BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.222.C1
(1630 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g03880.1 68414.m00372 12S seed storage protein (CRB) ide... 3225 0.0
At5g44120.3 68418.m05400 12S seed storage protein (CRA1) ne... 101 2e-20
At5g44120.2 68418.m05399 12S seed storage protein (CRA1) ne... 101 2e-20
At5g44120.1 68418.m05398 12S seed storage protein (CRA1) ne... 100 7e-20
At4g28520.3 68417.m04081 12S seed storage protein, putative... 52 2e-05
>At1g03880.1 68414.m00372 12S seed storage protein (CRB) identical to 12S seed
storage protein, gi|808937 [SP|P15456] [Plant Mol Biol
11:805-820 (1988)]; contains Pfam profile PF00190 Cupin
and Prosite 11-S plant seed storage proteins signature
PS00305
Length = 1628
Score = 3225 bits (1627), Expect = 0.0
Identities = 1627/1627 (100%)
Strand = Plus / Plus
Query: 3 aagaaagtaaatcaataaagaggaagaaaaatgggtcgagtctcatctattatctctttc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaaagtaaatcaataaagaggaagaaaaatgggtcgagtctcatctattatctctttc 60
Query: 63 tctttgacactcttgatcctcttcaatggctacactgcccaacagtggcccaacgagtgc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctttgacactcttgatcctcttcaatggctacactgcccaacagtggcccaacgagtgc 120
Query: 123 cagctcgatcaactcaatgcgctcgaaccatcccaaatcatcaagagcgagggtggtcgc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagctcgatcaactcaatgcgctcgaaccatcccaaatcatcaagagcgagggtggtcgc 180
Query: 183 atcgaggtctgggaccaccatgcaccccagctccgttgctccggctttgcctttgagcgt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atcgaggtctgggaccaccatgcaccccagctccgttgctccggctttgcctttgagcgt 240
Query: 243 ttcgtcattgagcctcagggtcttttcttgcccactttcttgaacgccggcaaactcacg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcgtcattgagcctcagggtcttttcttgcccactttcttgaacgccggcaaactcacg 300
Query: 303 tttgttgttcacggaaggggtctaatgggaagagttattccgggatgcgccgagacgttc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttgttgttcacggaaggggtctaatgggaagagttattccgggatgcgccgagacgttc 360
Query: 363 atggagtcaccggtatttggagaaggtcaaggtcagggtcagagtcaagggttccgtgac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atggagtcaccggtatttggagaaggtcaaggtcagggtcagagtcaagggttccgtgac 420
Query: 423 atgcaccagaaagtagagcacctacggtgcggtgacaccattgcaacaccatctggtgta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgcaccagaaagtagagcacctacggtgcggtgacaccattgcaacaccatctggtgta 480
Query: 483 gctcaatggttctacaacaatggaaatgagcctctcattcttgttgcagccgcggatctc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctcaatggttctacaacaatggaaatgagcctctcattcttgttgcagccgcggatctc 540
Query: 543 gccagcaaccagaaccagcttgaccgcaaccttagaccatttttgatagccggaaacaac 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gccagcaaccagaaccagcttgaccgcaaccttagaccatttttgatagccggaaacaac 600
Query: 603 ccacaagggcaggaatggctacaaggccgaaagcaacagaagcaaaacaacatcttcaat 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ccacaagggcaggaatggctacaaggccgaaagcaacagaagcaaaacaacatcttcaat 660
Query: 663 ggcttcgcacctgagatcttggctcaagccttcaagatcaatgtcgagacggctcagcag 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggcttcgcacctgagatcttggctcaagccttcaagatcaatgtcgagacggctcagcag 720
Query: 723 ctccagaaccagcaagataaccgtggcaacatcgtcaaggtcaacggacctttcggcgtc 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ctccagaaccagcaagataaccgtggcaacatcgtcaaggtcaacggacctttcggcgtc 780
