BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18075.C1
(1421 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67580.1 68418.m08521 myb family transcription factor co... 2793 0.0
At5g67580.2 68418.m08522 myb family transcription factor co... 2492 0.0
At3g49850.1 68416.m05450 myb family transcription factor co... 206 4e-52
At1g49950.3 68414.m05604 DNA-binding protein, putative cont... 58 2e-07
At1g49950.2 68414.m05603 DNA-binding protein, putative cont... 58 2e-07
>At5g67580.1 68418.m08521 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 1799
Score = 2793 bits (1409), Expect = 0.0
Identities = 1419/1421 (99%), Gaps = 1/1421 (0%)
Strand = Plus / Plus
Query: 1 atggatattcttcttccttatgctagcctctctggtcttcttcttcttcgttcgtttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 atggatattcttcttccttatgctagcctctctggtcttcttcttcttcgttcgtttcag 61
Query: 61 cgaatcacatttgatctatgacacatctatacaaggaattagctttcatcatcaagtctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cgaatcacatttgatctatgacacatctatacaaggaattagctttcatcatcaagtctc 121
Query: 121 tctctcgaaaactctcctttggcttcgtttgatctgagaaaagaagaaattcaaatattg 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 122 tctctcgaaaactctcctttggtttcgtttgatctgagaaaagaagaaattcaaatattg 181
Query: 181 ataactgtggatgggtgcaccaaagcagaagtggacaccggaagaagaagcagctcttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ataactgtggatgggtgcaccaaagcagaagtggacaccggaagaagaagcagctcttaa 241
Query: 241 agctggagttcttaagcatgggactgggaagtggcgtaccatactctcggatactgagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agctggagttcttaagcatgggactgggaagtggcgtaccatactctcggatactgagtt 301
Query: 301 tagtttaatccttaagtctcgctctaatgttgatcttaaggacaaatggagaaatataag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tagtttaatccttaagtctcgctctaatgttgatcttaaggacaaatggagaaatataag 361
Query: 361 cgtgacagctttatggggttcaaggaagaaggctaaacttgcgcttaagaggactccacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cgtgacagctttatggggttcaaggaagaaggctaaacttgcgcttaagaggactccacc 421
Query: 421 aggtactaaacaggatgataacaacacagctcttaccattgtggctttgactaatgatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aggtactaaacaggatgataacaacacagctcttaccattgtggctttgactaatgatga 481
Query: 481 tgaacgtgcaaaaccaacttcccccggaggttctggtggtggatcaccacgcacttgtgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgaacgtgcaaaaccaacttcccccggaggttctggtggtggatcaccacgcacttgtgc 541
Query: 541 ttctaagagatcaattacaagtttggataagatcatctttgaggcaattaccaacttgag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttctaagagatcaattacaagtttggataagatcatctttgaggcaattaccaacttgag 601
Query: 601 ggaactacgcggttctgacagaacatcaatctttctgtatatagaggagaatttcaagac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ggaactacgcggttctgacagaacatcaatctttctgtatatagaggagaatttcaagac 661
Query: 661 tccaccgaatatgaaaaggcatgtcgcagtacgattaaagcatttatcatcgaatggaac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tccaccgaatatgaaaaggcatgtcgcagtacgattaaagcatttatcatcgaatggaac 721
Query: 721 attagttaagataaagcacaagtacaggttttcttctaattttattcccgcaggtgcaag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 attagttaagataaagcacaagtacaggttttcttctaattttattcccgcaggtgcaag 781
Query: 781 acagaaggctcctcaactctttctggaaggaaacaacaagaaagacccaacaaaacccga 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 acagaaggctcctcaactctttctggaaggaaacaacaagaaagacccaacaaaacccga 841
Query: 841 ggagaacggtgccaacagtctcactaaattccgagtagacggtgaattatatatgataaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ggagaacggtgccaacagtctcactaaattccgagtagacggtgaattatatatgataaa 901
