BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= R87050.x
(113 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||RKMUA1 ribulose-bisphosphate carboxylase (EC 4.1.1.39)... 79 4e-14
emb|CAA48415.1| unnamed protein product [synthetic construct] 79 4e-14
gb|AAG40356.1| At1g67090 [Arabidopsis thaliana] 79 4e-14
ref|NP_176880.1| ribulose bisphosphate carboxylase small ch... 79 4e-14
ref|NP_974098.1| ribulose bisphosphate carboxylase small ch... 79 4e-14
ref|NP_198659.1| ribulose bisphosphate carboxylase small ch... 75 4e-13
ref|NP_198658.1| ribulose bisphosphate carboxylase small ch... 75 4e-13
pir||RKMUB2 ribulose-bisphosphate carboxylase (EC 4.1.1.39)... 75 4e-13
sp|P00865|RBS1_SOYBN Ribulose bisphosphate carboxylase smal... 74 7e-13
sp|P12468|RBS4_SOYBN Ribulose bisphosphate carboxylase smal... 74 9e-13
>pir||RKMUA1 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain A1
precursor - Arabidopsis thaliana
Length = 180
Score = 78.6 bits (192), Expect = 4e-14
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +2
Query: 2 NNDITSITXNGGRVNCMQVWPPIGKKKFXTLSYLPDL 112
NNDITSIT NGGRVNCMQVWPPIGKKKF TLSYLPDL
Sbjct: 40 NNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDL 76
>emb|CAA48415.1| unnamed protein product [synthetic construct]
Length = 89
Score = 78.6 bits (192), Expect = 4e-14
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +2
Query: 2 NNDITSITXNGGRVNCMQVWPPIGKKKFXTLSYLPDL 112
NNDITSIT NGGRVNCMQVWPPIGKKKF TLSYLPDL
Sbjct: 40 NNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDL 76
>gb|AAG40356.1| At1g67090 [Arabidopsis thaliana]
Length = 180
Score = 78.6 bits (192), Expect = 4e-14
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +2
Query: 2 NNDITSITXNGGRVNCMQVWPPIGKKKFXTLSYLPDL 112
NNDITSIT NGGRVNCMQVWPPIGKKKF TLSYLPDL
Sbjct: 40 NNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDL 76
>ref|NP_176880.1| ribulose bisphosphate carboxylase small chain 1A / RuBisCO small
subunit 1A (RBCS-1A) (ATS1A) [Arabidopsis
thaliana]|gi|27735223|sp|P10795|RBS1_ARATH Ribulose
bisphosphate carboxylase small chain 1A, chloroplast
precursor (RuBisCO small subunit
1A)|gi|25291028|pir||G96694 hypothetical protein F5A8.1
[imported] - Arabidopsis
thaliana|gi|4204274|gb|AAD10655.1| ribulose bisphosphate
carboxylase, small subunit [Arabidopsis
thaliana]|gi|11762170|gb|AAG40363.1| 000C10C11
[Arabidopsis thaliana]|gi|15294200|gb|AAK95277.1|
F1O19.10/F1O19.10 [Arabidopsis
thaliana]|gi|15451002|gb|AAK96772.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|15809842|gb|AAL06849.1| At1g67090/F1O19.10
[Arabidopsis thaliana]|gi|16604426|gb|AAL24219.1|
At1g67090/F1O19.10 [Arabidopsis
thaliana]|gi|16649141|gb|AAL24422.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|17065072|gb|AAL32690.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|17065270|gb|AAL32789.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|17473628|gb|AAL38277.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|20260064|gb|AAM13379.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|20260080|gb|AAM13387.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|20453287|gb|AAM19882.1| At1g67090/F1O19.10
[Arabidopsis thaliana]|gi|23198308|gb|AAN15681.1|
ribulose bisphosphate carboxylase, small subunit
[Arabidopsis thaliana]|gi|25083492|gb|AAN72087.1|
ribulose bisphosphate carboxylase, small subunit
[Arabidopsis thaliana]
Length = 180
Score = 78.6 bits (192), Expect = 4e-14
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +2
Query: 2 NNDITSITXNGGRVNCMQVWPPIGKKKFXTLSYLPDL 112
NNDITSIT NGGRVNCMQVWPPIGKKKF TLSYLPDL
Sbjct: 40 NNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDL 76
>ref|NP_974098.1| ribulose bisphosphate carboxylase small chain 1A / RuBisCO small
subunit 1A (RBCS-1A) (ATS1A) [Arabidopsis thaliana]
Length = 136
Score = 78.6 bits (192), Expect = 4e-14
Identities = 35/37 (94%), Positives = 35/37 (94%)
Frame = +2
Query: 2 NNDITSITXNGGRVNCMQVWPPIGKKKFXTLSYLPDL 112
NNDITSIT NGGRVNCMQVWPPIGKKKF TLSYLPDL
Sbjct: 40 NNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDL 76