Query: 783 attaggccacccttgagacgcggcgaaggcggccaacaaccacatgaaatagctaatggt 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 attaggccacccttgagacgcggcgaaggcggccaacaaccacatgaaatagctaatggt 840
Query: 843 ttagaggagactttgtgcaccatgcgatgcactgaaaacctcgatgacccgtcggatgct 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttagaggagactttgtgcaccatgcgatgcactgaaaacctcgatgacccgtcggatgct 900
Query: 903 gacgtgtacaagccatcactcggatacattagcacacttaacagctacaatcttcctatc 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gacgtgtacaagccatcactcggatacattagcacacttaacagctacaatcttcctatc 960
Query: 963 ctcagacttctccgccttagcgctcttcgtggctccatccgtaaaaacgctatggtgcta 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ctcagacttctccgccttagcgctcttcgtggctccatccgtaaaaacgctatggtgcta 1020
Query: 1023 ccgcaatggaacgtaaacgcaaacgcggcactctacgtgacaaacggaaaggctcatata 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ccgcaatggaacgtaaacgcaaacgcggcactctacgtgacaaacggaaaggctcatata 1080
Query: 1083 caaatggtgaacgacaacggagaaagagtgttcgaccaagagatctccagcggacagtta 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 caaatggtgaacgacaacggagaaagagtgttcgaccaagagatctccagcggacagtta 1140
Query: 1143 ctagtcgtgccacaaggcttttcggtcatgaaacatgccataggcgaacagttcgagtgg 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 ctagtcgtgccacaaggcttttcggtcatgaaacatgccataggcgaacagttcgagtgg 1200
Query: 1203 atcgaattcaagacaaacgaaaacgcacaggtcaacacactcgcgggccgtacctcagtc 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 atcgaattcaagacaaacgaaaacgcacaggtcaacacactcgcgggccgtacctcagtc 1260
Query: 1263 atgagaggtttgccgcttgaggttataaccaatgggtaccagatctctcccgaagaagct 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 atgagaggtttgccgcttgaggttataaccaatgggtaccagatctctcccgaagaagct 1320
Query: 1323 aaacgagtaaagtttagcacgattgagaccacactgacccatagcagtccaatgagctac 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aaacgagtaaagtttagcacgattgagaccacactgacccatagcagtccaatgagctac 1380
Query: 1383 ggaaggcctagggcttgaggcttgatgagcgcgtggtggaatagcgtttgaatctaaagt 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ggaaggcctagggcttgaggcttgatgagcgcgtggtggaatagcgtttgaatctaaagt 1440
Query: 1443 tcggtttggtacgacttgtaatatgaaataataatgtacaaagaagttctacgcttaagg 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 tcggtttggtacgacttgtaatatgaaataataatgtacaaagaagttctacgcttaagg 1500
Query: 1503 gaactgttttgttttgagctttgtattaggacgtctagtgtacaacaacgaacgtcgtgt 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 gaactgttttgttttgagctttgtattaggacgtctagtgtacaacaacgaacgtcgtgt 1560
Query: 1563 ataagcgatcgttgactctgcacatgtaactctttcctgaataaaaaatctttaagtctt 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 ataagcgatcgttgactctgcacatgtaactctttcctgaataaaaaatctttaagtctt 1620
Query: 1623 taatttc 1629
|||||||
Sbjct: 1621 taatttc 1627
>At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly identical to
SP|P15455 [Plant Mol Biol 11:805-820 (1988)]; contains
Pfam profile PF00190 Cupin and Prosite 11-S plant seed
storage proteins signature PS00305
Length = 1644
Score = 101 bits (51), Expect = 2e-20
Identities = 210/263 (79%)
Strand = Plus / Plus
Query: 537 gatctcgccagcaaccagaaccagcttgaccgcaaccttagaccatttttgatagccgga 596
||||| ||||| |||||||||||||||||||||||| || ||||||| ||||||||
Sbjct: 555 gatctagccagtcaccagaaccagcttgaccgcaacccaaggccattttacttagccgga 614
Query: 597 aacaacccacaagggcaggaatggctacaaggccgaaagcaacagaagcaaaacaacatc 656
|||||||||||||| || | |||||||||||| ||| |||||||| || || |||||
