BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AY077668.F
(900 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67580.2 68418.m08522 myb family transcription factor co... 1784 0.0
At5g67580.1 68418.m08521 myb family transcription factor co... 1784 0.0
At3g49850.1 68416.m05450 myb family transcription factor co... 204 9e-52
At1g49950.3 68414.m05604 DNA-binding protein, putative cont... 58 1e-07
At1g49950.2 68414.m05603 DNA-binding protein, putative cont... 58 1e-07
>At5g67580.2 68418.m08522 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 1720
Score = 1784 bits (900), Expect = 0.0
Identities = 900/900 (100%)
Strand = Plus / Plus
Query: 1 atgggtgcaccaaagcagaagtggacaccggaagaagaagcagctcttaaagctggagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 atgggtgcaccaaagcagaagtggacaccggaagaagaagcagctcttaaagctggagtt 172
Query: 61 cttaagcatgggactgggaagtggcgtaccatactctcggatactgagtttagtttaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 cttaagcatgggactgggaagtggcgtaccatactctcggatactgagtttagtttaatc 232
Query: 121 cttaagtctcgctctaatgttgatcttaaggacaaatggagaaatataagcgtgacagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 cttaagtctcgctctaatgttgatcttaaggacaaatggagaaatataagcgtgacagct 292
Query: 181 ttatggggttcaaggaagaaggctaaacttgcgcttaagaggactccaccaggtactaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttatggggttcaaggaagaaggctaaacttgcgcttaagaggactccaccaggtactaaa 352
Query: 241 caggatgataacaacacagctcttaccattgtggctttgactaatgatgatgaacgtgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 caggatgataacaacacagctcttaccattgtggctttgactaatgatgatgaacgtgca 412
Query: 301 aaaccaacttcccccggaggttctggtggtggatcaccacgcacttgtgcttctaagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aaaccaacttcccccggaggttctggtggtggatcaccacgcacttgtgcttctaagaga 472
Query: 361 tcaattacaagtttggataagatcatctttgaggcaattaccaacttgagggaactacgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcaattacaagtttggataagatcatctttgaggcaattaccaacttgagggaactacgc 532
Query: 421 ggttctgacagaacatcaatctttctgtatatagaggagaatttcaagactccaccgaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggttctgacagaacatcaatctttctgtatatagaggagaatttcaagactccaccgaat 592
Query: 481 atgaaaaggcatgtcgcagtacgattaaagcatttatcatcgaatggaacattagttaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atgaaaaggcatgtcgcagtacgattaaagcatttatcatcgaatggaacattagttaag 652
Query: 541 ataaagcacaagtacaggttttcttctaattttattcccgcaggtgcaagacagaaggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ataaagcacaagtacaggttttcttctaattttattcccgcaggtgcaagacagaaggct 712
Query: 601 cctcaactctttctggaaggaaacaacaagaaagacccaacaaaacccgaggagaacggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cctcaactctttctggaaggaaacaacaagaaagacccaacaaaacccgaggagaacggt 772
Query: 661 gccaacagtctcactaaattccgagtagacggtgaattatatatgataaaaggcatgaca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gccaacagtctcactaaattccgagtagacggtgaattatatatgataaaaggcatgaca 832
Query: 721 gctcaagaagctgcagaggctgcagcaagagcagttgcagaggcagaatttgctatcaca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gctcaagaagctgcagaggctgcagcaagagcagttgcagaggcagaatttgctatcaca 892
Query: 781 gaggctgaacaagcagcaaaagaggcagaaagagcagaagcagaagctgaagctgctcag 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 gaggctgaacaagcagcaaaagaggcagaaagagcagaagcagaagctgaagctgctcag 952
Query: 841 atatttgcaaaggcagccatgaaagctttgaagttcaggatccgtaatcatccttggtga 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 atatttgcaaaggcagccatgaaagctttgaagttcaggatccgtaatcatccttggtga 1012
>At5g67580.1 68418.m08521 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 1799
Score = 1784 bits (900), Expect = 0.0
