BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.sd.18080.C1
         (1643 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67630.1  68418.m08527 DNA helicase, putative similar to ...  3255   0.0  
At3g49830.1  68416.m05448 DNA helicase-related similar to DN...   702   0.0  
At3g10985.1  68416.m01326 wound-responsive protein-related s...    40   0.058
At1g50440.2  68414.m05654 zinc finger (C3HC4-type RING finge...    40   0.058
At1g50440.1  68414.m05653 zinc finger (C3HC4-type RING finge...    40   0.058
>At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-like DNA helicase
            reptin [Danio rerio] GI:27733814, reptin [Drosophila
            melanogaster] GI:7243682
          Length = 1652

 Score = 3255 bits (1642), Expect = 0.0
 Identities = 1642/1642 (100%)
 Strand = Plus / Plus

                                                                        
Query: 2    agcttttctctaaaccctaaaaccttaactttttgctcttctccctccgcctcaatcgca 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11   agcttttctctaaaccctaaaaccttaactttttgctcttctccctccgcctcaatcgca 70

                                                                        
Query: 62   cgaagacgataatcgaatatggcggaactaaagctatcagagagtcgggacttaaccaga 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71   cgaagacgataatcgaatatggcggaactaaagctatcagagagtcgggacttaaccaga 130

                                                                        
Query: 122  gtcgagcgaatcggcgcacactcacacatcagaggactaggtctcgactctgccctcgag 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131  gtcgagcgaatcggcgcacactcacacatcagaggactaggtctcgactctgccctcgag 190

                                                                        
Query: 182  ccgcgagctgtttccgaaggtatggtcggtcaagtgaaggcgcgtaaagccgccggtgta 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191  ccgcgagctgtttccgaaggtatggtcggtcaagtgaaggcgcgtaaagccgccggtgta 250

                                                                        
Query: 242  atccttcagatgattagagaagggaaaatcgcgggtcgggctattctaatagcgggtcaa 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251  atccttcagatgattagagaagggaaaatcgcgggtcgggctattctaatagcgggtcaa 310

                                                                        
Query: 302  cccggaacgggtaagacagcgattgcaatgggtatggcgaaatctcttggcttggaaact 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311  cccggaacgggtaagacagcgattgcaatgggtatggcgaaatctcttggcttggaaact 370

                                                                        
Query: 362  ccttttgcgatgattgcaggaagtgaaattttctcattagagatgtcaaagacagaagct 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371  ccttttgcgatgattgcaggaagtgaaattttctcattagagatgtcaaagacagaagct 430

                                                                        
Query: 422  ttgactcagtcttttcgtaaagcgattggtgttaggatcaaagaagagacagaggttatt 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431  ttgactcagtcttttcgtaaagcgattggtgttaggatcaaagaagagacagaggttatt 490

                                                                        
Query: 482  gaaggagaagttgttgaggttcagattgataggcctgcttcttctggtgttgcttccaag 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491  gaaggagaagttgttgaggttcagattgataggcctgcttcttctggtgttgcttccaag 550

                                                                        
Query: 542  tcagggaagatgactatgaaaacgactgatatggaaactgtgtatgatatgggagctaag 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551  tcagggaagatgactatgaaaacgactgatatggaaactgtgtatgatatgggagctaag 610

                                                                        
Query: 602  atgattgaggctttgaacaaggagaaagtgcagagtggtgatgttattgccattgataaa 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611  atgattgaggctttgaacaaggagaaagtgcagagtggtgatgttattgccattgataaa 670

                                                                        
Query: 662  gctactgggaagattactaagcttggaagatcgttttcgaggtctcgtgattatgatgct 721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671  gctactgggaagattactaagcttggaagatcgttttcgaggtctcgtgattatgatgct 730

                                                                        
Query: 722  atgggtgcgcagaccaagtttgtgcagtgccctgaaggtgagttgcagaagaggaaagag 781
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731  atgggtgcgcagaccaagtttgtgcagtgccctgaaggtgagttgcagaagaggaaagag 790

                                                                        
Query: 782  gttgtacattgtgtcactcttcacgagattgatgttatcaacagcaggacacaagggttt 841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  gttgtacattgtgtcactcttcacgagattgatgttatcaacagcaggacacaagggttt 850

