BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BT009721.F
(549 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67620.1 68418.m08526 expressed protein 1088 0.0
At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10... 42 0.005
At5g62900.1 68418.m07893 expressed protein 40 0.019
At3g03520.1 68416.m00351 phosphoesterase family protein low... 40 0.019
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 prote... 38 0.076
>At5g67620.1 68418.m08526 expressed protein
Length = 946
Score = 1088 bits (549), Expect = 0.0
Identities = 549/549 (100%)
Strand = Plus / Plus
Query: 1 atggggaattgtcaagcggccgaagcagcgacggttttgattcatcacccggcggagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atggggaattgtcaagcggccgaagcagcgacggttttgattcatcacccggcggagaac 336
Query: 61 aaggtggagaggatttactggtcagtgacagcgagtgacatcatgaaatccaatcctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaggtggagaggatttactggtcagtgacagcgagtgacatcatgaaatccaatcctggt 396
Query: 121 cattacgttgcggtggtggtgacgtcacctacgatgaagaacgagaaaggtttgccactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cattacgttgcggtggtggtgacgtcacctacgatgaagaacgagaaaggtttgccactg 456
Query: 181 aagcagcttaaactccttcgtcctgacgacactttactcatcggacatgtctatcgtctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aagcagcttaaactccttcgtcctgacgacactttactcatcggacatgtctatcgtctc 516
Query: 241 gtcagcttcgaagaggttttgaacgagtttgcgacgaagaaatgtgtgaagcttggcaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtcagcttcgaagaggttttgaacgagtttgcgacgaagaaatgtgtgaagcttggcaag 576
Query: 301 ttattgaaagaaggaggagggcttgacttgacgaagaagaagacgaaacacaggaagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttattgaaagaaggaggagggcttgacttgacgaagaagaagacgaaacacaggaagaag 636
Query: 361 aagctggatcaggaaacgggcaaagtcaacccgaattcggatccgaatccgaaccaagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aagctggatcaggaaacgggcaaagtcaacccgaattcggatccgaatccgaaccaagat 696
Query: 421 ggcgctgataatgcggtcgccggagaaaacgggggagatgggtttatgaggaggagccac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ggcgctgataatgcggtcgccggagaaaacgggggagatgggtttatgaggaggagccac 756
Query: 481 ggtggaggaagaggtggtggtgggtggaggccagctttacacagcattccggaatttgga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggtggaggaagaggtggtggtgggtggaggccagctttacacagcattccggaatttgga 816
Query: 541 tcctcatga 549
|||||||||
Sbjct: 817 tcctcatga 825
>At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 family protein very
low similarity to alpha-1,2-galactosyltransferase,
Schizosaccharomyces pombe [SP|Q09174]
Length = 1877
Score = 42.1 bits (21), Expect = 0.005
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 479 acggtggaggaagaggtggtggtgg 503
|||||||||||||||||||| ||||
Sbjct: 347 acggtggaggaagaggtggtcgtgg 371
>At5g62900.1 68418.m07893 expressed protein
Length = 713
Score = 40.1 bits (20), Expect = 0.019
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 atggggaattgtcaagcggc 20
||||||||||||||||||||
Sbjct: 76 atggggaattgtcaagcggc 95
>At3g03520.1 68416.m00351 phosphoesterase family protein low similarity to
SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3)
{Mycobacterium tuberculosis}; contains Pfam profile
PF04185: Phosphoesterase family
Length = 1737
Score = 40.1 bits (20), Expect = 0.019
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 401 atccgaatccgaaccaagat 420
||||||||||||||||||||
Sbjct: 208 atccgaatccgaaccaagat 227
>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein similar to
beta-glucan-elicitor receptor GI:1752734 from [Glycine
max]
Length = 2238
Score = 38.2 bits (19), Expect = 0.076
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 485 gaggaagaggtggtggtgg 503
|||||||||||||||||||
Sbjct: 97 gaggaagaggtggtggtgg 79
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,722
Number of Sequences: 29161
Number of extensions: 34722
Number of successful extensions: 3247
Number of sequences better than 10.0: 147
length of query: 549
length of database: 44,058,232
effective HSP length: 17
effective length of query: 532
effective length of database: 43,562,495
effective search space: 23175247340
effective search space used: 23175247340
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)