Query: 901 aggcatgacagctcaagaagctgcagaggctgcagcaagagcagttgcagaggcagaatt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 aggcatgacagctcaagaagctgcagaggctgcagcaagagcagttgcagaggcagaatt 961
Query: 961 tgctatcacagaggctgaacaagcagcaaaagaggcagaaagagcagaagcagaagctga 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 tgctatcacagaggctgaacaagcagcaaaagaggcagaaagagcagaagcagaagctga 1021
Query: 1021 agctgctcagatatttgcaaaggcagccatgaaagctttgaagttcaggatccgtaatca 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 agctgctcagatatttgcaaaggcagccatgaaagctttgaagttcaggatccgtaatca 1081
Query: 1081 tccttggtgaaacagaaagaaatagccatcatggggaagttctgtaacaaagcaagccat 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 tccttggtgaaacagaaagaaatagccatcatggggaagttctgtaacaaagcaagccat 1141
Query: 1141 aaaatatatatacttagtgggtttactggtttcttaagagtgccgatcttgaatcaggcg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 aaaatatatatacttagtgggtttactggtttcttaagagtgccgatcttgaatcaggcg 1201
Query: 1201 atatctcatcacctgcagagttttttaagtttccaaacctatctgctctcttttttttgg 1260
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1202 atatctcatcacctgcagagttttttaagtttccaaacctatctgctctc-tttttttgg 1260
Query: 1261 ttagtaacagtgtaaatccgcagtttgatcatatgtatgttctttctccgaatctgagat 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ttagtaacagtgtaaatccgcagtttgatcatatgtatgttctttctccgaatctgagat 1320
Query: 1321 tctgtataactgatcttttattgtatgtggatgatctgtttagtaaccttgaaactattt 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 tctgtataactgatcttttattgtatgtggatgatctgtttagtaaccttgaaactattt 1380
Query: 1381 tgaagtgagatgagtaagcaaaaaaattgagattttgttct 1421
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 tgaagtgagatgagtaagcaaaaaaattgagattttgttct 1421
>At5g67580.2 68418.m08522 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 1720
Score = 2492 bits (1257), Expect = 0.0
Identities = 1264/1265 (99%), Gaps = 1/1265 (0%)
Strand = Plus / Plus
Query: 157 agaaaagaagaaattcaaatattgataactgtggatgggtgcaccaaagcagaagtggac 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 agaaaagaagaaattcaaatattgataactgtggatgggtgcaccaaagcagaagtggac 138
Query: 217 accggaagaagaagcagctcttaaagctggagttcttaagcatgggactgggaagtggcg 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 accggaagaagaagcagctcttaaagctggagttcttaagcatgggactgggaagtggcg 198
Query: 277 taccatactctcggatactgagtttagtttaatccttaagtctcgctctaatgttgatct 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 taccatactctcggatactgagtttagtttaatccttaagtctcgctctaatgttgatct 258
Query: 337 taaggacaaatggagaaatataagcgtgacagctttatggggttcaaggaagaaggctaa 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 taaggacaaatggagaaatataagcgtgacagctttatggggttcaaggaagaaggctaa 318
Query: 397 acttgcgcttaagaggactccaccaggtactaaacaggatgataacaacacagctcttac 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acttgcgcttaagaggactccaccaggtactaaacaggatgataacaacacagctcttac 378
Query: 457 cattgtggctttgactaatgatgatgaacgtgcaaaaccaacttcccccggaggttctgg 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cattgtggctttgactaatgatgatgaacgtgcaaaaccaacttcccccggaggttctgg 438
Query: 517 tggtggatcaccacgcacttgtgcttctaagagatcaattacaagtttggataagatcat 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tggtggatcaccacgcacttgtgcttctaagagatcaattacaagtttggataagatcat 498
Query: 577 ctttgaggcaattaccaacttgagggaactacgcggttctgacagaacatcaatctttct 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctttgaggcaattaccaacttgagggaactacgcggttctgacagaacatcaatctttct 558
Query: 637 gtatatagaggagaatttcaagactccaccgaatatgaaaaggcatgtcgcagtacgatt 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtatatagaggagaatttcaagactccaccgaatatgaaaaggcatgtcgcagtacgatt 618