                                                                        
Query: 842  cttgcccttttcactggcgatactggagaaatccgatcagaagtccgggaacaaattgat 901
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  cttgcccttttcactggcgatactggagaaatccgatcagaagtccgggaacaaattgat 910

                                                                        
Query: 902  acaaaagtagctgaatggagagaagaaggaaaagcagagatagttcccggagttctcttc 961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  acaaaagtagctgaatggagagaagaaggaaaagcagagatagttcccggagttctcttc 970

                                                                        
Query: 962  attgatgaagtccacatgctcgacatcgaatgcttctcattccttaaccgagctctagaa 1021
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  attgatgaagtccacatgctcgacatcgaatgcttctcattccttaaccgagctctagaa 1030

                                                                        
Query: 1022 aacgaaatgtcaccaatccttgtggtggcaacaaaccgaggagtgacgacaatccgtggc 1081
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 aacgaaatgtcaccaatccttgtggtggcaacaaaccgaggagtgacgacaatccgtggc 1090

                                                                        
Query: 1082 acaaaccagaaatcaccacacgggatcccgattgatctccttgaccgtcttctcatcatc 1141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 acaaaccagaaatcaccacacgggatcccgattgatctccttgaccgtcttctcatcatc 1150

                                                                        
Query: 1142 actacccaaccttacacagacgatgacataaggaagatattagaaatccgttgccaagag 1201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 actacccaaccttacacagacgatgacataaggaagatattagaaatccgttgccaagag 1210

                                                                        
Query: 1202 gaagacgttgagatgaacgaagaggccaaacagcttttgacattgatcggacgtgataca 1261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 gaagacgttgagatgaacgaagaggccaaacagcttttgacattgatcggacgtgataca 1270

                                                                        
Query: 1262 tctctaaggtatgcgattcatcttataaccgcagctgcattgtcatgccagaaacggaaa 1321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 tctctaaggtatgcgattcatcttataaccgcagctgcattgtcatgccagaaacggaaa 1330

                                                                        
Query: 1322 gggaaagtcgtggaggttgaggatattcagagagtttacagactgttcttggatgtgagg 1381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 gggaaagtcgtggaggttgaggatattcagagagtttacagactgttcttggatgtgagg 1390

                                                                        
Query: 1382 agatcgatgcagtatcttgttgagtatcagagtcagtatatgttcagtgaaccaatcaaa 1441
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 agatcgatgcagtatcttgttgagtatcagagtcagtatatgttcagtgaaccaatcaaa 1450

                                                                        
Query: 1442 aacgatgaagctgctgcagaagacgaacaagatgctatgcagatctgaggatccacctct 1501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 aacgatgaagctgctgcagaagacgaacaagatgctatgcagatctgaggatccacctct 1510

                                                                        
Query: 1502 gtttgccttatttatcatgtttcgtggtgatatgtatgattaggatgttgaactcggatt 1561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 gtttgccttatttatcatgtttcgtggtgatatgtatgattaggatgttgaactcggatt 1570

                                                                        
Query: 1562 tatgtttttttttttttaagttgtgacgagattcggttctagaaaatgatttaaccaagt 1621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1571 tatgtttttttttttttaagttgtgacgagattcggttctagaaaatgatttaaccaagt 1630

                                  
Query: 1622 tcaatacagatcggtttggtac 1643
            ||||||||||||||||||||||
Sbjct: 1631 tcaatacagatcggtttggtac 1652
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA helicase GI:4521249
            from [Mus musculus]
          Length = 1422

 Score =  702 bits (354), Expect = 0.0
 Identities = 1058/1292 (81%), Gaps = 3/1292 (0%)
 Strand = Plus / Plus

                                                                        
Query: 80   atggcggaactaaagctatcagagagtcgggacttaaccagagtcgagcgaatcggcgca 139
            ||||| ||||||| | ||||||| | ||| |||||||| ||  ||||  ||||||| |||
Sbjct: 1    atggcagaactaaggttatcagaaactcgagacttaactaggatcgaaagaatcggagca 60

                                                                        
Query: 140  cactcacacatcagaggactaggtctcgactctgccctcgagccgcgagctgtttccgaa 199
            |||||||||||  ||||  ||||||||||||| |  |||||||| ||||| || ||||||
Sbjct: 61   cactcacacatacgaggtttaggtctcgactcagtactcgagccacgagccgtatccgaa 120