Identities = 900/900 (100%)
Strand = Plus / Plus
Query: 1 atgggtgcaccaaagcagaagtggacaccggaagaagaagcagctcttaaagctggagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atgggtgcaccaaagcagaagtggacaccggaagaagaagcagctcttaaagctggagtt 251
Query: 61 cttaagcatgggactgggaagtggcgtaccatactctcggatactgagtttagtttaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cttaagcatgggactgggaagtggcgtaccatactctcggatactgagtttagtttaatc 311
Query: 121 cttaagtctcgctctaatgttgatcttaaggacaaatggagaaatataagcgtgacagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cttaagtctcgctctaatgttgatcttaaggacaaatggagaaatataagcgtgacagct 371
Query: 181 ttatggggttcaaggaagaaggctaaacttgcgcttaagaggactccaccaggtactaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttatggggttcaaggaagaaggctaaacttgcgcttaagaggactccaccaggtactaaa 431
Query: 241 caggatgataacaacacagctcttaccattgtggctttgactaatgatgatgaacgtgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 caggatgataacaacacagctcttaccattgtggctttgactaatgatgatgaacgtgca 491
Query: 301 aaaccaacttcccccggaggttctggtggtggatcaccacgcacttgtgcttctaagaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aaaccaacttcccccggaggttctggtggtggatcaccacgcacttgtgcttctaagaga 551
Query: 361 tcaattacaagtttggataagatcatctttgaggcaattaccaacttgagggaactacgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tcaattacaagtttggataagatcatctttgaggcaattaccaacttgagggaactacgc 611
Query: 421 ggttctgacagaacatcaatctttctgtatatagaggagaatttcaagactccaccgaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggttctgacagaacatcaatctttctgtatatagaggagaatttcaagactccaccgaat 671
Query: 481 atgaaaaggcatgtcgcagtacgattaaagcatttatcatcgaatggaacattagttaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 atgaaaaggcatgtcgcagtacgattaaagcatttatcatcgaatggaacattagttaag 731
Query: 541 ataaagcacaagtacaggttttcttctaattttattcccgcaggtgcaagacagaaggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ataaagcacaagtacaggttttcttctaattttattcccgcaggtgcaagacagaaggct 791
Query: 601 cctcaactctttctggaaggaaacaacaagaaagacccaacaaaacccgaggagaacggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 cctcaactctttctggaaggaaacaacaagaaagacccaacaaaacccgaggagaacggt 851
Query: 661 gccaacagtctcactaaattccgagtagacggtgaattatatatgataaaaggcatgaca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gccaacagtctcactaaattccgagtagacggtgaattatatatgataaaaggcatgaca 911
Query: 721 gctcaagaagctgcagaggctgcagcaagagcagttgcagaggcagaatttgctatcaca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 gctcaagaagctgcagaggctgcagcaagagcagttgcagaggcagaatttgctatcaca 971
Query: 781 gaggctgaacaagcagcaaaagaggcagaaagagcagaagcagaagctgaagctgctcag 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 gaggctgaacaagcagcaaaagaggcagaaagagcagaagcagaagctgaagctgctcag 1031
Query: 841 atatttgcaaaggcagccatgaaagctttgaagttcaggatccgtaatcatccttggtga 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 atatttgcaaaggcagccatgaaagctttgaagttcaggatccgtaatcatccttggtga 1091
>At3g49850.1 68416.m05450 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 1373
Score = 204 bits (103), Expect = 9e-52
Identities = 196/227 (86%)
Strand = Plus / Plus
Query: 1 atgggtgcaccaaagcagaagtggacaccggaagaagaagcagctcttaaagctggagtt 60
||||| || ||||||| |||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 221 atgggagctccaaagctgaagtggacaccagaagaagaaacagctcttaaagctggagta 280
Query: 61 cttaagcatgggactgggaagtggcgtaccatactctcggatactgagtttagtttaatc 120
||||| ||||| ||||| || ||||||||||| ||||| ||| ||| || ||| |||
Sbjct: 281 cttaaacatggaactggaaaatggcgtaccattctctcagatcctgtgtatagcacaatt 340
Query: 121 cttaagtctcgctctaatgttgatcttaaggacaaatggagaaatataagcgtgacagct 180
|| |||||||| |||||||| ||||| ||||||||||||||||||||||| || ||||||
