggataagtaacacagtgacagcagttatggtgcctccgcatatagacggttcggagattg 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ggataagtaacacagtgacagcagttatggtgcctccgcatatagacggttcggagattg 1080
Query: 1083 tgagaagggcatggcagaggtacaacttaagtcttggtcttggtctcaacaaagtggctg 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tgagaagggcatggcagaggtacaacttaagtcttggtcttggtctcaacaaagtggctg 1140
Query: 1143 gaaaggttttcagaattggacacctaggaaatgtgaatgagttgcaacttctcgggtgtc 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gaaaggttttcagaattggacacctaggaaatgtgaatgagttgcaacttctcgggtgtc 1200
Query: 1203 ttgcgggagtggagatgatactgaaggatgttggatacccagttgtaatgggaagtggag 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ttgcgggagtggagatgatactgaaggatgttggatacccagttgtaatgggaagtggag 1260
Query: 1263 ttgcagctgcctctacttatcttcagcaccacattcctctcattccctctagaatctaat 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ttgcagctgcctctacttatcttcagcaccacattcctctcattccctctagaatctaat 1320
Query: 1323 ccatgtggtccttctctttctttctcttcctctcaatgtaaacaaactctcatgttttct 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 ccatgtggtccttctctttctttctcttcctctcaatgtaaacaaactctcatgttttct 1380
Query: 1383 cttttcttcatctatatttttactacattatctatgtttttatttgctatctccaacaaa 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 cttttcttcatctatatttttactacattatctatgtttttatttgctatctccaacaaa 1440
Query: 1443 cttattgaacaaaagatcaaatatgtttattactcacta 1481
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 cttattgaacaaaagatcaaatatgtttattactcacta 1479
>At2g13360.2 68415.m01475 serine-glyoxylate aminotransferase-related similar to
serine-glyoxylate aminotransferase
(GI:21535798)[Methylobacterium dichloromethanicum;
contains TIGRFAM TIGR01364: phosphoserine
aminotransferase; contains Pfam PF00266:
aminotransferase, class V]
Length = 1470
Score = 2859 bits (1442), Expect = 0.0
Identities = 1457/1462 (99%), Gaps = 5/1462 (0%)
Strand = Plus / Plus
Query: 20 aaagaggtttgtgaagacgaaggagtccaaaacctccctcaggagcttccgccttattca 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagaggtttgtgaagacgaaggagtccaaaacctccctcaggagcttccgccttattca 60
Query: 80 gagtgtagaggaggatccaaaagaaaagaggaaaaaatggactatatgtatggaccaggg 139
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gag-----aggaggatccaaaagaaaagaggaaaaaatggactatatgtatggaccaggg 115
Query: 140 agacaccatctgtttgtaccaggaccagtgaacataccggaaccggtaatccgggcgatg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 agacaccatctgtttgtaccaggaccagtgaacataccggaaccggtaatccgggcgatg 175
Query: 200 aaccggaacaacgaggattaccggtcaccagccattccggcgcttacgaaaacattgttg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 aaccggaacaacgaggattaccggtcaccagccattccggcgcttacgaaaacattgttg 235
Query: 260 gaggatgttaagaagatattcaagaccacatcagggacaccttttctgtttcccacgacc 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gaggatgttaagaagatattcaagaccacatcagggacaccttttctgtttcccacgacc 295
Query: 320 gggactggtgcttgggagagtgccttgaccaacacgttatctcctggagacaggattgtt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gggactggtgcttgggagagtgccttgaccaacacgttatctcctggagacaggattgtt 355
Query: 380 tcgtttctgattggacaatttagcttgctctggattgaccagcagaagaggcttaatttc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tcgtttctgattggacaatttagcttgctctggattgaccagcagaagaggcttaatttc 415
Query: 440 aatgttgatgtggttgagagtgattggggacaaggtgctaatctccaagtcttggcctca 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aatgttgatgtggttgagagtgattggggacaaggtgctaatctccaagtcttggcctca 475
Query: 500 aagctctcacaagacgagaatcataccatcaaagccatttgcattgtccacaacgagacc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aagctctcacaagacgagaatcataccatcaaagccatttgcattgtccacaacgagacc 535
Query: 560 gcgaccggagttaccaatgacatctctgctgtccgcacactcctcgatcactacaagcat 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gcgaccggagttaccaatgacatctctgctgtccgcacactcctcgatcactacaagcat 595
Query: 620 ccggctttgctgctagtggacggtgtttcgtccatctgcgcgcttgatttccgaatggat 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ccggctttgctgctagtggacggtgtttcgtccatctgcgcgcttgatttccgaatggat 655
Query: 680 gagtggggagtggacgtggccttgactgggtctcagaaagccttatctcttccaacagga 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gagtggggagtggacgtggccttgactgggtctcagaaagccttatctcttccaacagga 715
Query: 740 cttggtattgtctgcgccagtcctaaagctttggaagctaccaaaacttctaaatctctc 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cttggtattgtctgcgccagtcctaaagctttggaagctaccaaaacttctaaatctctc 775
Query: 800 aaagtattctttgactggaatgactaccttaagttttacaagctaggaacctattggcca 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 aaagtattctttgactggaatgactaccttaagttttacaagctaggaacctattggcca 835
Query: 860 tacacaccttccattcaacttctctacggtcttagagctgctcttgatcttatctttgag 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tacacaccttccattcaacttctctacggtcttagagctgctcttgatcttatctttgag 895