>ref|NP_198659.1| ribulose bisphosphate carboxylase small chain 1B / RuBisCO small
subunit 1B (RBCS-1B) (ATS1B) [Arabidopsis
thaliana]|gi|132090|sp|P10796|RBS2_ARATH Ribulose
bisphosphate carboxylase small chain 1B, chloroplast
precursor (RuBisCO small subunit
1B)|gi|68062|pir||RKMUB1 ribulose-bisphosphate
carboxylase (EC 4.1.1.39) small chain B1 precursor -
Arabidopsis thaliana|gi|16193|emb|CAA32700.1| ribulose
bisphosphate carboxylase [Arabidopsis
thaliana]|gi|9758821|dbj|BAB09355.1| ribulose
bisphosphate carboxylase small chain 1b precursor
(RuBisCO small subunit 1b) [Arabidopsis
thaliana]|gi|15294184|gb|AAK95269.1| F1O19.10/F1O19.10
[Arabidopsis thaliana]|gi|23505787|gb|AAN28753.1|
At5g38430/F1O19.10 [Arabidopsis thaliana]
Length = 181
Score = 75.1 bits (183), Expect = 4e-13
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +2
Query: 2 NNDITSITXNGGRVNCMQVWPPIGKKKFXTLSYLPDL 112
NNDITSIT NGGRV+CM+VWPPIGKKKF TLSYLPDL
Sbjct: 40 NNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDL 76
>ref|NP_198658.1| ribulose bisphosphate carboxylase small chain 2B / RuBisCO small
subunit 2B (RBCS-2B) (ATS2B) [Arabidopsis
thaliana]|gi|27735224|sp|P10797|RBS3_ARATH Ribulose
bisphosphate carboxylase small chain 2B, chloroplast
precursor (RuBisCO small subunit
2B)|gi|9758820|dbj|BAB09354.1| ribulose bisphosphate
carboxylase small chain 2b precursor (RuBisCO small
subunit 2b) [Arabidopsis
thaliana]|gi|16649139|gb|AAL24421.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|17064722|gb|AAL32515.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|17064764|gb|AAL32536.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|17064934|gb|AAL32621.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|20259880|gb|AAM13287.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|25083689|gb|AAN72105.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|27311897|gb|AAO00914.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|28058980|gb|AAO29974.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis thaliana]
Length = 181
Score = 75.1 bits (183), Expect = 4e-13
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +2
Query: 2 NNDITSITXNGGRVNCMQVWPPIGKKKFXTLSYLPDL 112
NNDITSIT NGGRV+CM+VWPPIGKKKF TLSYLPDL
Sbjct: 40 NNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDL 76
>pir||RKMUB2 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain B2
precursor - Arabidopsis
thaliana|gi|16194|emb|CAA32701.1| ribulose bisphosphate
carboxylase [Arabidopsis thaliana]
Length = 181
Score = 75.1 bits (183), Expect = 4e-13
Identities = 33/37 (89%), Positives = 35/37 (94%)
Frame = +2
Query: 2 NNDITSITXNGGRVNCMQVWPPIGKKKFXTLSYLPDL 112
NNDITSIT NGGRV+CM+VWPPIGKKKF TLSYLPDL
Sbjct: 40 NNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDL 76
>sp|P00865|RBS1_SOYBN Ribulose bisphosphate carboxylase small chain 1, chloroplast
precursor (RuBisCO small subunit 1)|gi|68053|pir||RKSYS
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
chain precursor SRS1 - soybean|gi|18742|emb|CAA23736.1|
rubpcase [Glycine max]
Length = 178
Score = 74.3 bits (181), Expect = 7e-13
Identities = 33/37 (89%), Positives = 33/37 (89%)
Frame = +2
Query: 2 NNDITSITXNGGRVNCMQVWPPIGKKKFXTLSYLPDL 112
NNDITSI NGGRV CMQVWPPIGKKKF TLSYLPDL
Sbjct: 40 NNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDL 76
>sp|P12468|RBS4_SOYBN Ribulose bisphosphate carboxylase small chain 4, chloroplast
precursor (RuBisCO small subunit 4)|gi|68054|pir||RKSYS4
ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
chain precursor SRS4 - soybean|gi|170058|gb|AAA34008.1|
ribulose 1,5-bisphosphate
carboxylase|gi|225579|prf||1306410A ribulose
bisphosphate carboxylase S
Length = 178
Score = 73.9 bits (180), Expect = 9e-13
Identities = 32/37 (86%), Positives = 33/37 (88%)
Frame = +2
Query: 2 NNDITSITXNGGRVNCMQVWPPIGKKKFXTLSYLPDL 112
NNDITSI NGGRV CMQVWPP+GKKKF TLSYLPDL
Sbjct: 40 NNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDL 76
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 13
effective length of database: 605,074,044
effective search space used: 14521777056
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)