BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18078.C1
(1718 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67610.1 68418.m08525 expressed protein 3374 0.0
At3g49840.1 68416.m05449 proline-rich family protein contai... 88 3e-16
At1g28760.1 68414.m03537 expressed protein ; expression sup... 48 3e-04
At2g20330.1 68415.m02374 transducin family protein / WD-40 ... 38 0.24
At5g36850.1 68418.m04415 hypothetical protein similar to At... 36 0.95
>At5g67610.1 68418.m08525 expressed protein
Length = 1717
Score = 3374 bits (1702), Expect = 0.0
Identities = 1715/1718 (99%), Gaps = 1/1718 (0%)
Strand = Plus / Plus
Query: 1 ctgaaacccacaaggaagaaatcgatgggtgattatcgtcttctacgaaactccggcgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgaaacccacaaggaagaaatcgatgggtgattatcgtcttctacgaaactccggcgtc 60
Query: 61 gttatcggaataatcttgctacatctctttactttcgcctctcttgtttcatccgatgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttatcggaataatcttgctacatctctttactttcgcctctcttgtttcatccgatgaa 120
Query: 121 cttcagtttgttgtgggagaaagcggagagcttcaagtgactcctagtttagaggtaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttcagtttgttgtgggagaaagcggagagcttcaagtgactcctagtttagaggtaaaa 180
Query: 181 ggttctcctggattgaagccagatagaacctctctttgtgagaggattcatatccatgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggttctcctggattgaagccagatagaacctctctttgtgagaggattcatatccatgga 240
Query: 241 cttggaaggtttaaacatctagacaagtatgcacattcgctcaagttgatagttaacgcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttggaaggtttaaacatctagacaagtatgcacattcgctcaagttgatagttaacgcg 300
Query: 301 tcaatctctgggaaaacaaataacattgacgtttgctttcaccggaatttgtcgcgtgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaatctctgggaaaacaaataacattgacgtttgctttcaccggaatttgtcgcgtgga 360
Query: 361 attggaatgtgccctcatagtcgatgggagaaagcctctaaaggttcatgggttcagaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attggaatgtgccctcatagtcgatgggagaaagcctctaaaggttcatgggttcagaca 420
Query: 421 atgtcacccttcgaccataaaatccttgatgttagagtacctagctctaacaaggtctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgtcacccttcgaccataaaatccttgatgttagagtacctagctctaacaaggtctca 480
Query: 481 ttggaagtgtctgctgtagaagaattatttatgcatcgcatagtattcttactccttggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttggaagtgtctgctgtagaagaattatttatgcatcgcatagtattcttactccttggt 540
Query: 541 gctgtattactggcttcggcttctacactgagccaatctttagcgttttactacagtagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gctgtattactggcttcggcttctacactgagccaatctttagcgttttactacagtagt 600
Query: 601 gcaatggctgttggtattatccttgtcgtgctgcttgttctctttcagggaatgaagctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcaatggctgttggtattatccttgtcgtgctgcttgttctctttcagggaatgaagctt 660
Query: 661 ctacctactggacggagttcgtttgcattgttcatatactcaaccctgcttggtttgggt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctacctactggacggagttcgtttgcattgttcatatactcaaccctgcttggtttgggt 720
Query: 721 ggttttcttcttcgctacttacccggattgtttgaaagtctgctaacagagatgggaatc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggttttcttcttcgctacttacccggattgtttgaaagtctgctaacagagatgggaatc 780
Query: 781 gacgaagaaatgtacacacctgcggcgatttttgtgggggcgtttctgtctttgggtgga 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gacgaagaaatgtacacacctgcggcgatttttgtgggggcgtttctgtctttgggtgga 840
Query: 841 gcattttttggattttggactgtgaggaaacttattctgacggaagatggctccattgat 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gcattttttggattttggactgtgaggaaacttattctgacggaagatggctccattgat 900
Query: 901 gttagcacatcactatttgtttcttggtccatccgaattatggctgctgttttgatcctt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gttagcacatcactatttgtttcttggtccatccgaattatggctgctgttttgatcctt 960
Query: 961 cagagctctgtagatcctttacttgctggaggagccctgatatctgtaattcttatgtca 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 cagagctctgtagatcctttacttgctggaggagccctgatatctgtaattcttatgtca 1020
Query: 1021 tcgactttaaagaagatcaccagattgaagttccttctacgcttattcgagattccattg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tcgactttaaagaagatcaccagattgaagttccttctacgcttattcgagattccattg 1080
Query: 1081 aatttactgctaggaatctgggaggcaattcgtgatactgatataccatccgtcccggga 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aatttactgctaggaatctgggaggcaattcgtgatactgatataccatccgtcccggga 1140
Query: 1141 tatctccatgactttatgcaaaagagtcctgatgcttctggatttcgcaaccgtgtaact 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tatctccatgactttatgcaaaagagtcctgatgcttctggatttcgcaaccgtgtaact 1200
