BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18079.C1
(943 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67620.1 68418.m08526 expressed protein 1816 0.0
At1g72770.1 68414.m08414 protein phosphatase 2C P2C-HA / PP... 52 9e-06
At3g51150.1 68416.m05601 kinesin motor family protein conta... 48 1e-04
At5g33290.1 68418.m03948 exostosin family protein contains ... 46 5e-04
At5g62900.1 68418.m07893 expressed protein 44 0.002
>At5g67620.1 68418.m08526 expressed protein
Length = 946
Score = 1816 bits (916), Expect = 0.0
Identities = 936/943 (99%)
Strand = Plus / Plus
Query: 1 gtcgacatcttaatttacaaattctatctttctgttattttcttcttcttcttcctcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcgacatcttaatttacaaattctatctttctgttattttcttcttcttcttcctcttt 60
Query: 61 ttattttctaaatttatttgtttgtgtttaatcctttttatcgatctcaagcgacctctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttattttctaaatttatttgtttgtgtttaatcctttttatcgatctcaagcgacctctt 120
Query: 121 tgtcaaacctgacaatcccaaatgatgaagaattctgacgtcgctatttattaaaaccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtcaaacctgacaatcccaaatgatgaagaattctgacgtcgctatttattaaaaccaa 180
Query: 181 aacaatctcttcttatatactttagtttcagacaggaacccaacaaaaaaatcaaaactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aacaatctcttcttatatactttagtttcagacaggaacccaacaaaaaaatcaaaactc 240
Query: 241 ttttctcttttctttttttttgcnaaaaaaataaaaatggggaattgtcaagcggccgaa 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttctcttttctttttttttgcaaaaaaaataaaaatggggaattgtcaagcggccgaa 300
Query: 301 gcagcgacggttttgattcatcacccggcggagaacaaggtggagaggatttactggtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcagcgacggttttgattcatcacccggcggagaacaaggtggagaggatttactggtca 360
Query: 361 gtgacagcgagtgacatcatgaaatccaatcctggtcattacgttgcggtggtggtgacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtgacagcgagtgacatcatgaaatccaatcctggtcattacgttgcggtggtggtgacg 420
Query: 421 tcacctacgatgaagaacgagaaaggtttgccactgaagcagcttaaactccttcgtcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcacctacgatgaagaacgagaaaggtttgccactgaagcagcttaaactccttcgtcct 480
Query: 481 gacgacactttactcatcggacatgtctatcgtctcgtcagcttcgaagaggttttgaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gacgacactttactcatcggacatgtctatcgtctcgtcagcttcgaagaggttttgaac 540
Query: 541 gagtttgcgacgaagaaatgtgtgaagcttggcaagttattgaaagaaggaggagggctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gagtttgcgacgaagaaatgtgtgaagcttggcaagttattgaaagaaggaggagggctt 600
Query: 601 gacttgacgaagaagaagacgaaacacaggaagaagaagctggatcaggaaacgggcaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gacttgacgaagaagaagacgaaacacaggaagaagaagctggatcaggaaacgggcaaa 660
Query: 661 gtcaacccgaattcggatccgaatccgaaccaagatggcgctgataatgcggtcgccgga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gtcaacccgaattcggatccgaatccgaaccaagatggcgctgataatgcggtcgccgga 720
Query: 721 gaaaacgggggagatgggtttatgaggaggagccacggtggaggaagaggtggtggtggg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gaaaacgggggagatgggtttatgaggaggagccacggtggaggaagaggtggtggtggg 780
Query: 781 tggaggccagctttacacagcattccggaatttggatcctcatgagagctcttgatcaaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tggaggccagctttacacagcattccggaatttggatcctcatgagagctcttgatcaaa 840
Query: 841 agcgtagatattcttaaaccaactatcatccgacaacattgaaagttttatgtaaagcga 900
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 agcgtagatattcttaaagcaactatcatccgacaacattgaaagttttatgtaaagcga 900
Query: 901 tgaaactgttttctgtggcattaaagagatttcaatcttcgac 943
|| ||||||||||||||| |||| ||||||||| ||||||||
Sbjct: 901 tgttactgttttctgtggctttaatgagatttcagtcttcgac 943
>At1g72770.1 68414.m08414 protein phosphatase 2C P2C-HA / PP2C P2C-HA (P2C-HA)
identical to protein phosphatase 2C (AtP2C-HA)
GB:AJ003119 [Arabidopsis thaliana] (Plant Mol. Biol. 38
(5), 879-883 (1998))
Length = 2515
Score = 52.0 bits (26), Expect = 9e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 40 ttcttcttcttcttcctctttttattttct 69
||||||||||||||| ||||||||||||||
Sbjct: 105 ttcttcttcttcttcttctttttattttct 76
>At3g51150.1 68416.m05601 kinesin motor family protein contains Pfam domain,
PF00225: Kinesin motor domain
Length = 3698
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 39 tttcttcttcttcttcctcttttt 62
||||||||||||||||||||||||
Sbjct: 2176 tttcttcttcttcttcctcttttt 2153
>At5g33290.1 68418.m03948 exostosin family protein contains Pfam profile:
PF03016 Exostosin family
Length = 1866
Score = 46.1 bits (23), Expect = 5e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ttcttcttcttcttcctcttttt 62
|||||||||||||||||||||||
Sbjct: 444 ttcttcttcttcttcctcttttt 466
>At5g62900.1 68418.m07893 expressed protein
Length = 713
Score = 44.1 bits (22), Expect = 0.002
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 275 aaatggggaattgtcaagcggc 296
||||||||||||||||||||||
Sbjct: 74 aaatggggaattgtcaagcggc 95
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,845
Number of Sequences: 29161
Number of extensions: 78845
Number of successful extensions: 8131
Number of sequences better than 10.0: 1469
length of query: 943
length of database: 44,058,232
effective HSP length: 18
effective length of query: 925
effective length of database: 43,533,334
effective search space: 40268333950
effective search space used: 40268333950
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)