BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.sd.18076.C1
         (732 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67590.1  68418.m08523 NADH-ubiquinone oxidoreductase-rel...  1449   0.0  
At5g56190.2  68418.m07011 WD-40 repeat family protein contai...    40   0.026
At4g39840.1  68417.m05645 expressed protein                        40   0.026
At1g18770.1  68414.m02340 zinc finger (C3HC4-type RING finge...    40   0.026
At5g46280.1  68418.m05697 DNA replication licensing factor, ...    38   0.10 
>At5g67590.1 68418.m08523 NADH-ubiquinone oxidoreductase-related contains weak
           similarity to NADH-ubiquinone oxidoreductase 21 kDa
           subunit, mitochondrial precursor (EC 1.6.5.3) (EC
           1.6.99.3) (Complex I-21KD) (CI-21KD).
           (Swiss-Prot:P25711) [Neurospora crassa]; contains Pfam
           PF04800: ETC complex I subunit conserved region
          Length = 731

 Score = 1449 bits (731), Expect = 0.0
 Identities = 731/731 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaagtagaagaaaccaaagcgaaatcaaaaagctcagcaattttccagatttctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acagaagtagaagaaaccaaagcgaaatcaaaaagctcagcaattttccagatttctcta 60

                                                                       
Query: 61  attgacgatggcgctttgtgctactactcaaaggactatccgtatagcggcgacgctccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attgacgatggcgctttgtgctactactcaaaggactatccgtatagcggcgacgctccg 120

                                                                       
Query: 121 gcgtgttgctcgacctttcgctactgacgcggtggttgagtcggattacaagcgtggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcgtgttgctcgacctttcgctactgacgcggtggttgagtcggattacaagcgtggtga 180

                                                                       
Query: 181 gatcggtaaggtctccggaatcccagaggagcatctttctcgcaaggtgataatatactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatcggtaaggtctccggaatcccagaggagcatctttctcgcaaggtgataatatactc 240

                                                                       
Query: 241 acctgctagaacagctacccagtcaggatctggaaaactcggaaaatggaagattaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acctgctagaacagctacccagtcaggatctggaaaactcggaaaatggaagattaactt 300

                                                                       
Query: 301 cgtctccaccttaaagtgggagaatccgttgatgggatggacttctacaggtgaccccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgtctccaccttaaagtgggagaatccgttgatgggatggacttctacaggtgaccccta 360

                                                                       
Query: 361 tgctaatgttggtgactctgctcttgcttttgattctgaagaagctgctaagtcttttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgctaatgttggtgactctgctcttgcttttgattctgaagaagctgctaagtcttttgc 420

                                                                       
Query: 421 tgagcgtcatggttgggattataaggtcaagaagcccaacacaccattattgaaggtcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgagcgtcatggttgggattataaggtcaagaagcccaacacaccattattgaaggtcaa 480

                                                                       
Query: 481 gtcttactcggacaacttcaagtggaaaggcaatcctcaaccagaaaactgatgttacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtcttactcggacaacttcaagtggaaaggcaatcctcaaccagaaaactgatgttacac 540

                                                                       
Query: 541 cttcttccaattcttctcgagcaaaagaagaaacctcatttgatattaattctcatgttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cttcttccaattcttctcgagcaaaagaagaaacctcatttgatattaattctcatgttt 600

                                                                       
Query: 601 ctttgttattttagcatctgtgagctttttggttgaaaagaaccattatccatggctatg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctttgttattttagcatctgtgagctttttggttgaaaagaaccattatccatggctatg 660

                                                                       
Query: 661 tttacttattacaataatatgatgatgatgatgaaacacactcctttgatatttcatcaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tttacttattacaataatatgatgatgatgatgaaacacactcctttgatatttcatcaa 720

                      
Query: 721 gatttctgatc 731
           |||||||||||
Sbjct: 721 gatttctgatc 731
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2 significant)
           WD-40 repeats (PF0400); similar to beta transducin-like
           protein HET-E2C*40 (GI:17225208) [Podospora anserina]
          Length = 1777

 Score = 40.1 bits (20), Expect = 0.026
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 679 atgatgatgatgatgaaaca 698
           ||||||||||||||||||||
Sbjct: 138 atgatgatgatgatgaaaca 119
>At4g39840.1 68417.m05645 expressed protein
          Length = 1914

 Score = 40.1 bits (20), Expect = 0.026
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 679 atgatgatgatgatgaaaca 698
           ||||||||||||||||||||
Sbjct: 626 atgatgatgatgatgaaaca 607

 Score = 32.2 bits (16), Expect = 6.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 679 atgatgatgatgatga 694
           ||||||||||||||||
Sbjct: 629 atgatgatgatgatga 614
>At1g18770.1 68414.m02340 zinc finger (C3HC4-type RING finger) family protein
           contains Pfam profile: PF00097 zinc finger, C3HC4 type
           (RING finger)
          Length = 321

 Score = 40.1 bits (20), Expect = 0.026
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 510 gcaatcctcaaccagaaaac 529
           ||||||||||||||||||||
Sbjct: 32  gcaatcctcaaccagaaaac 51
>At5g46280.1 68418.m05697 DNA replication licensing factor, putative similar to
            SP|Q43704 DNA replication licensing factor MCM3 homolog
            (Replication origin activator) (ROA protein) {Zea mays};
            contains Pfam profile PF00493: MCM2/3/5 family
          Length = 2588

 Score = 38.2 bits (19), Expect = 0.10
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 675  taatatgatgatgatgatg 693
            |||||||||||||||||||
Sbjct: 2428 taatatgatgatgatgatg 2410
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,164
Number of Sequences: 29161
Number of extensions: 34164
Number of successful extensions: 2826
Number of sequences better than 10.0: 484
length of query: 732
length of database: 44,058,232
effective HSP length: 17
effective length of query: 715
effective length of database: 43,562,495
effective search space: 31147183925
effective search space used: 31147183925
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)