BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18080.C1
(1643 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67630.1 68418.m08527 DNA helicase, putative similar to ... 3255 0.0
At3g49830.1 68416.m05448 DNA helicase-related similar to DN... 702 0.0
At3g10985.1 68416.m01326 wound-responsive protein-related s... 40 0.058
At1g50440.2 68414.m05654 zinc finger (C3HC4-type RING finge... 40 0.058
At1g50440.1 68414.m05653 zinc finger (C3HC4-type RING finge... 40 0.058
>At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-like DNA helicase
reptin [Danio rerio] GI:27733814, reptin [Drosophila
melanogaster] GI:7243682
Length = 1652
Score = 3255 bits (1642), Expect = 0.0
Identities = 1642/1642 (100%)
Strand = Plus / Plus
Query: 2 agcttttctctaaaccctaaaaccttaactttttgctcttctccctccgcctcaatcgca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 agcttttctctaaaccctaaaaccttaactttttgctcttctccctccgcctcaatcgca 70
Query: 62 cgaagacgataatcgaatatggcggaactaaagctatcagagagtcgggacttaaccaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 cgaagacgataatcgaatatggcggaactaaagctatcagagagtcgggacttaaccaga 130
Query: 122 gtcgagcgaatcggcgcacactcacacatcagaggactaggtctcgactctgccctcgag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gtcgagcgaatcggcgcacactcacacatcagaggactaggtctcgactctgccctcgag 190
Query: 182 ccgcgagctgtttccgaaggtatggtcggtcaagtgaaggcgcgtaaagccgccggtgta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ccgcgagctgtttccgaaggtatggtcggtcaagtgaaggcgcgtaaagccgccggtgta 250
Query: 242 atccttcagatgattagagaagggaaaatcgcgggtcgggctattctaatagcgggtcaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atccttcagatgattagagaagggaaaatcgcgggtcgggctattctaatagcgggtcaa 310
Query: 302 cccggaacgggtaagacagcgattgcaatgggtatggcgaaatctcttggcttggaaact 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cccggaacgggtaagacagcgattgcaatgggtatggcgaaatctcttggcttggaaact 370
Query: 362 ccttttgcgatgattgcaggaagtgaaattttctcattagagatgtcaaagacagaagct 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccttttgcgatgattgcaggaagtgaaattttctcattagagatgtcaaagacagaagct 430
Query: 422 ttgactcagtcttttcgtaaagcgattggtgttaggatcaaagaagagacagaggttatt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttgactcagtcttttcgtaaagcgattggtgttaggatcaaagaagagacagaggttatt 490
Query: 482 gaaggagaagttgttgaggttcagattgataggcctgcttcttctggtgttgcttccaag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gaaggagaagttgttgaggttcagattgataggcctgcttcttctggtgttgcttccaag 550
Query: 542 tcagggaagatgactatgaaaacgactgatatggaaactgtgtatgatatgggagctaag 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tcagggaagatgactatgaaaacgactgatatggaaactgtgtatgatatgggagctaag 610
Query: 602 atgattgaggctttgaacaaggagaaagtgcagagtggtgatgttattgccattgataaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atgattgaggctttgaacaaggagaaagtgcagagtggtgatgttattgccattgataaa 670
Query: 662 gctactgggaagattactaagcttggaagatcgttttcgaggtctcgtgattatgatgct 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gctactgggaagattactaagcttggaagatcgttttcgaggtctcgtgattatgatgct 730
