BLAST Search Results

BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV536513.f
         (126 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||RKMUA1  ribulose-bisphosphate carboxylase (EC 4.1.1.39)...    80   9e-15
emb|CAA48415.1|  unnamed protein product [synthetic construct]     80   9e-15
gb|AAG40356.1|  At1g67090 [Arabidopsis thaliana]                   80   9e-15
emb|CAA31948.1|  ribulose bisphosphate carboxylase [Arabidop...    80   9e-15
ref|NP_176880.1|  ribulose bisphosphate carboxylase small ch...    80   9e-15
ref|NP_974098.1|  ribulose bisphosphate carboxylase small ch...    80   9e-15
sp|P27985|RBS2_BRANA  Ribulose bisphosphate carboxylase smal...    72   4e-12
sp|P05346|RBS1_BRANA  Ribulose bisphosphate carboxylase smal...    70   1e-11
ref|NP_198659.1|  ribulose bisphosphate carboxylase small ch...    70   1e-11
pir||RKRPS  ribulose-bisphosphate carboxylase (EC 4.1.1.39) ...    69   3e-11

>pir||RKMUA1 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain A1
           precursor - Arabidopsis thaliana
          Length = 180

 Score = 80.5 bits (197), Expect = 9e-15
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +3

Query: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 125
           SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI
Sbjct: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 43



>emb|CAA48415.1| unnamed protein product [synthetic construct]
          Length = 89

 Score = 80.5 bits (197), Expect = 9e-15
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +3

Query: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 125
           SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI
Sbjct: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 43



>gb|AAG40356.1| At1g67090 [Arabidopsis thaliana]
          Length = 180

 Score = 80.5 bits (197), Expect = 9e-15
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +3

Query: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 125
           SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI
Sbjct: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 43



>emb|CAA31948.1| ribulose bisphosphate carboxylase [Arabidopsis thaliana]
          Length = 182

 Score = 80.5 bits (197), Expect = 9e-15
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +3

Query: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 125
           SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI
Sbjct: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 43



>ref|NP_176880.1| ribulose bisphosphate carboxylase small chain 1A / RuBisCO small
           subunit 1A (RBCS-1A) (ATS1A) [Arabidopsis
           thaliana]|gi|27735223|sp|P10795|RBS1_ARATH Ribulose
           bisphosphate carboxylase small chain 1A, chloroplast
           precursor (RuBisCO small subunit
           1A)|gi|25291028|pir||G96694 hypothetical protein F5A8.1
           [imported] - Arabidopsis
           thaliana|gi|4204274|gb|AAD10655.1| ribulose bisphosphate
           carboxylase, small subunit [Arabidopsis
           thaliana]|gi|11762170|gb|AAG40363.1| 000C10C11
           [Arabidopsis thaliana]|gi|15294200|gb|AAK95277.1|
           F1O19.10/F1O19.10 [Arabidopsis
           thaliana]|gi|15451002|gb|AAK96772.1| ribulose
           bisphosphate carboxylase, small subunit [Arabidopsis
           thaliana]|gi|15809842|gb|AAL06849.1| At1g67090/F1O19.10
           [Arabidopsis thaliana]|gi|16604426|gb|AAL24219.1|
           At1g67090/F1O19.10 [Arabidopsis
           thaliana]|gi|16649141|gb|AAL24422.1| ribulose
           bisphosphate carboxylase, small subunit [Arabidopsis
           thaliana]|gi|17065072|gb|AAL32690.1| ribulose
           bisphosphate carboxylase, small subunit [Arabidopsis
           thaliana]|gi|17065270|gb|AAL32789.1| ribulose
           bisphosphate carboxylase, small subunit [Arabidopsis
           thaliana]|gi|17473628|gb|AAL38277.1| ribulose
           bisphosphate carboxylase, small subunit [Arabidopsis
           thaliana]|gi|20260064|gb|AAM13379.1| ribulose
           bisphosphate carboxylase, small subunit [Arabidopsis
           thaliana]|gi|20260080|gb|AAM13387.1| ribulose
           bisphosphate carboxylase, small subunit [Arabidopsis
           thaliana]|gi|20453287|gb|AAM19882.1| At1g67090/F1O19.10
           [Arabidopsis thaliana]|gi|23198308|gb|AAN15681.1|
           ribulose bisphosphate carboxylase, small subunit
           [Arabidopsis thaliana]|gi|25083492|gb|AAN72087.1|
           ribulose bisphosphate carboxylase, small subunit
           [Arabidopsis thaliana]
          Length = 180