Sbjct: 341 ctgaagtctcgttctaatgtggatctcaaggacaaatggagaaatataagtgtaacagct 400
Query: 181 ttatggggttcaaggaagaaggctaaacttgcgcttaagaggactcc 227
|||||||| || |||||||||||||| ||||| ||||| || |||||
Sbjct: 401 ttatggggatctaggaagaaggctaagcttgctcttaaaagaactcc 447
Score = 107 bits (54), Expect = 2e-22
Identities = 111/130 (85%)
Strand = Plus / Plus
Query: 745 gcaagagcagttgcagaggcagaatttgctatcacagaggctgaacaagcagcaaaagag 804
|||||||| || ||||| ||||||||||| || |||| |||||| ||||||||| ||||
Sbjct: 953 gcaagagctgtggcagaagcagaatttgcaatggcagaagctgaagaagcagcaagagag 1012
Query: 805 gcagaaagagcagaagcagaagctgaagctgctcagatatttgcaaaggcagccatgaaa 864
||||| | ||||||||| |||||||||||||| || || |||||||| || || ||||||
Sbjct: 1013 gcagataaagcagaagccgaagctgaagctgcccatatttttgcaaaagcggcgatgaaa 1072
Query: 865 gctttgaagt 874
||| ||||||
Sbjct: 1073 gctgtgaagt 1082
Score = 56.0 bits (28), Expect = 5e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 525 tggaacattagttaagataaagcacaagtacaggttttct 564
||||||||||||||||| ||||||||| |||||| |||||
Sbjct: 739 tggaacattagttaagaaaaagcacaaatacaggatttct 778
Score = 50.1 bits (25), Expect = 3e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 446 tgtatatagaggagaatttcaagactccaccgaatatgaaa 486
|||||||||||||||||||||||| | |||| ||||||||
Sbjct: 660 tgtatatagaggagaatttcaagatgcaaccggatatgaaa 700
Score = 34.2 bits (17), Expect = 2.0
Identities = 32/37 (86%)
Strand = Plus / Plus
Query: 256 acagctcttaccattgtggctttgactaatgatgatg 292
|||||| ||||||||||| |||| |||||| |||||
Sbjct: 479 acagctattaccattgtgtctttagctaatggtgatg 515
>At1g49950.3 68414.m05604 DNA-binding protein, putative contains similarity to
DNA-binding protein PcMYB1 [Petroselinum crispum]
gi|2224899|gb|AAB61699
Length = 1481
Score = 58.0 bits (29), Expect = 1e-07
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 136 aatgttgatcttaaggacaaatggagaaa 164
|||||||||||||||||||||||||||||
Sbjct: 439 aatgttgatcttaaggacaaatggagaaa 467
Score = 34.2 bits (17), Expect = 2.0
Identities = 71/89 (79%)
Strand = Plus / Plus
Query: 751 gcagttgcagaggcagaatttgctatcacagaggctgaacaagcagcaaaagaggcagaa 810
||||| |||||||||||| ||| || |||||||||| |||| ||||| || || ||
Sbjct: 1048 gcagtagcagaggcagaagctgccatggcagaggctgaggaagctgcaaaggaagcggag 1107
Query: 811 agagcagaagcagaagctgaagctgctca 839
||||||||| ||||| ||||| |||||
Sbjct: 1108 gcagcagaagccgaagcagaagcagctca 1136
>At1g49950.2 68414.m05603 DNA-binding protein, putative contains similarity to
DNA-binding protein PcMYB1 [Petroselinum crispum]
gi|2224899|gb|AAB61699
Length = 1383
Score = 58.0 bits (29), Expect = 1e-07
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 136 aatgttgatcttaaggacaaatggagaaa 164
|||||||||||||||||||||||||||||
Sbjct: 280 aatgttgatcttaaggacaaatggagaaa 308
Score = 34.2 bits (17), Expect = 2.0
Identities = 71/89 (79%)
Strand = Plus / Plus
Query: 751 gcagttgcagaggcagaatttgctatcacagaggctgaacaagcagcaaaagaggcagaa 810
||||| |||||||||||| ||| || |||||||||| |||| ||||| || || ||
Sbjct: 889 gcagtagcagaggcagaagctgccatggcagaggctgaggaagctgcaaaggaagcggag 948
Query: 811 agagcagaagcagaagctgaagctgctca 839
||||||||| ||||| ||||| |||||
Sbjct: 949 gcagcagaagccgaagcagaagcagctca 977
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,598
Number of Sequences: 29161
Number of extensions: 34598
Number of successful extensions: 968
Number of sequences better than 10.0: 105
length of query: 900
length of database: 44,058,232
effective HSP length: 18
effective length of query: 882
effective length of database: 43,533,334
effective search space: 38396400588
effective search space used: 38396400588
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)