BLAST Search Results

BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= CB261732.f
         (127 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178025.1|  photosystem II 10 kDa polypeptide [Arabido...    76   2e-13
sp|P49108|PSBR_BRACM  Photosystem II 10 kDa polypeptide, chl...    65   5e-10
gb|AAO32060.1|  photosystem II 10kDa polypeptide [Brassica r...    60   1e-08
gb|AAF78511.1|  polypeptide precursor of photosystem II [Pyr...    55   4e-07
sp|P06183|PSBR_SOLTU  Photosystem II 10 kDa polypeptide, chl...    44   0.001
sp|Q40163|PSBR_LYCES  Photosystem II 10 kDa polypeptide, chl...    44   0.001
sp|Q40519|PSBR_TOBAC  Photosystem II 10 kDa polypeptide, chl...    43   0.002
emb|CAA27989.1|  unnamed protein product [Solanum tuberosum]       42   0.004
gb|AAN60205.1|  photosystem II 10 kDa protein [Xerophyta hum...    40   0.014
sp|P10690|PSBR_SPIOL  Photosystem II 10 kDa polypeptide, chl...    39   0.031

>ref|NP_178025.1| photosystem II 10 kDa polypeptide [Arabidopsis
           thaliana]|gi|131398|sp|P27202|PSBR_ARATH Photosystem II
           10 kDa polypeptide, chloroplast
           precursor|gi|72714|pir||F2MU10 photosystem II 10K
           protein precursor - Arabidopsis
           thaliana|gi|16447|emb|CAA39441.1| photosystem II 10 kDa
           polypeptide [Arabidopsis
           thaliana]|gi|3152571|gb|AAC17052.1| Match to photosystem
           II 10kDa polypeptide gb|X55970.  ESTs gb|Z17693,
           gb|N37616, gb|T41858, gb|T88021, gb|R37531, gb|T04679,
           gb|N37520, gb|N64965, gb|Z17592 and gb|N65338, gb|N37466
           and gb|T45400 come from this gene. [Arabidopsis
           thaliana]|gi|17979203|gb|AAL49840.1| putative
           photosystem II polypeptide protein [Arabidopsis
           thaliana]|gi|20465469|gb|AAM20194.1| putative
           photosystem II polypeptide [Arabidopsis
           thaliana]|gi|21536748|gb|AAM61080.1| photosystem II
           polypeptide, putative [Arabidopsis thaliana]
          Length = 140

 Score = 76.3 bits (186), Expect = 2e-13
 Identities = 39/39 (100%), Positives = 39/39 (100%)
 Frame = +3

Query: 9   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKI 125
           MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKI
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKI 39



>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplast
           precursor|gi|967968|gb|AAA74957.1| photosystem II 10kDa
           polypeptide
          Length = 141

 Score = 64.7 bits (156), Expect = 5e-10
 Identities = 33/36 (91%), Positives = 34/36 (93%)
 Frame = +3

Query: 9   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPS 116
           MAASVMLSSVTLKPAGFTVEK +ARGLPSLTRA PS
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPS 36



>gb|AAO32060.1| photosystem II 10kDa polypeptide [Brassica rapa subsp. pekinensis]
          Length = 137

 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 31/36 (86%), Positives = 32/36 (88%)
 Frame = +3

Query: 18  SVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKI 125
           SVMLSSVTLKPAGFTVEK + RGLPSLTRA  SFKI
Sbjct: 1   SVMLSSVTLKPAGFTVEKMSVRGLPSLTRAPSSFKI 36



>gb|AAF78511.1| polypeptide precursor of photosystem II [Pyrus pyrifolia]
          Length = 82

 Score = 55.1 bits (131), Expect = 4e-07
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +3

Query: 9   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKI 125
           MAASVM SSV+LKP+ FTV+K A RGLPSL+R+  SFK+
Sbjct: 1   MAASVMTSSVSLKPSPFTVDKPAVRGLPSLSRSSASFKV 39



>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplast precursor (Light
           inducible tissue-specific ST-LS1
           protein)|gi|82277|pir||S00411 photosystem II 10K protein
           precursor - potato|gi|21489|emb|CAA28450.1| ST-LS1
           protein [Solanum tuberosum]
          Length = 138

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 21/37 (56%), Positives = 30/37 (80%)
 Frame = +3

Query: 15  ASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKI 125
           AS ++SS++LKP  FT+EKT+ +GLPSL R+  SFK+
Sbjct: 2   ASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSSFKV 37



>sp|Q40163|PSBR_LYCES Photosystem II 10 kDa polypeptide, chloroplast
           precursor|gi|1217642|emb|CAA65231.1| PSII polypeptide
           [Lycopersicon esculentum]
          Length = 138

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 21/37 (56%), Positives = 30/37 (80%)
 Frame = +3

Query: 15  ASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKI 125
           AS ++SS++LKP  FT+EK + +GLPSLTR+  SFK+
Sbjct: 2   ASTVMSSLSLKPT-FTLEKISVKGLPSLTRSSSSFKV 37



>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplast precursor
           (PII10)|gi|322764|pir||S32021 photosystem II 10K protein
           - common tobacco|gi|22669|emb|CAA49693.1| NtpII10
           [Nicotiana tabacum]
          Length = 136

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +3

Query: 9   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKI 125
           MA++VM    +LKPA F+VEKTA +GLPSL R+  SF++
Sbjct: 1   MASTVM----SLKPAPFSVEKTAVKGLPSLARSSSSFRV 35



>emb|CAA27989.1| unnamed protein product [Solanum tuberosum]
          Length = 138

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 20/37 (54%), Positives = 29/37 (78%)
 Frame = +3

Query: 15  ASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKI 125
           AS ++SS++LKP  FT+EKT+ +GLPSL R+   FK+
Sbjct: 2   ASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSPFKV 37



>gb|AAN60205.1| photosystem II 10 kDa protein [Xerophyta humilis]
          Length = 139

 Score = 40.0 bits (92), Expect = 0.014
 Identities = 21/39 (53%), Positives = 29/39 (73%)
 Frame = +3

Query: 9   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKI 125
           MAAS M+SS+ LKPA    E+++ +GLPSL R+  SFK+
Sbjct: 1   MAAS-MMSSLALKPATPVFERSSVKGLPSLVRSSSSFKV 38



>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplast
           precursor|gi|81471|pir||S00409 photosystem II 10K
           protein precursor - spinach|gi|170127|gb|AAA34037.1|
           10kd polypeptide precursor
          Length = 140

 Score = 38.9 bits (89), Expect = 0.031
 Identities = 22/40 (55%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
 Frame = +3

Query: 9   MAASVMLSSVTLKPAGFTVE-KTAARGLPSLTRARPSFKI 125
           MA SVM SS++LKP+ F V+ K+A +GLPSL+R+  SF +
Sbjct: 1   MATSVM-SSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTV 39



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 17
effective length of database: 597,492,852
effective search space used: 14339828448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results