                                                                        
Query: 200  ggtatggtcggtcaagtgaaggcgcgtaaagccgccggtgtaatccttcagatgattaga 259
            || ||||| |||||| | || || |||||||||||||| |||| |||  || |||| |||
Sbjct: 121  ggaatggttggtcaaatcaaagcacgtaaagccgccggagtaaccctcgagttgatcaga 180

                                                                        
Query: 260  gaagggaaaatcgcgggtcgggctattctaatagcgggtcaacccggaacgggtaagaca 319
            || || |||||| ||||||||||||| || |||||||||||||||||||||||||| |  
Sbjct: 181  gacggcaaaatctcgggtcgggctatacttatagcgggtcaacccggaacgggtaaaatc 240

                                                                        
Query: 320  gcgattgcaatgggtatggcgaaatctcttggcttggaaactccttttgcgatgattgca 379
            || || ||||||||||| || ||||| |||||    ||||| || ||  | |||||||||
Sbjct: 241  gcaatagcaatgggtatagcaaaatcacttggacaagaaacaccattcactatgattgca 300

                                                                        
Query: 380  ggaagtgaaattttctcattagagatgtcaaagacagaagctttgactcagtcttttcgt 439
            |||||||| || || || ||||||||||||||||| |||||||| |||||  ||||||||
Sbjct: 301  ggaagtgagatcttttctttagagatgtcaaagactgaagctttaactcaagcttttcgt 360

                                                                        
Query: 440  aaagcgattggtgttaggatcaaagaagagacagaggttattgaaggagaagttgttgag 499
            ||||| |||||||||||||||||||||||||| || || || ||||||||||||||   |
Sbjct: 361  aaagctattggtgttaggatcaaagaagagactgacgtgatagaaggagaagttgtgacg 420

                                                                        
Query: 500  gttcagattgataggcctgcttcttctggtgttgcttccaagt---cagggaagatgact 556
             ||  ||||||||| |||||||||||||||| | ||   |||    | |||||||| || 
Sbjct: 421  atttcgattgatagacctgcttcttctggtggttctgtgaagaagactgggaagataaca 480

                                                                        
Query: 557  atgaaaacgactgatatggaaactgtgtatgatatgggagctaagatgattgaggctttg 616
            ||||| ||||||||||||||| ||   | |||| |||||   ||  |||||||| | |||
Sbjct: 481  atgaagacgactgatatggaatctaattttgatttgggatggaaattgattgagccattg 540

                                                                        
Query: 617  aacaaggagaaagtgcagagtggtgatgttattgccattgataaagctactgggaagatt 676
             | ||||||||||| |||||||||||||||||||   | ||||    |  ||||||||||
Sbjct: 541  gataaggagaaagtacagagtggtgatgttattgttttggataggttttgtgggaagatt 600

                                                                        
Query: 677  actaagcttggaagatcgttttcgaggtctcgtgattatgatgctatgggtgcgcagacc 736
            ||||||||||||||||| ||| |||||||| | |||| ||||| ||||||| |  |||| 
Sbjct: 601  actaagcttggaagatcttttacgaggtctagagattttgatgttatgggttcaaagact 660

                                                                        
Query: 737  aagtttgtgcagtgccctgaaggtgagttgcagaagaggaaagaggttgtacattgtgtc 796
            ||||||||||||||||||||||||||| |  |||||||||| |||||| | |||| ||||
Sbjct: 661  aagtttgtgcagtgccctgaaggtgagcttgagaagaggaaggaggttttgcattctgtc 720

                                                                        
Query: 797  actcttcacgagattgatgttatcaacagcaggacacaagggtttcttgcccttttcact 856
            || ||||| |||||||||||||| || |||||||| ||||||| ||| ||||| ||||| 
Sbjct: 721  acacttcatgagattgatgttattaatagcaggactcaagggtatctagccctcttcaca 780

                                                                        
Query: 857  ggcgatactggagaaatccgatcagaagtccgggaacaaattgatacaaaagtagctgaa 916
            || ||||| || || || || ||||||  ||| || ||||  ||||| ||||| || || 
Sbjct: 781  ggtgatacaggcgagattcgttcagaaacccgagagcaaagcgatactaaagtggcagag 840