Sbjct: 615 aacaacccacaaggtcaagtatggctacaaggacgagagcaacagccacagaagaacatt 674
Query: 657 ttcaatggcttcgcacctgagatcttggctcaagccttcaagatcaatgtcgagacggct 716
|||||||| || | ||| ||| | | |||||||| || |||||| || | |||| ||
Sbjct: 675 ttcaatggatttggacccgaggttattgctcaagctttgaagatcgatcttcagacagca 734
Query: 717 cagcagctccagaaccagcaagataaccgtggcaacatcgtcaaggtcaacggacctttc 776
||||| || |||||||| | || |||||||| ||||| ||| ||| | ||||| |||
Sbjct: 735 cagcaacttcagaaccaagatgacaaccgtggaaacattgtccgagtccaaggaccgttc 794
Query: 777 ggcgtcattaggccacccttgag 799
|| ||||||||||| || |||||
Sbjct: 795 ggtgtcattaggccgcctttgag 817
Score = 99.6 bits (50), Expect = 7e-20
Identities = 95/110 (86%)
Strand = Plus / Plus
Query: 114 aacgagtgccagctcgatcaactcaatgcgctcgaaccatcccaaatcatcaagagcgag 173
||||||||||||||||| || |||||||||||||| || || || | | |||||||||
Sbjct: 129 aacgagtgccagctcgaccagctcaatgcgctcgagccgtcacacgtactgaagagcgag 188
Query: 174 ggtggtcgcatcgaggtctgggaccaccatgcaccccagctccgttgctc 223
| ||||||||||||||| ||||||||||| || || ||||||||||||||
Sbjct: 189 gctggtcgcatcgaggtgtgggaccaccacgctcctcagctccgttgctc 238
Score = 83.8 bits (42), Expect = 4e-15
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 391 aaggtcagggtcagagtcaagggttccgtgacatgcaccagaaagtagagcacctacggt 450
||||||| ||||| || || ||||||||||||||||||||||||| |||||| | ||
Sbjct: 409 aaggtcaaggtcaaagccagaggttccgtgacatgcaccagaaagtggagcacattagga 468
Query: 451 gcggtgacaccattgcaacaccatctggtgtagctcaatggttctacaac 500
||||||| |||||||| ||| || | |||||||| || ||||||||||||
Sbjct: 469 gcggtgataccattgccacaacacccggtgtagcacagtggttctacaac 518
Score = 81.8 bits (41), Expect = 2e-14
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 1209 ttcaagacaaacgaaaacgcacaggtcaacacactcgcgggccgtacctcagtcatgaga 1268
||||| ||||||| ||||| || ||||||| || ||||| || ||||||||| |||||
Sbjct: 1245 ttcaaaacaaacgctaacgcgcaaatcaacactctggcgggacgaacctcagtcttgaga 1304
Query: 1269 ggtttgccgcttgaggttataaccaatgggtaccagatctctcccgaagaagc 1321
||||| || ||||| || ||||||||||||| ||| ||||| |||||||||||
Sbjct: 1305 ggtttaccacttgaagtcataaccaatgggttccaaatctcacccgaagaagc 1357
Score = 61.9 bits (31), Expect = 2e-08
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 870 tgcactgaaaacctcgatgacccgtcggatgctgacgtgtacaagccatcactcggatac 929
||||| || ||||||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct: 906 tgcaccgataacctcgatgacccgtctcgtgctgacgtgtacaagccacagctcggttac 965
Query: 930 attagcacacttaacagctacaatcttcctatcct 964
|| ||||| || ||||| ||| |||| || |||||
Sbjct: 966 atcagcactctcaacagttacgatctccccatcct 1000
>At5g44120.2 68418.m05399 12S seed storage protein (CRA1) nearly identical to
SP|P15455 [Plant Mol Biol 11:805-820 (1988)]; contains
Pfam profile PF00190 Cupin and Prosite 11-S plant seed
storage proteins signature PS00305
Length = 1642
Score = 101 bits (51), Expect = 2e-20
Identities = 210/263 (79%)
Strand = Plus / Plus
Query: 537 gatctcgccagcaaccagaaccagcttgaccgcaaccttagaccatttttgatagccgga 596
||||| ||||| |||||||||||||||||||||||| || ||||||| ||||||||
Sbjct: 553 gatctagccagtcaccagaaccagcttgaccgcaacccaaggccattttacttagccgga 612
Query: 597 aacaacccacaagggcaggaatggctacaaggccgaaagcaacagaagcaaaacaacatc 656
|||||||||||||| || | |||||||||||| ||| |||||||| || || |||||
Sbjct: 613 aacaacccacaaggtcaagtatggctacaaggacgagagcaacagccacagaagaacatt 672
Query: 657 ttcaatggcttcgcacctgagatcttggctcaagccttcaagatcaatgtcgagacggct 716
|||||||| || | ||| ||| | | |||||||| || |||||| || | |||| ||
