BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18074.C1
(1864 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-con... 3679 0.0
At3g06080.1 68416.m00696 expressed protein identical to unk... 38 0.26
At3g06080.2 68416.m00695 expressed protein identical to unk... 38 0.26
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane ... 38 0.26
At5g61840.1 68418.m07759 exostosin family protein contains ... 36 1.0
>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing protein
contains Pfam profile PF01535: PPR repeat
Length = 1863
Score = 3679 bits (1856), Expect = 0.0
Identities = 1863/1864 (99%), Gaps = 1/1864 (0%)
Strand = Plus / Plus
Query: 1 acttgcactatcctcctcttcgcaacaatggatgcttcggtggtgagattttcccaatcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acttgcactatcctcctcttcgcaacaatggatgcttcggtggtgagattttcccaatcg 60
Query: 61 ccggcaagagtgccaccggaatttgaaccagatatggagaagattaaacggaggctgctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccggcaagagtgccaccggaatttgaaccagatatggagaagattaaacggaggctgctc 120
Query: 121 aagtacggtgttgatccaacccccaaaatcctgaacaatctccgaaagaaagaaattcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagtacggtgttgatccaacccccaaaatcctgaacaatctccgaaagaaagaaattcaa 180
Query: 181 aaacacaaccgtagaaccaagcgcgaaaccgagtccgaggcggaggtgtatacggaggcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaacacaaccgtagaaccaagcgcgaaaccgagtccgaggcggaggtgtatacggaggcg 240
Query: 241 cagaaacaatcaatggaggaagaagctcgttttcaaacccttagacgggaatacaagcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagaaacaatcaatggaggaagaagctcgttttcaaacccttagacgggaatacaagcaa 300
Query: 301 ttcacgaggtcaatttctggaaaaaggggcggcgatgttggtttgatggttgggaatcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcacgaggtcaatttctggaaaaaggggcggcgatgttggtttgatggttgggaatcca 360
Query: 361 tgggaaggaatcgagagagtgaagctgaaggagctcgttagtggcgttcggagagaagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgggaaggaatcgagagagtgaagctgaaggagctcgttagtggcgttcggagagaagag 420
Query: 421 gttagtgctggtgaattgaagaaagagaatctaaaagagttgaagaagatacttgagaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttagtgctggtgaattgaagaaagagaatctaaaagagttgaagaagatacttgagaag 480
Query: 481 gatcttcgttgggttctagacgacgacgttgatgtggaagaatttgatttggacaaagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gatcttcgttgggttctagacgacgacgttgatgtggaagaatttgatttggacaaagaa 540
Query: 541 tttgatcctgcgaaacggtggcgtaacgaaggagaagcagtcagagttctcgttgacaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttgatcctgcgaaacggtggcgtaacgaaggagaagcagtcagagttctcgttgacaga 600
Query: 601 ttgagtggtagagaaatcaatgagaagcattggaagttttgtgagaatgatgaatcaatc 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 601 ttgagtggtagagaaatcaatgagaagcattggaagttt-gtgagaatgatgaatcaatc 659
Query: 661 agggcttcagttcactgaagatcagatgcttaagatcgttgatcgattgggacgtaaaca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 agggcttcagttcactgaagatcagatgcttaagatcgttgatcgattgggacgtaaaca 719
Query: 721 gagctggaaacaagcttcagctgttgttcattgggtgtattctgataaaaagcgtaaaca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gagctggaaacaagcttcagctgttgttcattgggtgtattctgataaaaagcgtaaaca 779
Query: 781 tcttaggagcagatttgtttacaccaagcttttgtccgttcttgggtttgcgaggaggcc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tcttaggagcagatttgtttacaccaagcttttgtccgttcttgggtttgcgaggaggcc 839
Query: 841 acaggaagctcttcagatattcaatcagatgcttggtgatcgccagttatatcctgatat 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 acaggaagctcttcagatattcaatcagatgcttggtgatcgccagttatatcctgatat 899