 Score = 80.5 bits (197), Expect = 9e-15
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +3

Query: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 125
           SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI
Sbjct: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 43



>ref|NP_974098.1| ribulose bisphosphate carboxylase small chain 1A / RuBisCO small
           subunit 1A (RBCS-1A) (ATS1A) [Arabidopsis thaliana]
          Length = 136

 Score = 80.5 bits (197), Expect = 9e-15
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +3

Query: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 125
           SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI
Sbjct: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 43



>sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small chain F1, chloroplast
           precursor (RuBisCO small subunit
           F1)|gi|68065|pir||RKRPF1 ribulose-bisphosphate
           carboxylase (EC 4.1.1.39) small chain precursor (gene
           rbcSF1) - rape|gi|17852|emb|CAA39402.1| ribulose
           bisphosphate carboxylase /oxygenase small subunit
           [Brassica napus]
          Length = 181

 Score = 71.6 bits (174), Expect = 4e-12
 Identities = 36/41 (87%), Positives = 37/41 (89%)
 Frame = +3

Query: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 125
           SSMLSSA +V SPAQATMVAPF GLKSSAAFP TRKANNDI
Sbjct: 3   SSMLSSAAVVTSPAQATMVAPFTGLKSSAAFPVTRKANNDI 43



>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain, chloroplast
           precursor (RuBisCO small subunit)|gi|486998|pir||S37292
           ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
           chain precursor - rape|gi|17850|emb|CAA43410.1| ribulose
           bisphosphate carboxylase [Brassica napus]
          Length = 181

 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 35/41 (85%), Positives = 37/41 (89%)
 Frame = +3

Query: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 125
           SSMLSSA +V SPAQATMVAPF GLKSS+AFP TRKANNDI
Sbjct: 3   SSMLSSAAVVTSPAQATMVAPFTGLKSSSAFPVTRKANNDI 43



>ref|NP_198659.1| ribulose bisphosphate carboxylase small chain 1B / RuBisCO small
           subunit 1B (RBCS-1B) (ATS1B) [Arabidopsis
           thaliana]|gi|132090|sp|P10796|RBS2_ARATH Ribulose
           bisphosphate carboxylase small chain 1B, chloroplast
           precursor (RuBisCO small subunit
           1B)|gi|68062|pir||RKMUB1 ribulose-bisphosphate
           carboxylase (EC 4.1.1.39) small chain B1 precursor -
           Arabidopsis thaliana|gi|16193|emb|CAA32700.1| ribulose
           bisphosphate carboxylase [Arabidopsis
           thaliana]|gi|9758821|dbj|BAB09355.1| ribulose
           bisphosphate carboxylase small chain 1b precursor
           (RuBisCO small subunit 1b) [Arabidopsis
           thaliana]|gi|15294184|gb|AAK95269.1| F1O19.10/F1O19.10
           [Arabidopsis thaliana]|gi|23505787|gb|AAN28753.1|
           At5g38430/F1O19.10 [Arabidopsis thaliana]
          Length = 181

 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 35/41 (85%), Positives = 37/41 (89%)
 Frame = +3

Query: 3   SSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 125
           SSMLSSA +V SPAQATMVAPF GLKSSA+FP TRKANNDI
Sbjct: 3   SSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDI 43



>pir||RKRPS ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
           precursor - rape|gi|17855|emb|CAA30290.1| rubisco ssu
           precursor [Brassica napus]
          Length = 181

 Score = 68.9 bits (167), Expect = 3e-11
 Identities = 34/40 (85%), Positives = 36/40 (90%)
 Frame = +3

Query: 6   SMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDI 125
           SMLSSA +V SPAQATMVAPF GLKSS+AFP TRKANNDI
Sbjct: 4   SMLSSAAVVTSPAQATMVAPFTGLKSSSAFPVTRKANNDI 43



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.303    0.107    0.255 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 17
effective length of database: 597,492,852
effective search space used: 14339828448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)







BLAST Search Results