Query: 722 atgggtgcgcagaccaagtttgtgcagtgccctgaaggtgagttgcagaagaggaaagag 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atgggtgcgcagaccaagtttgtgcagtgccctgaaggtgagttgcagaagaggaaagag 790
Query: 782 gttgtacattgtgtcactcttcacgagattgatgttatcaacagcaggacacaagggttt 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gttgtacattgtgtcactcttcacgagattgatgttatcaacagcaggacacaagggttt 850
Query: 842 cttgcccttttcactggcgatactggagaaatccgatcagaagtccgggaacaaattgat 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 cttgcccttttcactggcgatactggagaaatccgatcagaagtccgggaacaaattgat 910
Query: 902 acaaaagtagctgaatggagagaagaaggaaaagcagagatagttcccggagttctcttc 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 acaaaagtagctgaatggagagaagaaggaaaagcagagatagttcccggagttctcttc 970
Query: 962 attgatgaagtccacatgctcgacatcgaatgcttctcattccttaaccgagctctagaa 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 attgatgaagtccacatgctcgacatcgaatgcttctcattccttaaccgagctctagaa 1030
Query: 1022 aacgaaatgtcaccaatccttgtggtggcaacaaaccgaggagtgacgacaatccgtggc 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 aacgaaatgtcaccaatccttgtggtggcaacaaaccgaggagtgacgacaatccgtggc 1090
Query: 1082 acaaaccagaaatcaccacacgggatcccgattgatctccttgaccgtcttctcatcatc 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 acaaaccagaaatcaccacacgggatcccgattgatctccttgaccgtcttctcatcatc 1150
Query: 1142 actacccaaccttacacagacgatgacataaggaagatattagaaatccgttgccaagag 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1151 actacccaaccttacacagacgatgacataaggaagatattagaaatccgttgccaagag 1210
Query: 1202 gaagacgttgagatgaacgaagaggccaaacagcttttgacattgatcggacgtgataca 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1211 gaagacgttgagatgaacgaagaggccaaacagcttttgacattgatcggacgtgataca 1270
Query: 1262 tctctaaggtatgcgattcatcttataaccgcagctgcattgtcatgccagaaacggaaa 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1271 tctctaaggtatgcgattcatcttataaccgcagctgcattgtcatgccagaaacggaaa 1330
Query: 1322 gggaaagtcgtggaggttgaggatattcagagagtttacagactgttcttggatgtgagg 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1331 gggaaagtcgtggaggttgaggatattcagagagtttacagactgttcttggatgtgagg 1390
Query: 1382 agatcgatgcagtatcttgttgagtatcagagtcagtatatgttcagtgaaccaatcaaa 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 agatcgatgcagtatcttgttgagtatcagagtcagtatatgttcagtgaaccaatcaaa 1450
Query: 1442 aacgatgaagctgctgcagaagacgaacaagatgctatgcagatctgaggatccacctct 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 aacgatgaagctgctgcagaagacgaacaagatgctatgcagatctgaggatccacctct 1510
Query: 1502 gtttgccttatttatcatgtttcgtggtgatatgtatgattaggatgttgaactcggatt 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 gtttgccttatttatcatgtttcgtggtgatatgtatgattaggatgttgaactcggatt 1570
Query: 1562 tatgtttttttttttttaagttgtgacgagattcggttctagaaaatgatttaaccaagt 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1571 tatgtttttttttttttaagttgtgacgagattcggttctagaaaatgatttaaccaagt 1630
Query: 1622 tcaatacagatcggtttggtac 1643
||||||||||||||||||||||
Sbjct: 1631 tcaatacagatcggtttggtac 1652
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA helicase GI:4521249
