BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU235430_RAFL14_11_E06.f
         (219 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_173088.1|  cation/proton exchanger, putative (CHX1) [...    31   7.7  

>ref|NP_173088.1| cation/proton exchanger, putative (CHX1) [Arabidopsis
           thaliana]|gi|25518298|pir||A86299 hypothetical protein
           F3O9.18 - Arabidopsis thaliana|gi|4966359|gb|AAD34690.1|
           Similar to gi|4835769 T8K14.18 putative Na/H antiporter
           isolog from Arabidopsis thaliana BAC gb|AC007202
          Length = 785

 Score = 30.8 bits (68), Expect = 7.7
 Identities = 15/43 (34%), Positives = 22/43 (50%)
 Frame = +2

Query: 44  RFLEQRERRISILFVTNVIVFFRFHGGACIQTMAALLTSGPTD 172
           + L+Q +  I I    N+  F + HG   +Q +AAL   GP D
Sbjct: 581 KVLKQAQCSIGIFVDRNITGFHQLHGSDSVQHVAALFFGGPDD 623



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 48
effective length of database: 538,738,614
effective search space used: 12929726736
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)