BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18076.C1
(732 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67590.1 68418.m08523 NADH-ubiquinone oxidoreductase-rel... 1449 0.0
At5g56190.2 68418.m07011 WD-40 repeat family protein contai... 40 0.026
At4g39840.1 68417.m05645 expressed protein 40 0.026
At1g18770.1 68414.m02340 zinc finger (C3HC4-type RING finge... 40 0.026
At5g46280.1 68418.m05697 DNA replication licensing factor, ... 38 0.10
>At5g67590.1 68418.m08523 NADH-ubiquinone oxidoreductase-related contains weak
similarity to NADH-ubiquinone oxidoreductase 21 kDa
subunit, mitochondrial precursor (EC 1.6.5.3) (EC
1.6.99.3) (Complex I-21KD) (CI-21KD).
(Swiss-Prot:P25711) [Neurospora crassa]; contains Pfam
PF04800: ETC complex I subunit conserved region
Length = 731
Score = 1449 bits (731), Expect = 0.0
Identities = 731/731 (100%)
Strand = Plus / Plus
Query: 1 acagaagtagaagaaaccaaagcgaaatcaaaaagctcagcaattttccagatttctcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagaagtagaagaaaccaaagcgaaatcaaaaagctcagcaattttccagatttctcta 60
Query: 61 attgacgatggcgctttgtgctactactcaaaggactatccgtatagcggcgacgctccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attgacgatggcgctttgtgctactactcaaaggactatccgtatagcggcgacgctccg 120
Query: 121 gcgtgttgctcgacctttcgctactgacgcggtggttgagtcggattacaagcgtggtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcgtgttgctcgacctttcgctactgacgcggtggttgagtcggattacaagcgtggtga 180
Query: 181 gatcggtaaggtctccggaatcccagaggagcatctttctcgcaaggtgataatatactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatcggtaaggtctccggaatcccagaggagcatctttctcgcaaggtgataatatactc 240
Query: 241 acctgctagaacagctacccagtcaggatctggaaaactcggaaaatggaagattaactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acctgctagaacagctacccagtcaggatctggaaaactcggaaaatggaagattaactt 300
Query: 301 cgtctccaccttaaagtgggagaatccgttgatgggatggacttctacaggtgaccccta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgtctccaccttaaagtgggagaatccgttgatgggatggacttctacaggtgaccccta 360
Query: 361 tgctaatgttggtgactctgctcttgcttttgattctgaagaagctgctaagtcttttgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgctaatgttggtgactctgctcttgcttttgattctgaagaagctgctaagtcttttgc 420
Query: 421 tgagcgtcatggttgggattataaggtcaagaagcccaacacaccattattgaaggtcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgagcgtcatggttgggattataaggtcaagaagcccaacacaccattattgaaggtcaa 480
Query: 481 gtcttactcggacaacttcaagtggaaaggcaatcctcaaccagaaaactgatgttacac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtcttactcggacaacttcaagtggaaaggcaatcctcaaccagaaaactgatgttacac 540
Query: 541 cttcttccaattcttctcgagcaaaagaagaaacctcatttgatattaattctcatgttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cttcttccaattcttctcgagcaaaagaagaaacctcatttgatattaattctcatgttt 600
Query: 601 ctttgttattttagcatctgtgagctttttggttgaaaagaaccattatccatggctatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctttgttattttagcatctgtgagctttttggttgaaaagaaccattatccatggctatg 660
Query: 661 tttacttattacaataatatgatgatgatgatgaaacacactcctttgatatttcatcaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tttacttattacaataatatgatgatgatgatgaaacacactcctttgatatttcatcaa 720
Query: 721 gatttctgatc 731
|||||||||||
Sbjct: 721 gatttctgatc 731
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2 significant)
WD-40 repeats (PF0400); similar to beta transducin-like
protein HET-E2C*40 (GI:17225208) [Podospora anserina]
Length = 1777
Score = 40.1 bits (20), Expect = 0.026
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 679 atgatgatgatgatgaaaca 698
||||||||||||||||||||
Sbjct: 138 atgatgatgatgatgaaaca 119
>At4g39840.1 68417.m05645 expressed protein
Length = 1914
Score = 40.1 bits (20), Expect = 0.026
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 679 atgatgatgatgatgaaaca 698
||||||||||||||||||||
Sbjct: 626 atgatgatgatgatgaaaca 607
Score = 32.2 bits (16), Expect = 6.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 679 atgatgatgatgatga 694
||||||||||||||||
Sbjct: 629 atgatgatgatgatga 614
>At1g18770.1 68414.m02340 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 321
Score = 40.1 bits (20), Expect = 0.026
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 510 gcaatcctcaaccagaaaac 529
||||||||||||||||||||
Sbjct: 32 gcaatcctcaaccagaaaac 51
>At5g46280.1 68418.m05697 DNA replication licensing factor, putative similar to
SP|Q43704 DNA replication licensing factor MCM3 homolog
(Replication origin activator) (ROA protein) {Zea mays};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 2588
Score = 38.2 bits (19), Expect = 0.10
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 675 taatatgatgatgatgatg 693
|||||||||||||||||||
Sbjct: 2428 taatatgatgatgatgatg 2410
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,164
Number of Sequences: 29161
Number of extensions: 34164
Number of successful extensions: 2826
Number of sequences better than 10.0: 484
length of query: 732
length of database: 44,058,232
effective HSP length: 17
effective length of query: 715
effective length of database: 43,562,495
effective search space: 31147183925
effective search space used: 31147183925
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)