from [Mus musculus]
Length = 1422
Score = 702 bits (354), Expect = 0.0
Identities = 1058/1292 (81%), Gaps = 3/1292 (0%)
Strand = Plus / Plus
Query: 80 atggcggaactaaagctatcagagagtcgggacttaaccagagtcgagcgaatcggcgca 139
||||| ||||||| | ||||||| | ||| |||||||| || |||| ||||||| |||
Sbjct: 1 atggcagaactaaggttatcagaaactcgagacttaactaggatcgaaagaatcggagca 60
Query: 140 cactcacacatcagaggactaggtctcgactctgccctcgagccgcgagctgtttccgaa 199
||||||||||| |||| ||||||||||||| | |||||||| ||||| || ||||||
Sbjct: 61 cactcacacatacgaggtttaggtctcgactcagtactcgagccacgagccgtatccgaa 120
Query: 200 ggtatggtcggtcaagtgaaggcgcgtaaagccgccggtgtaatccttcagatgattaga 259
|| ||||| |||||| | || || |||||||||||||| |||| ||| || |||| |||
Sbjct: 121 ggaatggttggtcaaatcaaagcacgtaaagccgccggagtaaccctcgagttgatcaga 180
Query: 260 gaagggaaaatcgcgggtcgggctattctaatagcgggtcaacccggaacgggtaagaca 319
|| || |||||| ||||||||||||| || |||||||||||||||||||||||||| |
Sbjct: 181 gacggcaaaatctcgggtcgggctatacttatagcgggtcaacccggaacgggtaaaatc 240
Query: 320 gcgattgcaatgggtatggcgaaatctcttggcttggaaactccttttgcgatgattgca 379
|| || ||||||||||| || ||||| ||||| ||||| || || | |||||||||
Sbjct: 241 gcaatagcaatgggtatagcaaaatcacttggacaagaaacaccattcactatgattgca 300
Query: 380 ggaagtgaaattttctcattagagatgtcaaagacagaagctttgactcagtcttttcgt 439
|||||||| || || || ||||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 301 ggaagtgagatcttttctttagagatgtcaaagactgaagctttaactcaagcttttcgt 360
Query: 440 aaagcgattggtgttaggatcaaagaagagacagaggttattgaaggagaagttgttgag 499
||||| |||||||||||||||||||||||||| || || || |||||||||||||| |
Sbjct: 361 aaagctattggtgttaggatcaaagaagagactgacgtgatagaaggagaagttgtgacg 420
Query: 500 gttcagattgataggcctgcttcttctggtgttgcttccaagt---cagggaagatgact 556
|| ||||||||| |||||||||||||||| | || ||| | |||||||| ||
Sbjct: 421 atttcgattgatagacctgcttcttctggtggttctgtgaagaagactgggaagataaca 480
Query: 557 atgaaaacgactgatatggaaactgtgtatgatatgggagctaagatgattgaggctttg 616
||||| ||||||||||||||| || | |||| ||||| || |||||||| | |||
Sbjct: 481 atgaagacgactgatatggaatctaattttgatttgggatggaaattgattgagccattg 540
Query: 617 aacaaggagaaagtgcagagtggtgatgttattgccattgataaagctactgggaagatt 676
| ||||||||||| ||||||||||||||||||| | |||| | ||||||||||
Sbjct: 541 gataaggagaaagtacagagtggtgatgttattgttttggataggttttgtgggaagatt 600
Query: 677 actaagcttggaagatcgttttcgaggtctcgtgattatgatgctatgggtgcgcagacc 736
||||||||||||||||| ||| |||||||| | |||| ||||| ||||||| | ||||
Sbjct: 601 actaagcttggaagatcttttacgaggtctagagattttgatgttatgggttcaaagact 660
Query: 737 aagtttgtgcagtgccctgaaggtgagttgcagaagaggaaagaggttgtacattgtgtc 796
||||||||||||||||||||||||||| | |||||||||| |||||| | |||| ||||
Sbjct: 661 aagtttgtgcagtgccctgaaggtgagcttgagaagaggaaggaggttttgcattctgtc 720
Query: 797 actcttcacgagattgatgttatcaacagcaggacacaagggtttcttgcccttttcact 856
|| ||||| |||||||||||||| || |||||||| ||||||| ||| ||||| |||||
Sbjct: 721 acacttcatgagattgatgttattaatagcaggactcaagggtatctagccctcttcaca 780
Query: 857 ggcgatactggagaaatccgatcagaagtccgggaacaaattgatacaaaagtagctgaa 916
|| ||||| || || || || |||||| ||| || |||| ||||| ||||| || ||