Query: 697 aaagcatttatcatcgaatggaacattagttaagataaagcacaagtacaggttttcttc 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaagcatttatcatcgaatggaacattagttaagataaagcacaagtacaggttttcttc 678
Query: 757 taattttattcccgcaggtgcaagacagaaggctcctcaactctttctggaaggaaacaa 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 taattttattcccgcaggtgcaagacagaaggctcctcaactctttctggaaggaaacaa 738
Query: 817 caagaaagacccaacaaaacccgaggagaacggtgccaacagtctcactaaattccgagt 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 caagaaagacccaacaaaacccgaggagaacggtgccaacagtctcactaaattccgagt 798
Query: 877 agacggtgaattatatatgataaaaggcatgacagctcaagaagctgcagaggctgcagc 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agacggtgaattatatatgataaaaggcatgacagctcaagaagctgcagaggctgcagc 858
Query: 937 aagagcagttgcagaggcagaatttgctatcacagaggctgaacaagcagcaaaagaggc 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 aagagcagttgcagaggcagaatttgctatcacagaggctgaacaagcagcaaaagaggc 918
Query: 997 agaaagagcagaagcagaagctgaagctgctcagatatttgcaaaggcagccatgaaagc 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 agaaagagcagaagcagaagctgaagctgctcagatatttgcaaaggcagccatgaaagc 978
Query: 1057 tttgaagttcaggatccgtaatcatccttggtgaaacagaaagaaatagccatcatgggg 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 tttgaagttcaggatccgtaatcatccttggtgaaacagaaagaaatagccatcatgggg 1038
Query: 1117 aagttctgtaacaaagcaagccataaaatatatatacttagtgggtttactggtttctta 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 aagttctgtaacaaagcaagccataaaatatatatacttagtgggtttactggtttctta 1098
Query: 1177 agagtgccgatcttgaatcaggcgatatctcatcacctgcagagttttttaagtttccaa 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 agagtgccgatcttgaatcaggcgatatctcatcacctgcagagttttttaagtttccaa 1158
Query: 1237 acctatctgctctcttttttttggttagtaacagtgtaaatccgcagtttgatcatatgt 1296
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 acctatctgctctc-tttttttggttagtaacagtgtaaatccgcagtttgatcatatgt 1217
Query: 1297 atgttctttctccgaatctgagattctgtataactgatcttttattgtatgtggatgatc 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1218 atgttctttctccgaatctgagattctgtataactgatcttttattgtatgtggatgatc 1277
Query: 1357 tgtttagtaaccttgaaactattttgaagtgagatgagtaagcaaaaaaattgagatttt 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1278 tgtttagtaaccttgaaactattttgaagtgagatgagtaagcaaaaaaattgagatttt 1337
Query: 1417 gttct 1421
|||||
Sbjct: 1338 gttct 1342
Score = 155 bits (78), Expect = 1e-36
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 38 ttcttcttcttcgttcgtttcagcgaatcacatttgatctatgacacatctatacaagga 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcttcttcttcgttcgtttcagcgaatcacatttgatctatgacacatctatacaagga 60
Query: 98 attagctttcatcatcaa 115
||||||||||||||||||
Sbjct: 61 attagctttcatcatcaa 78
>At3g49850.1 68416.m05450 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 1373
Score = 206 bits (104), Expect = 4e-52
Identities = 200/232 (86%)
Strand = Plus / Plus
Query: 186 tgtggatgggtgcaccaaagcagaagtggacaccggaagaagaagcagctcttaaagctg 245
|||| ||||| || ||||||| |||||||||||| ||||||||| |||||||||||||||
Sbjct: 216 tgtgaatgggagctccaaagctgaagtggacaccagaagaagaaacagctcttaaagctg 275
Query: 246 gagttcttaagcatgggactgggaagtggcgtaccatactctcggatactgagtttagtt 305
|||| ||||| ||||| ||||| || ||||||||||| ||||| ||| ||| || |||
Sbjct: 276 gagtacttaaacatggaactggaaaatggcgtaccattctctcagatcctgtgtatagca 335
Query: 306 taatccttaagtctcgctctaatgttgatcttaaggacaaatggagaaatataagcgtga 365
||| || |||||||| |||||||| ||||| ||||||||||||||||||||||| || |