Query: 920 gaaggacttgagaacatcatcgcccgccatgctcgtttgggaaaggccaccaggcttgcg 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gaaggacttgagaacatcatcgcccgccatgctcgtttgggaaaggccaccaggcttgcg 955
Query: 980 gtggaagcatgggggctgaaaaactgcacacagaaggaggaatggataagtaacacagtg 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 gtggaagcatgggggctgaaaaactgcacacagaaggaggaatggataagtaacacagtg 1015
Query: 1040 acagcagttatggtgcctccgcatatagacggttcggagattgtgagaagggcatggcag 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 acagcagttatggtgcctccgcatatagacggttcggagattgtgagaagggcatggcag 1075
Query: 1100 aggtacaacttaagtcttggtcttggtctcaacaaagtggctggaaaggttttcagaatt 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 aggtacaacttaagtcttggtcttggtctcaacaaagtggctggaaaggttttcagaatt 1135
Query: 1160 ggacacctaggaaatgtgaatgagttgcaacttctcgggtgtcttgcgggagtggagatg 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 ggacacctaggaaatgtgaatgagttgcaacttctcgggtgtcttgcgggagtggagatg 1195
Query: 1220 atactgaaggatgttggatacccagttgtaatgggaagtggagttgcagctgcctctact 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 atactgaaggatgttggatacccagttgtaatgggaagtggagttgcagctgcctctact 1255
Query: 1280 tatcttcagcaccacattcctctcattccctctagaatctaatccatgtggtccttctct 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 tatcttcagcaccacattcctctcattccctctagaatctaatccatgtggtccttctct 1315
Query: 1340 ttctttctcttcctctcaatgtaaacaaactctcatgttttctcttttcttcatctatat 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 ttctttctcttcctctcaatgtaaacaaactctcatgttttctcttttcttcatctatat 1375
Query: 1400 ttttactacattatctatgtttttatttgctatctccaacaaacttattgaacaaaagat 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 ttttactacattatctatgtttttatttgctatctccaacaaacttattgaacaaaagat 1435
Query: 1460 caaatatgtttattactcacta 1481
||||||||||||||||||||||
Sbjct: 1436 caaatatgtttattactcacta 1457
>At5g60460.1 68418.m07583 sec61beta family protein similar to SP|P52870 Protein
transport protein SEC61 beta 1 subunit {Saccharomyces
cerevisiae}; contains Pfam profile PF03911: Sec61beta
family
Length = 499
Score = 40.1 bits (20), Expect = 0.053
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1478 actaaaaaaaaaaaaaaaaa 1497
||||||||||||||||||||
Sbjct: 406 actaaaaaaaaaaaaaaaaa 387
>At4g09770.1 68417.m01605 meprin and TRAF homology domain-containing protein /
MATH domain-containing protein low similarity to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1098
Score = 40.1 bits (20), Expect = 0.053
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1478 actaaaaaaaaaaaaaaaaa 1497
||||||||||||||||||||
Sbjct: 1047 actaaaaaaaaaaaaaaaaa 1028
Score = 34.2 bits (17), Expect = 3.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1481 aaaaaaaaaaaaaaaaa 1497
|||||||||||||||||
Sbjct: 1041 aaaaaaaaaaaaaaaaa 1025
Score = 34.2 bits (17), Expect = 3.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1481 aaaaaaaaaaaaaaaaa 1497
|||||||||||||||||
Sbjct: 1037 aaaaaaaaaaaaaaaaa 1021
Score = 34.2 bits (17), Expect = 3.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1481 aaaaaaaaaaaaaaaaa 1497
|||||||||||||||||
Sbjct: 1040 aaaaaaaaaaaaaaaaa 1024
Score = 34.2 bits (17), Expect = 3.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1481 aaaaaaaaaaaaaaaaa 1497
|||||||||||||||||
Sbjct: 1043 aaaaaaaaaaaaaaaaa 1027
Score = 34.2 bits (17), Expect = 3.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1481 aaaaaaaaaaaaaaaaa 1497
|||||||||||||||||
Sbjct: 1042 aaaaaaaaaaaaaaaaa 1026
Score = 34.2 bits (17), Expect = 3.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1481 aaaaaaaaaaaaaaaaa 1497
|||||||||||||||||
Sbjct: 1039 aaaaaaaaaaaaaaaaa 1023
Score = 34.2 bits (17), Expect = 3.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1481 aaaaaaaaaaaaaaaaa 1497
|||||||||||||||||
Sbjct: 1038 aaaaaaaaaaaaaaaaa 1022
Score = 34.2 bits (17), Expect = 3.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1481 aaaaaaaaaaaaaaaaa 1497
|||||||||||||||||
Sbjct: 1036 aaaaaaaaaaaaaaaaa 1020
>At3g01060.3 68416.m00009 expressed protein
Length = 1589
Score = 40.1 bits (20), Expect = 0.053
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1478 actaaaaaaaaaaaaaaaaa 1497
||||||||||||||||||||
Sbjct: 16 actaaaaaaaaaaaaaaaaa 35
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 67,871
Number of Sequences: 29161
Number of extensions: 67871
Number of successful extensions: 4291
Number of sequences better than 10.0: 229
length of query: 1497
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1479
effective length of database: 43,533,334
effective search space: 64385800986
effective search space used: 64385800986
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)