Sbjct: 673 ttcaatggatttggacccgaggttattgctcaagctttgaagatcgatcttcagacagca 732
Query: 717 cagcagctccagaaccagcaagataaccgtggcaacatcgtcaaggtcaacggacctttc 776
||||| || |||||||| | || |||||||| ||||| ||| ||| | ||||| |||
Sbjct: 733 cagcaacttcagaaccaagatgacaaccgtggaaacattgtccgagtccaaggaccgttc 792
Query: 777 ggcgtcattaggccacccttgag 799
|| ||||||||||| || |||||
Sbjct: 793 ggtgtcattaggccgcctttgag 815
Score = 99.6 bits (50), Expect = 7e-20
Identities = 95/110 (86%)
Strand = Plus / Plus
Query: 114 aacgagtgccagctcgatcaactcaatgcgctcgaaccatcccaaatcatcaagagcgag 173
||||||||||||||||| || |||||||||||||| || || || | | |||||||||
Sbjct: 129 aacgagtgccagctcgaccagctcaatgcgctcgagccgtcacacgtactgaagagcgag 188
Query: 174 ggtggtcgcatcgaggtctgggaccaccatgcaccccagctccgttgctc 223
| ||||||||||||||| ||||||||||| || || ||||||||||||||
Sbjct: 189 gctggtcgcatcgaggtgtgggaccaccacgctcctcagctccgttgctc 238
Score = 83.8 bits (42), Expect = 4e-15
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 391 aaggtcagggtcagagtcaagggttccgtgacatgcaccagaaagtagagcacctacggt 450
||||||| ||||| || || ||||||||||||||||||||||||| |||||| | ||
Sbjct: 407 aaggtcaaggtcaaagccagaggttccgtgacatgcaccagaaagtggagcacattagga 466
Query: 451 gcggtgacaccattgcaacaccatctggtgtagctcaatggttctacaac 500
||||||| |||||||| ||| || | |||||||| || ||||||||||||
Sbjct: 467 gcggtgataccattgccacaacacccggtgtagcacagtggttctacaac 516
Score = 81.8 bits (41), Expect = 2e-14
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 1209 ttcaagacaaacgaaaacgcacaggtcaacacactcgcgggccgtacctcagtcatgaga 1268
||||| ||||||| ||||| || ||||||| || ||||| || ||||||||| |||||
Sbjct: 1243 ttcaaaacaaacgctaacgcgcaaatcaacactctggcgggacgaacctcagtcttgaga 1302
Query: 1269 ggtttgccgcttgaggttataaccaatgggtaccagatctctcccgaagaagc 1321
||||| || ||||| || ||||||||||||| ||| ||||| |||||||||||
Sbjct: 1303 ggtttaccacttgaagtcataaccaatgggttccaaatctcacccgaagaagc 1355
Score = 61.9 bits (31), Expect = 2e-08
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 870 tgcactgaaaacctcgatgacccgtcggatgctgacgtgtacaagccatcactcggatac 929
||||| || ||||||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct: 904 tgcaccgataacctcgatgacccgtctcgtgctgacgtgtacaagccacagctcggttac 963
Query: 930 attagcacacttaacagctacaatcttcctatcct 964
|| ||||| || ||||| ||| |||| || |||||
Sbjct: 964 atcagcactctcaacagttacgatctccccatcct 998
>At5g44120.1 68418.m05398 12S seed storage protein (CRA1) nearly identical to
SP|P15455 [Plant Mol Biol 11:805-820 (1988)]; contains
Pfam profile PF00190 Cupin and Prosite 11-S plant seed
storage proteins signature PS00305
Length = 1774
Score = 99.6 bits (50), Expect = 7e-20
Identities = 95/110 (86%)
Strand = Plus / Plus
Query: 114 aacgagtgccagctcgatcaactcaatgcgctcgaaccatcccaaatcatcaagagcgag 173
||||||||||||||||| || |||||||||||||| || || || | | |||||||||
Sbjct: 129 aacgagtgccagctcgaccagctcaatgcgctcgagccgtcacacgtactgaagagcgag 188
Query: 174 ggtggtcgcatcgaggtctgggaccaccatgcaccccagctccgttgctc 223
| ||||||||||||||| ||||||||||| || || ||||||||||||||
Sbjct: 189 gctggtcgcatcgaggtgtgggaccaccacgctcctcagctccgttgctc 238
Score = 83.8 bits (42), Expect = 4e-15
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 391 aaggtcagggtcagagtcaagggttccgtgacatgcaccagaaagtagagcacctacggt 450
||||||| ||||| || || ||||||||||||||||||||||||| |||||| | ||
Sbjct: 409 aaggtcaaggtcaaagccagaggttccgtgacatgcaccagaaagtggagcacattagga 468
Query: 451 gcggtgacaccattgcaacaccatctggtgtagctcaatggttctacaac 500
