BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= R87038.x
         (207 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_172153.1|  photosystem II oxygen-evolving complex 23 ...    26   4.3  

>ref|NP_172153.1| photosystem II oxygen-evolving complex 23 (OEC23) [Arabidopsis
           thaliana]|gi|18206371|sp|Q42029|PSP1_ARATH
           Oxygen-evolving enhancer protein 2-1, chloroplast
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane protein)|gi|7443217|pir||JC5271
           oxygen-evolving complex 23K protein - Arabidopsis
           thaliana|gi|1769905|emb|CAA66785.1| 23 kDa polypeptide
           of oxygen-evolving comlex (OEC) [Arabidopsis
           thaliana]|gi|6692695|gb|AAF24829.1| F12K11.3
           [Arabidopsis thaliana]|gi|15912277|gb|AAL08272.1|
           At1g06680/F4H5_18 [Arabidopsis
           thaliana]|gi|17979237|gb|AAL49935.1| At1g06680/F4H5_18
           [Arabidopsis thaliana]|gi|18377710|gb|AAL67005.1|
           putative 23 kDa polypeptide of oxygen-evolving comlex
           protein [Arabidopsis
           thaliana]|gi|20465405|gb|AAM20127.1| putative 23 kDa
           polypeptide of oxygen-evolving complex (OEC)
           [Arabidopsis thaliana]|gi|21592906|gb|AAM64856.1| 23 kDa
           polypeptide of oxygen-evolving comlex (OEC) [Arabidopsis
           thaliana]
          Length = 263

 Score = 26.2 bits (56), Expect(2) = 4.3
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +3

Query: 150 KAXQSNEXVXSAVSRRLAL 206
           KA QS+E   SAVSRRLAL
Sbjct: 41  KAQQSHEDDNSAVSRRLAL 59




 Score = 24.3 bits (51), Expect(2) = 4.3
 Identities = 11/40 (27%), Positives = 11/40 (27%)
 Frame = +2

Query: 29  MAYSACFXXXXXXXXXXXXXXXXXXXXXXXXXXXPVQXXC 148
           MAYSACF                           PVQ  C
Sbjct: 1   MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIIC 40



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 44
effective length of database: 546,319,806
effective search space used: 13111675344
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)