Sbjct: 336 caattctgaagtctcgttctaatgtggatctcaaggacaaatggagaaatataagtgtaa 395
Query: 366 cagctttatggggttcaaggaagaaggctaaacttgcgcttaagaggactcc 417
||||||||||||| || |||||||||||||| ||||| ||||| || |||||
Sbjct: 396 cagctttatggggatctaggaagaaggctaagcttgctcttaaaagaactcc 447
Score = 107 bits (54), Expect = 3e-22
Identities = 111/130 (85%)
Strand = Plus / Plus
Query: 935 gcaagagcagttgcagaggcagaatttgctatcacagaggctgaacaagcagcaaaagag 994
|||||||| || ||||| ||||||||||| || |||| |||||| ||||||||| ||||
Sbjct: 953 gcaagagctgtggcagaagcagaatttgcaatggcagaagctgaagaagcagcaagagag 1012
Query: 995 gcagaaagagcagaagcagaagctgaagctgctcagatatttgcaaaggcagccatgaaa 1054
||||| | ||||||||| |||||||||||||| || || |||||||| || || ||||||
Sbjct: 1013 gcagataaagcagaagccgaagctgaagctgcccatatttttgcaaaagcggcgatgaaa 1072
Query: 1055 gctttgaagt 1064
||| ||||||
Sbjct: 1073 gctgtgaagt 1082
Score = 56.0 bits (28), Expect = 8e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 715 tggaacattagttaagataaagcacaagtacaggttttct 754
||||||||||||||||| ||||||||| |||||| |||||
Sbjct: 739 tggaacattagttaagaaaaagcacaaatacaggatttct 778
Score = 50.1 bits (25), Expect = 5e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 636 tgtatatagaggagaatttcaagactccaccgaatatgaaa 676
|||||||||||||||||||||||| | |||| ||||||||
Sbjct: 660 tgtatatagaggagaatttcaagatgcaaccggatatgaaa 700
Score = 34.2 bits (17), Expect = 3.1
Identities = 32/37 (86%)
Strand = Plus / Plus
Query: 446 acagctcttaccattgtggctttgactaatgatgatg 482
|||||| ||||||||||| |||| |||||| |||||
Sbjct: 479 acagctattaccattgtgtctttagctaatggtgatg 515
>At1g49950.3 68414.m05604 DNA-binding protein, putative contains similarity to
DNA-binding protein PcMYB1 [Petroselinum crispum]
gi|2224899|gb|AAB61699
Length = 1481
Score = 58.0 bits (29), Expect = 2e-07
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 326 aatgttgatcttaaggacaaatggagaaa 354
|||||||||||||||||||||||||||||
Sbjct: 439 aatgttgatcttaaggacaaatggagaaa 467
Score = 34.2 bits (17), Expect = 3.1
Identities = 71/89 (79%)
Strand = Plus / Plus
Query: 941 gcagttgcagaggcagaatttgctatcacagaggctgaacaagcagcaaaagaggcagaa 1000
||||| |||||||||||| ||| || |||||||||| |||| ||||| || || ||
Sbjct: 1048 gcagtagcagaggcagaagctgccatggcagaggctgaggaagctgcaaaggaagcggag 1107
Query: 1001 agagcagaagcagaagctgaagctgctca 1029
||||||||| ||||| ||||| |||||
Sbjct: 1108 gcagcagaagccgaagcagaagcagctca 1136
>At1g49950.2 68414.m05603 DNA-binding protein, putative contains similarity to
DNA-binding protein PcMYB1 [Petroselinum crispum]
gi|2224899|gb|AAB61699
Length = 1383
Score = 58.0 bits (29), Expect = 2e-07
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 326 aatgttgatcttaaggacaaatggagaaa 354
|||||||||||||||||||||||||||||
Sbjct: 280 aatgttgatcttaaggacaaatggagaaa 308
Score = 34.2 bits (17), Expect = 3.1
Identities = 71/89 (79%)
Strand = Plus / Plus
Query: 941 gcagttgcagaggcagaatttgctatcacagaggctgaacaagcagcaaaagaggcagaa 1000
||||| |||||||||||| ||| || |||||||||| |||| ||||| || || ||
Sbjct: 889 gcagtagcagaggcagaagctgccatggcagaggctgaggaagctgcaaaggaagcggag 948
Query: 1001 agagcagaagcagaagctgaagctgctca 1029
||||||||| ||||| ||||| |||||
Sbjct: 949 gcagcagaagccgaagcagaagcagctca 977
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,376
Number of Sequences: 29161
Number of extensions: 76376
Number of successful extensions: 5771
Number of sequences better than 10.0: 125
length of query: 1421
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1403
effective length of database: 43,533,334
effective search space: 61077267602
effective search space used: 61077267602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)