BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV525740.f
(119 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP44089.1| chlorophyll a/b binding protein [Brassica ol... 55 6e-07
ref|NP_174286.1| chlorophyll A-B binding protein 2, chlorop... 55 6e-07
gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis... 53 2e-06
ref|NP_564339.1| chlorophyll A-B binding protein 2, chlorop... 53 2e-06
gb|AAL67432.1| chlorophyll a/b binding protein [Brassica ol... 50 1e-05
sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chl... 50 1e-05
gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryant... 48 5e-05
ref|NP_565787.1| chlorophyll A-B binding protein / LHCII ty... 48 5e-05
gb|AAM64379.1| putative photosystem II type I chlorophyll a... 48 5e-05
gb|AAG40044.2| At2g34430 [Arabidopsis thaliana] 48 5e-05
>gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 54.7 bits (130), Expect = 6e-07
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPAFAGKA KLSPAASEVLGS
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPAASEVLGS 30
>ref|NP_174286.1| chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2
/ CAB-140 (CAB2B) [Arabidopsis
thaliana]|gi|115783|sp|P04778|CB22_ARATH Chlorophyll a-b
binding protein 2, chloroplast precursor (LHCII type I
CAB-2) (CAB-140) (LHCP)|gi|25299019|pir||A86423 probable
chlorophyll a/b-binding protein [imported] - Arabidopsis
thaliana|gi|16376|emb|CAA27543.1| chlorophyll a/b
binding protein (LHCP AB 140) [Arabidopsis
thaliana]|gi|9972353|gb|AAG10603.1| Putative chlorophyll
a/b-binding protein [Arabidopsis
thaliana]|gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23
[Arabidopsis thaliana]|gi|15293003|gb|AAK93612.1|
putative photosystem II type I chlorophyll a/b binding
protein [Arabidopsis
thaliana]|gi|16226883|gb|AAL16289.1| At1g29930/F1N18_23
[Arabidopsis thaliana]|gi|16648807|gb|AAL25594.1|
At1g29930/F1N18_23 [Arabidopsis
thaliana]|gi|20258873|gb|AAM14108.1| putative
chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 54.7 bits (130), Expect = 6e-07
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPAFAGKA KLSPAASEVLGS
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPAASEVLGS 30
>gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis
thaliana]|gi|21387019|gb|AAM47913.1| chlorophyll
a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 52.8 bits (125), Expect = 2e-06
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPAFAGKA LSPAASEVLGS
Sbjct: 1 MAASTMALSSPAFAGKAVNLSPAASEVLGS 30
>ref|NP_564339.1| chlorophyll A-B binding protein 2, chloroplast / LHCII type I CAB-2
/ CAB-140 (CAB2A) [Arabidopsis
thaliana]|gi|18397288|ref|NP_564340.1| chlorophyll A-B
binding protein 165/180, chloroplast / LHCII type I
CAB-165/180 [Arabidopsis
thaliana]|gi|115767|sp|P04777|CB21_ARATH Chlorophyll a-b
binding protein 165/180, chloroplast precursor (LHCII
type I CAB-165/180) (LHCP)|gi|81603|pir||A29280
chlorophyll a/b-binding protein ab165 - Arabidopsis
thaliana|gi|16368|emb|CAA27540.1| chlorophyll a/b
binding protein (LHCP AB 65) [Arabidopsis
thaliana]|gi|16372|emb|CAA27541.1| chlorophyll a/b
binding protein (LHCP AB 180) [Arabidopsis
thaliana]|gi|9972354|gb|AAG10604.1| chlorophyll
a/b-binding protein [Arabidopsis
thaliana]|gi|9972355|gb|AAG10605.1| chlorophyll
a/b-binding protein [Arabidopsis
thaliana]|gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80
[Arabidopsis thaliana]|gi|15809862|gb|AAL06859.1|
At1g29920/F1N18_80 [Arabidopsis
thaliana]|gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80
[Arabidopsis thaliana]|gi|17065476|gb|AAL32892.1|
chlorophyll a/b-binding protein [Arabidopsis
thaliana]|gi|20148487|gb|AAM10134.1| chlorophyll
a/b-binding protein [Arabidopsis
thaliana]|gi|21555860|gb|AAM63949.1| photosystem II type
I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]|gi|22135932|gb|AAM91548.1|
photosystem II type I chlorophyll a/b binding protein,
putative [Arabidopsis
thaliana]|gi|23397170|gb|AAN31868.1| putative
photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
Length = 267
Score = 52.8 bits (125), Expect = 2e-06
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPAFAGKA LSPAASEVLGS
Sbjct: 1 MAASTMALSSPAFAGKAVNLSPAASEVLGS 30
>gb|AAL67432.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 50.4 bits (119), Expect = 1e-05
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPAFAGKA KLSP ASEV G+
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPGASEVFGT 30
>sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chloroplast precursor (LHCII
type I CAB-1) (LHCP)|gi|282896|pir||S22511 chlorophyll
a/b-binding protein precursor - white
mustard|gi|21138|emb|CAA34459.1| unnamed protein product
[Sinapis alba]|gi|21140|emb|CAA33903.1| chlorophyll
a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 50.4 bits (119), Expect = 1e-05
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPAFAGKA KLSP ASEV G+
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPGASEVFGT 30
>gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 48.1 bits (113), Expect = 5e-05
Identities = 24/29 (82%), Positives = 25/29 (85%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLG 114
MA STMALSSP+FAGKA KLSP ASE LG
Sbjct: 1 MASSTMALSSPSFAGKAVKLSPTASETLG 29
>ref|NP_565787.1| chlorophyll A-B binding protein / LHCII type I (LHB1B1)
[Arabidopsis thaliana]|gi|2119848|pir||S25677
chlorophyll a/b-binding protein type I precursor Lhb1B1
- Arabidopsis thaliana|gi|16366|emb|CAA45789.1|
photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]|gi|3128229|gb|AAC26709.1|
putative photosystem II type I chlorophyll a/b binding
protein. [Arabidopsis
thaliana]|gi|11908034|gb|AAG41446.1| putative
photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]|gi|12642854|gb|AAK00369.1|
putative photosystem II type I chlorophyll a/b binding
protein [Arabidopsis
thaliana]|gi|20197164|gb|AAM14951.1| putative
photosystem II type I chlorophyll a b binding protein.
[Arabidopsis thaliana]|gi|21539563|gb|AAM53334.1|
putative photosystem II type I chlorophyll a/b binding
protein. [Arabidopsis
thaliana]|gi|25083751|gb|AAN72114.1| putative
photosystem II type I chlorophyll a/b binding protein.
[Arabidopsis thaliana]
Length = 266
Score = 48.1 bits (113), Expect = 5e-05
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPA GKA KLSPAASEV G+
Sbjct: 1 MAASTMALSSPALTGKAVKLSPAASEVFGT 30
>gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein.
[Arabidopsis thaliana]
Length = 266
Score = 48.1 bits (113), Expect = 5e-05
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPA GKA KLSPAASEV G+
Sbjct: 1 MAASTMALSSPALTGKAVKLSPAASEVFGT 30
>gb|AAG40044.2| At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 48.1 bits (113), Expect = 5e-05
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPA GKA KLSPAASEV G+
Sbjct: 1 MAASTMALSSPALTGKAVKLSPAASEVFGT 30
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.313 0.120 0.314
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 15
effective length of database: 601,283,448
effective search space used: 14430802752
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)