                                                                        
Query: 917  tggagagaagaaggaaaagcagagatagttcccggagttctcttcattgatgaagtccac 976
            |||||||||||||| ||||| || ||||| || || ||||||||||||||||||||||| 
Sbjct: 841  tggagagaagaagggaaagctgaaatagtacctggtgttctcttcattgatgaagtccat 900

                                                                        
Query: 977  atgctcgacatcgaatgcttctcattccttaaccgagctctagaaaacgaaatgtcacca 1036
            ||||| || |||||||||||||| ||||| ||  ||||||| |||||||| |||||||||
Sbjct: 901  atgcttgatatcgaatgcttctctttcctgaatagagctctcgaaaacgatatgtcacca 960

                                                                        
Query: 1037 atccttgtggtggcaacaaaccgaggagtgacgacaatccgtggcacaaaccagaaatca 1096
            ||||| || ||||| |||||| ||||| |||| |||||||| || |||||||||| ||||
Sbjct: 961  atcctggtcgtggctacaaacagaggaatgacaacaatccgaggaacaaaccagatatca 1020

                                                                        
Query: 1097 ccacacgggatcccgattgatctccttgaccgtcttctcatcatcactacccaaccttac 1156
             |||| |||||||| || ||| | |||||||||||||| || ||||| || || ||||||
Sbjct: 1021 gcacatgggatcccaatcgattttcttgaccgtcttcttattatcacaacacagccttac 1080

                                                                        
Query: 1157 acagacgatgacataaggaagatattagaaatccgttgccaagaggaagacgttgagatg 1216
            ||| | || || || || || || ||||| |||||||||||||| || || || ||||||
Sbjct: 1081 acacaagacgagatcagaaatattttagagatccgttgccaagaagaggatgtggagatg 1140

                                                                        
Query: 1217 aacgaagaggccaaacagcttttgacattgatcggacgtgatacatctctaaggtatgcg 1276
            ||||| || || ||||||||| |||| ||||||||| || |||| || || ||||| |||
Sbjct: 1141 aacgaggaagcgaaacagcttctgactttgatcggatgtaatacctcgcttaggtacgcg 1200

                                                                        
Query: 1277 attcatcttataaccgcagctgcattgtcatgccagaaacggaaagggaaagtcgtggag 1336
            |||||||| || |  ||||||||  |  | |||| |||||| |||||||||||||| |||
Sbjct: 1201 attcatctaatcaatgcagctgccctagcttgcctgaaacgtaaagggaaagtcgtagag 1260

                                            
Query: 1337 gttgaggatattcagagagtttacagactgtt 1368
             || |||| ||| |||||||||| ||| ||||
Sbjct: 1261 attcaggacattgagagagtttatagattgtt 1292
>At3g10985.1 68416.m01326 wound-responsive protein-related similar to SP|P20144
            Wound-induced protein 1 {Solanum tuberosum}
          Length = 918

 Score = 40.1 bits (20), Expect = 0.058
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1566 tttttttttttttaagttgt 1585
            ||||||||||||||||||||
Sbjct: 754  tttttttttttttaagttgt 773
>At1g50440.2 68414.m05654 zinc finger (C3HC4-type RING finger) family protein
            contains Pfam profile: PF00097 zinc finger, C3HC4 type
            (RING finger)
          Length = 1302

 Score = 40.1 bits (20), Expect = 0.058
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1566 tttttttttttttaagttgt 1585
            ||||||||||||||||||||
Sbjct: 1168 tttttttttttttaagttgt 1187
>At1g50440.1 68414.m05653 zinc finger (C3HC4-type RING finger) family protein
            contains Pfam profile: PF00097 zinc finger, C3HC4 type
            (RING finger)
          Length = 1242

 Score = 40.1 bits (20), Expect = 0.058
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1566 tttttttttttttaagttgt 1585
            ||||||||||||||||||||
Sbjct: 1108 tttttttttttttaagttgt 1127
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,125
Number of Sequences: 29161
Number of extensions: 64125
Number of successful extensions: 2009
Number of sequences better than 10.0: 66
length of query: 1643
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1625
effective length of database: 43,533,334
effective search space: 70741667750
effective search space used: 70741667750
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)