Query: 1201 tctgcttctccatcaggaggaatcaacaacgggatgcgagaatctccaccgtctgaatca 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 tctgcttctccatcaggaggaatcaacaacgggatgcgagaatctccaccgtctgaatca 1260
Query: 1261 gatacatttccttcctctttccataaaactcctgaaaggagccaactaacaaaagaagaa 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 gatacatttccttcctctttccataaaactcctgaaaggagccaactaacaaaagaagaa 1320
Query: 1321 tggaaaaagctcactaaggatagcacgacaaaggctgttcaagaattggtttcttcaccc 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 tggaaaaagctcactaaggatagcacgacaaaggctgttcaagaattggtttcttcaccc 1380
Query: 1381 gattttggcaaatgggcagcagttaatgcggataggatcaatgtaacaccaagaaaagga 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 gattttggcaaatgggcagcagttaatgcggataggatcaatgtaacaccaagaaaagga 1440
Query: 1441 tcttctagcaaaaaccagccacggaaatggatgcgttggttctgatttctgaaccaagcc 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 tcttctagcaaaaaccagccacggaaatggatgcgttggttctgatttctgaaccaagcc 1500
Query: 1501 ggtttaagtttcataacgtttagagagaaaaggaactcttttgtaaaaagagagagagcc 1560
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1501 ggtttaagtttcataacgtttagagagaaaaggaactcttttgtagaaagagagagagcc 1560
Query: 1561 tttgtaggtaaagttgctttcttcttttatgacttgttcagtgttttagctttttttttt 1620
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1561 tttgtaggtaaagttgctttcttcttttatgacttgttcagtgttttagc-ttttttttt 1619
Query: 1621 tgtggatgagaccacgatttgttgtaacgatcctaattgggtttttaggttgcgtcatct 1680
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1620 tgtggatgagaccacgatttgttgtaacgatcctaattgggtttttaggttgcgtcatgt 1679
Query: 1681 ttgtgtgtagacaatgcaatgagcattctttttccttt 1718
||||||||||||||||||||||||||||||||||||||
Sbjct: 1680 ttgtgtgtagacaatgcaatgagcattctttttccttt 1717
>At3g49840.1 68416.m05449 proline-rich family protein contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 2163
Score = 87.7 bits (44), Expect = 3e-16
Identities = 134/164 (81%)
Strand = Plus / Plus
Query: 850 ggattttggactgtgaggaaacttattctgacggaagatggctccattgatgttagcaca 909
|||||||||||||| | |||| || || |||| ||||||| || |||| |||| |||
Sbjct: 850 ggattttggactgtcaagaaatttgttgtgacaaaagatggttctgttgacattagtaca 909
Query: 910 tcactatttgtttcttggtccatccgaattatggctgctgttttgatccttcagagctct 969
||| | ||||| ||||||||||||||| | | |||| | | |||||||||||||||||
Sbjct: 910 tcaatctttgtctcttggtccatccgagcttttgctgtggctctgatccttcagagctct 969
Query: 970 gtagatcctttacttgctggaggagccctgatatctgtaattct 1013
||||||| ||||||||||||||||| ||||| ||| ||||||
Sbjct: 970 ttagatccattacttgctggaggagcgttgataactggaattct 1013
Score = 56.0 bits (28), Expect = 1e-06
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 328 gacgtttgctttcaccggaatttgtcgcgtggaattggaatgtg 371
||||||||||| ||| |||||| |||||||| ||||||||||||
Sbjct: 316 gacgtttgcttccacaggaattcgtcgcgtgcaattggaatgtg 359
Score = 34.2 bits (17), Expect = 3.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1363 gaattggtttcttcacc 1379
|||||||||||||||||
Sbjct: 1291 gaattggtttcttcacc 1307
>At1g28760.1 68414.m03537 expressed protein ; expression supported by MPSS
Length = 1431
Score = 48.1 bits (24), Expect = 3e-04
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 846 ttttggattttggactgtgaggaa 869
||||||||||||||||||||||||
Sbjct: 777 ttttggattttggactgtgaggaa 800
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat family
protein similar to Transcriptional repressor rco-1
(SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 2156
Score = 38.2 bits (19), Expect = 0.24
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 45 acgaaactccggcgtcgtt 63
|||||||||||||||||||
Sbjct: 232 acgaaactccggcgtcgtt 214
>At5g36850.1 68418.m04415 hypothetical protein similar to At1g27780, At2g05560,
At4g05280, At3g24385, At3g42590, At2g12110, At2g12100
Length = 696
Score = 36.2 bits (18), Expect = 0.95
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 886 gatggctccattgatgtt 903
||||||||||||||||||
Sbjct: 336 gatggctccattgatgtt 319
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 65,202
Number of Sequences: 29161
Number of extensions: 65202
Number of successful extensions: 1466
Number of sequences better than 10.0: 40
length of query: 1718
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1700
effective length of database: 43,533,334
effective search space: 74006667800
effective search space used: 74006667800
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)