BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18077.C1
(512 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67600.1 68418.m08524 expressed protein 995 0.0
At3g49840.1 68416.m05449 proline-rich family protein contai... 68 8e-11
At2g41420.1 68415.m05111 proline-rich family protein contai... 64 1e-09
At5g17650.1 68418.m02069 glycine/proline-rich protein glyci... 60 2e-08
At3g57160.1 68416.m06364 expressed protein 46 3e-04
>At5g67600.1 68418.m08524 expressed protein
Length = 515
Score = 995 bits (502), Expect = 0.0
Identities = 511/513 (99%), Gaps = 2/513 (0%)
Strand = Plus / Plus
Query: 1 gttataaaggaaaggaacagagtttgcttttaaacaaagaga--aagaaaaaaaagctca 58
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 gttataaaggaaaggaacagagtttgcttttaaacaaagagagaaagaaaaaaaagctca 60
Query: 59 aagaactcagaagaagaagaaagatgtatcatcaagaacaacatcctgtcggtgctcctc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagaactcagaagaagaagaaagatgtatcatcaagaacaacatcctgtcggtgctcctc 120
Query: 119 ctccccaagggtatccacctaaggacggttatcctccggccggttatcctccagccggtt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctccccaagggtatccacctaaggacggttatcctccggccggttatcctccagccggtt 180
Query: 179 atccaccgccaggatatgctcagggataccctgcacaaggttatcctccgccgcagtact 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atccaccgccaggatatgctcagggataccctgcacaaggttatcctccgccgcagtact 240
Query: 239 ctcaagctccgcagcagaagcaaaacgccggtatgcttgaaggatgtttggctgcgctct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctcaagctccgcagcagaagcaaaacgccggtatgcttgaaggatgtttggctgcgctct 300
Query: 299 gttgttgctgtctcttggatgcatgtttctgatcggaggataattatatacgttgcctca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttgttgctgtctcttggatgcatgtttctgatcggaggataattatatacgttgcctca 360
Query: 359 gtcaacttttatttcctcatatatgttatgtaatgttcaacaatctttcttctgttgtta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtcaacttttatttcctcatatatgttatgtaatgttcaacaatctttcttctgttgtta 420
Query: 419 tcttctttcaattcgaattttggtatcttatgttttattgactccgaccataattatctc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcttctttcaattcgaattttggtatcttatgttttattgactccgaccataattatctc 480
Query: 479 tctctttcataatccaatcacacgaattcgaaa 511
|||||||||||||||||||||||||||||||||
Sbjct: 481 tctctttcataatccaatcacacgaattcgaaa 513
>At3g49840.1 68416.m05449 proline-rich family protein contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 2163
Score = 67.9 bits (34), Expect = 8e-11
Identities = 91/108 (84%), Gaps = 4/108 (3%)
Strand = Plus / Plus
Query: 67 agaagaagaagaaagatgtatcatcaaga---acaacatcctgtcggtgctcctcctccc 123
||||||||||||| ||||| | ||||||| ||||||||| || |||||||||||||
Sbjct: 1442 agaagaagaagaa-gatgtcttatcaagacccacaacatcccgttagtgctcctcctcct 1500
Query: 124 caagggtatccacctaaggacggttatcctccggccggttatcctcca 171
||||||||||| |||||||| || ||||| || || || |||||||||
Sbjct: 1501 caagggtatcctcctaaggaaggatatccaccagcagggtatcctcca 1548
Score = 46.1 bits (23), Expect = 3e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 277 gaaggatgtttggctgcgctctgttgttgctgtctcttggatgcatgtttctgatcgga 335
||||||||||||||| |||||| |||||| ||||||||| || || || ||||||||
Sbjct: 1777 gaaggatgtttggctatgctctgctgttgcgttctcttggaagcttgcttttgatcgga 1835
Score = 32.2 bits (16), Expect = 4.3
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 148 tatcctccggccggttatcctcca 171
|||||||| || ||||||||||||
Sbjct: 1588 tatcctccagcaggttatcctcca 1611
Score = 32.2 bits (16), Expect = 4.3
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 163 tatcctccagccggttatcc 182
||||||||||| ||||||||
Sbjct: 1588 tatcctccagcaggttatcc 1607
>At2g41420.1 68415.m05111 proline-rich family protein contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 765
Score = 63.9 bits (32), Expect = 1e-09
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 277 gaaggatgtttggctgcgctctgttgttgctgtctcttggatgcatgtttctgatcggag 336
||||||||| | ||||| || ||||||||||||||||||||||| || ||||||| ||||
Sbjct: 395 gaaggatgtcttgctgctctgtgttgttgctgtctcttggatgcttgcttctgattggag 454
Score = 36.2 bits (18), Expect = 0.28
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 197 ctcagggataccctgcacaaggttatcctc 226
|||||||||| ||| ||||||||||||||
Sbjct: 282 ctcagggatatcctcaacaaggttatcctc 311
>At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/proline-rich
protein GPRP - Arabidopsis thaliana, EMBL:X84315
Length = 993
Score = 60.0 bits (30), Expect = 2e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 145 ggttatcctccggccggttatcctccagccggttatcc 182
||||||||||| || |||||||||||||||||||||||
Sbjct: 374 ggttatcctcccgctggttatcctccagccggttatcc 411
Score = 40.1 bits (20), Expect = 0.018
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 145 ggttatcctccggccggttatcct 168
||||||||||| ||||||||||||
Sbjct: 389 ggttatcctccagccggttatcct 412
Score = 36.2 bits (18), Expect = 0.28
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 145 ggttatcctccggccggttatcctccagccggttatcc 182
||||| ||||| || ||||||||||| || ||||||||
Sbjct: 359 ggttaccctcctgctggttatcctcccgctggttatcc 396
>At3g57160.1 68416.m06364 expressed protein
Length = 609
Score = 46.1 bits (23), Expect = 3e-04
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 268 ggtatgcttgaaggatgtttggctgcgctctgttgttgctgtctcttggatgcatgtttc 327
|||||||||||||||||| | ||||| || || |||| |||| ||||||| || || |||
Sbjct: 305 ggtatgcttgaaggatgtattgctgctctgtgctgttactgtgtcttggacgcttgcttc 364
Query: 328 tga 330
|||
Sbjct: 365 tga 367
Score = 34.2 bits (17), Expect = 1.1
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 199 cagggataccctgcacaaggttatcctcc 227
|||||||| ||| |||||||||||||||
Sbjct: 185 cagggatatcctcaacaaggttatcctcc 213
Score = 32.2 bits (16), Expect = 4.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 214 caaggttatcctccgc 229
||||||||||||||||
Sbjct: 215 caaggttatcctccgc 230
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,319
Number of Sequences: 29161
Number of extensions: 40319
Number of successful extensions: 7578
Number of sequences better than 10.0: 216
length of query: 512
length of database: 44,058,232
effective HSP length: 17
effective length of query: 495
effective length of database: 43,562,495
effective search space: 21563435025
effective search space used: 21563435025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)