BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV520784.r
(101 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177587.1| geranylgeranyl reductase [Arabidopsis thal... 65 4e-10
emb|CAA74372.1| geranylgeranyl reductase [Arabidopsis thali... 65 4e-10
gb|AAN31803.1| putative geranylgeranyl reductase [Arabidops... 65 4e-10
emb|CAA07683.1| geranylgeranyl reductase [Nicotiana tabacum] 60 1e-08
gb|AAP55675.1| geranylgeranyl reductase [Prunus persica] 59 4e-08
gb|AAD28640.2| geranylgeranyl hydrogenase [Glycine max] 58 7e-08
dbj|BAD15541.1| putative geranylgeranyl reductase [Oryza sa... 56 3e-07
gb|AAN77241.1| geranyl-geranyl reductase [Xerophyta humilis] 55 3e-07
pir||T12299 geranylgeranyl hydrogenase (EC 1.3.1.-) - commo... 50 2e-05
gb|AAC12646.1| geranylgeranyl reductase [Zantedeschia aethi... 48 5e-05
>ref|NP_177587.1| geranylgeranyl reductase [Arabidopsis
thaliana]|gi|25326665|pir||F96773 geranylgeranyl
reductase, 47568-49165 [imported] - Arabidopsis
thaliana|gi|12324810|gb|AAG52372.1| geranylgeranyl
reductase; 47568-49165 [Arabidopsis
thaliana]|gi|15292919|gb|AAK92830.1| putative
geranylgeranyl reductase [Arabidopsis
thaliana]|gi|15450455|gb|AAK96521.1| At1g74470/F1M20_15
[Arabidopsis thaliana]|gi|16648981|gb|AAL24342.1|
geranylgeranyl reductase [Arabidopsis
thaliana]|gi|18700167|gb|AAL77695.1| At1g74470/F1M20_15
[Arabidopsis thaliana]|gi|20259041|gb|AAM14236.1|
putative geranylgeranyl reductase [Arabidopsis
thaliana]|gi|20857316|gb|AAM26711.1| At1g74470/F1M20_15
[Arabidopsis thaliana]|gi|23397186|gb|AAN31876.1|
putative geranylgeranyl reductase [Arabidopsis
thaliana]|gi|27311931|gb|AAO00931.1| geranylgeranyl
reductase [Arabidopsis thaliana]
Length = 467
Score = 65.1 bits (157), Expect = 4e-10
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV
Sbjct: 435 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467
>emb|CAA74372.1| geranylgeranyl reductase [Arabidopsis thaliana]
Length = 472
Score = 65.1 bits (157), Expect = 4e-10
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV
Sbjct: 440 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 472
>gb|AAN31803.1| putative geranylgeranyl reductase [Arabidopsis thaliana]
Length = 467
Score = 65.1 bits (157), Expect = 4e-10
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV
Sbjct: 435 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467
>emb|CAA07683.1| geranylgeranyl reductase [Nicotiana tabacum]
Length = 464
Score = 60.1 bits (144), Expect = 1e-08
Identities = 28/33 (84%), Positives = 33/33 (99%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PG+P+ED+KLAVNTIGSLVRANALRRE++KLSV
Sbjct: 432 PGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464
>gb|AAP55675.1| geranylgeranyl reductase [Prunus persica]
Length = 466
Score = 58.5 bits (140), Expect = 4e-08
Identities = 28/33 (84%), Positives = 32/33 (96%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PG+P ED+KLAVNTIGSLVRANALRRE+EKL+V
Sbjct: 434 PGNPWEDLKLAVNTIGSLVRANALRREMEKLNV 466
>gb|AAD28640.2| geranylgeranyl hydrogenase [Glycine max]
Length = 462
Score = 57.8 bits (138), Expect = 7e-08
Identities = 26/33 (78%), Positives = 32/33 (96%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PG+PLED+KLA+NTIGSLVRANA+RRE+ KL+V
Sbjct: 430 PGNPLEDLKLAINTIGSLVRANAIRREMNKLNV 462
>dbj|BAD15541.1| putative geranylgeranyl reductase [Oryza sativa (japonica
cultivar-group)]|gi|46390642|dbj|BAD16125.1| putative
geranylgeranyl reductase [Oryza sativa (japonica
cultivar-group)]
Length = 463
Score = 55.8 bits (133), Expect = 3e-07
Identities = 26/33 (78%), Positives = 32/33 (96%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PG+PL+DIKLAVNTIGSLVRA ALRRE+EK+++
Sbjct: 431 PGNPLDDIKLAVNTIGSLVRATALRREMEKVTL 463
>gb|AAN77241.1| geranyl-geranyl reductase [Xerophyta humilis]
Length = 202
Score = 55.5 bits (132), Expect = 3e-07
Identities = 23/33 (69%), Positives = 33/33 (99%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PG+P++D+KLAVNTIGSL+RANALRRE++K+++
Sbjct: 170 PGNPIDDLKLAVNTIGSLIRANALRREMQKITL 202
>pir||T12299 geranylgeranyl hydrogenase (EC 1.3.1.-) - common ice
plant|gi|3202030|gb|AAC19396.1| geranylgeranyl
hydrogenase [Mesembryanthemum crystallinum]
Length = 466
Score = 49.7 bits (117), Expect = 2e-05
Identities = 22/31 (70%), Positives = 28/31 (89%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKL 9
PG+PL+D+KLAV T+GSLVRA LRRE+EK+
Sbjct: 434 PGNPLDDLKLAVRTVGSLVRAYGLRREMEKI 464
>gb|AAC12646.1| geranylgeranyl reductase [Zantedeschia aethiopica]
Length = 291
Score = 48.1 bits (113), Expect = 5e-05
Identities = 22/29 (75%), Positives = 26/29 (88%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIE 15
PGSPLED+KLAV TIGSL+RANALR ++
Sbjct: 252 PGSPLEDLKLAVKTIGSLIRANALRNYMD 280
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 9
effective length of database: 612,655,236
effective search space used: 14703725664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)