||||||| |||||||| ||| || | |||||||| || ||||||||||||
Sbjct: 469 gcggtgataccattgccacaacacccggtgtagcacagtggttctacaac 518
Score = 81.8 bits (41), Expect = 2e-14
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 1209 ttcaagacaaacgaaaacgcacaggtcaacacactcgcgggccgtacctcagtcatgaga 1268
||||| ||||||| ||||| || ||||||| || ||||| || ||||||||| |||||
Sbjct: 1375 ttcaaaacaaacgctaacgcgcaaatcaacactctggcgggacgaacctcagtcttgaga 1434
Query: 1269 ggtttgccgcttgaggttataaccaatgggtaccagatctctcccgaagaagc 1321
||||| || ||||| || ||||||||||||| ||| ||||| |||||||||||
Sbjct: 1435 ggtttaccacttgaagtcataaccaatgggttccaaatctcacccgaagaagc 1487
Score = 69.9 bits (35), Expect = 6e-11
Identities = 167/211 (79%)
Strand = Plus / Plus
Query: 589 tagccggaaacaacccacaagggcaggaatggctacaaggccgaaagcaacagaagcaaa 648
|||||||||||||||||||||| || | |||||||||||| ||| |||||||| || |
Sbjct: 737 tagccggaaacaacccacaaggtcaagtatggctacaaggacgagagcaacagccacaga 796
Query: 649 acaacatcttcaatggcttcgcacctgagatcttggctcaagccttcaagatcaatgtcg 708
| ||||| |||||||| || | ||| ||| | | |||||||| || |||||| || |
Sbjct: 797 agaacattttcaatggatttggacccgaggttattgctcaagctttgaagatcgatcttc 856
Query: 709 agacggctcagcagctccagaaccagcaagataaccgtggcaacatcgtcaaggtcaacg 768
|||| || ||||| || |||||||| | || |||||||| ||||| ||| ||| | |
Sbjct: 857 agacagcacagcaacttcagaaccaagatgacaaccgtggaaacattgtccgagtccaag 916
Query: 769 gacctttcggcgtcattaggccacccttgag 799
|||| ||||| ||||||||||| || |||||
Sbjct: 917 gaccgttcggtgtcattaggccgcctttgag 947
Score = 61.9 bits (31), Expect = 2e-08
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 870 tgcactgaaaacctcgatgacccgtcggatgctgacgtgtacaagccatcactcggatac 929
||||| || ||||||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct: 1036 tgcaccgataacctcgatgacccgtctcgtgctgacgtgtacaagccacagctcggttac 1095
Query: 930 attagcacacttaacagctacaatcttcctatcct 964
|| ||||| || ||||| ||| |||| || |||||
Sbjct: 1096 atcagcactctcaacagttacgatctccccatcct 1130
Score = 50.1 bits (25), Expect = 6e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 537 gatctcgccagcaaccagaaccagcttgaccgcaacc 573
||||| ||||| ||||||||||||||||||||||||
Sbjct: 555 gatctagccagtcaccagaaccagcttgaccgcaacc 591
>At4g28520.3 68417.m04081 12S seed storage protein, putative / cruciferin,
putative strong similarity to SP|P33525 Cruciferin CRU1
precursor (11S globulin) (12S storage protein) from
Brassica napus; contains Pfam profile PF00190 Cupin and
Prosite 11-S plant seed storage proteins signature
PS00305 isoform contains non-consensus AC acceptor
splice site at intron 3
Length = 1570
Score = 52.0 bits (26), Expect = 2e-05
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 408 caagggttccgtgacatgcaccagaa 433
||||||||||||||||||||||||||
Sbjct: 588 caagggttccgtgacatgcaccagaa 613
Score = 38.2 bits (19), Expect = 0.23
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1301 ccagatctctcccgaagaagcta 1323
||||||||||||||| |||||||
Sbjct: 1277 ccagatctctcccgaggaagcta 1299
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,666
Number of Sequences: 29161
Number of extensions: 42666
Number of successful extensions: 1022
Number of sequences better than 10.0: 24
length of query: 1630
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1612
effective length of database: 43,533,334
effective search space: 70175734408
effective search space used: 70175734408
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)