Sbjct: 781 ggtgatacaggcgagattcgttcagaaacccgagagcaaagcgatactaaagtggcagag 840
Query: 917 tggagagaagaaggaaaagcagagatagttcccggagttctcttcattgatgaagtccac 976
|||||||||||||| ||||| || ||||| || || |||||||||||||||||||||||
Sbjct: 841 tggagagaagaagggaaagctgaaatagtacctggtgttctcttcattgatgaagtccat 900
Query: 977 atgctcgacatcgaatgcttctcattccttaaccgagctctagaaaacgaaatgtcacca 1036
||||| || |||||||||||||| ||||| || ||||||| |||||||| |||||||||
Sbjct: 901 atgcttgatatcgaatgcttctctttcctgaatagagctctcgaaaacgatatgtcacca 960
Query: 1037 atccttgtggtggcaacaaaccgaggagtgacgacaatccgtggcacaaaccagaaatca 1096
||||| || ||||| |||||| ||||| |||| |||||||| || |||||||||| ||||
Sbjct: 961 atcctggtcgtggctacaaacagaggaatgacaacaatccgaggaacaaaccagatatca 1020
Query: 1097 ccacacgggatcccgattgatctccttgaccgtcttctcatcatcactacccaaccttac 1156
|||| |||||||| || ||| | |||||||||||||| || ||||| || || ||||||
Sbjct: 1021 gcacatgggatcccaatcgattttcttgaccgtcttcttattatcacaacacagccttac 1080
Query: 1157 acagacgatgacataaggaagatattagaaatccgttgccaagaggaagacgttgagatg 1216
||| | || || || || || || ||||| |||||||||||||| || || || ||||||
Sbjct: 1081 acacaagacgagatcagaaatattttagagatccgttgccaagaagaggatgtggagatg 1140
Query: 1217 aacgaagaggccaaacagcttttgacattgatcggacgtgatacatctctaaggtatgcg 1276
||||| || || ||||||||| |||| ||||||||| || |||| || || ||||| |||
Sbjct: 1141 aacgaggaagcgaaacagcttctgactttgatcggatgtaatacctcgcttaggtacgcg 1200
Query: 1277 attcatcttataaccgcagctgcattgtcatgccagaaacggaaagggaaagtcgtggag 1336
|||||||| || | |||||||| | | |||| |||||| |||||||||||||| |||
Sbjct: 1201 attcatctaatcaatgcagctgccctagcttgcctgaaacgtaaagggaaagtcgtagag 1260
Query: 1337 gttgaggatattcagagagtttacagactgtt 1368
|| |||| ||| |||||||||| ||| ||||
Sbjct: 1261 attcaggacattgagagagtttatagattgtt 1292
>At3g10985.1 68416.m01326 wound-responsive protein-related similar to SP|P20144
Wound-induced protein 1 {Solanum tuberosum}
Length = 918
Score = 40.1 bits (20), Expect = 0.058
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1566 tttttttttttttaagttgt 1585
||||||||||||||||||||
Sbjct: 754 tttttttttttttaagttgt 773
>At1g50440.2 68414.m05654 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 1302
Score = 40.1 bits (20), Expect = 0.058
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1566 tttttttttttttaagttgt 1585
||||||||||||||||||||
Sbjct: 1168 tttttttttttttaagttgt 1187
>At1g50440.1 68414.m05653 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 1242
Score = 40.1 bits (20), Expect = 0.058
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1566 tttttttttttttaagttgt 1585
||||||||||||||||||||
Sbjct: 1108 tttttttttttttaagttgt 1127
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,125
Number of Sequences: 29161
Number of extensions: 64125
Number of successful extensions: 2009
Number of sequences better than 10.0: 66
length of query: 1643
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1625
effective length of database: 43,533,334
effective search space: 70741667750
effective search space used: 70741667750
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)