Query: 901 ggcggcgtaccactgtattgctgtaacacttgggcaagcgggtttattgaaggagttgct 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 ggcggcgtaccactgtattgctgtaacacttgggcaagcgggtttattgaaggagttgct 959
Query: 961 taaagtaatcgagcgtatgaggcagaaaccgactaaactaactaagaatttgcggcaaaa 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 taaagtaatcgagcgtatgaggcagaaaccgactaaactaactaagaatttgcggcaaaa 1019
Query: 1021 gaactgggatcctgtgcttgaacctgacttggttgtatacaacgctattcttaacgcttg 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 gaactgggatcctgtgcttgaacctgacttggttgtatacaacgctattcttaacgcttg 1079
Query: 1081 tgttccaacactccaatggaaggctgtttcatgggtatttgtagagttaagaaaaaatgg 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 tgttccaacactccaatggaaggctgtttcatgggtatttgtagagttaagaaaaaatgg 1139
Query: 1141 tttgaggcctaatggagctacatatgggcttgcgatggaggttatgctggagtcagggaa 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 tttgaggcctaatggagctacatatgggcttgcgatggaggttatgctggagtcagggaa 1199
Query: 1201 gtttgatcgtgttcacgatttttttaggaagatgaaaagcagtggcgaagctccaaaagc 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 gtttgatcgtgttcacgatttttttaggaagatgaaaagcagtggcgaagctccaaaagc 1259
Query: 1261 aatcacatacaaggttcttgtccgagctctctggagagaaggcaagatcgaagaagctgt 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 aatcacatacaaggttcttgtccgagctctctggagagaaggcaagatcgaagaagctgt 1319
Query: 1321 tgaagcagtcagagatatggaacaaaagggagttataggaacgggttcagtttactatga 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 tgaagcagtcagagatatggaacaaaagggagttataggaacgggttcagtttactatga 1379
Query: 1381 attggcatgctgtctgtgcaacaacgggcgttggtgcgatgcaatgctcgaagtggggag 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 attggcatgctgtctgtgcaacaacgggcgttggtgcgatgcaatgctcgaagtggggag 1439
Query: 1441 gatgaaaagacttgaaaattgcaggccgctcgagattaccttcacaggactcatagccgc 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 gatgaaaagacttgaaaattgcaggccgctcgagattaccttcacaggactcatagccgc 1499
Query: 1501 ttcattgaacggtggtcatgttgatgattgcatggctatattccaatatatgaaagataa 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1500 ttcattgaacggtggtcatgttgatgattgcatggctatattccaatatatgaaagataa 1559
Query: 1561 atgtgatccgaatataggaactgcgaacatgatgcttaaagtttacggaaggaatgatat 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1560 atgtgatccgaatataggaactgcgaacatgatgcttaaagtttacggaaggaatgatat 1619
Query: 1621 gttttcagaagctaaagaattgtttgaagagattgtcagcagaaaagagactcatttagt 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1620 gttttcagaagctaaagaattgtttgaagagattgtcagcagaaaagagactcatttagt 1679
Query: 1681 tccaaacgagtatacatacagcttcatgcttgaagcttcagctagatcactgcaatggga 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1680 tccaaacgagtatacatacagcttcatgcttgaagcttcagctagatcactgcaatggga 1739
Query: 1741 atactttgaacatgtgtatcaaacgatggttctttctggttaccaaatggatcaaacaaa 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1740 atactttgaacatgtgtatcaaacgatggttctttctggttaccaaatggatcaaacaaa 1799
Query: 1801 acatgcatcaatgctgatagaagcatcaagagccgggaaggtaacaaatctttgtctagt 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1800 acatgcatcaatgctgatagaagcatcaagagccgggaaggtaacaaatctttgtctagt 1859
Query: 1861 ttaa 1864
||||
Sbjct: 1860 ttaa 1863
>At3g06080.1 68416.m00696 expressed protein identical to unknown protein
GB:AAF30301 from [Arabidopsis thaliana]
Length = 2256
Score = 38.2 bits (19), Expect = 0.26
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 450 tctaaaagagttgaagaag 468
|||||||||||||||||||
Sbjct: 1954 tctaaaagagttgaagaag 1972
>At3g06080.2 68416.m00695 expressed protein identical to unknown protein
GB:AAF30301 from [Arabidopsis thaliana]
Length = 2122
Score = 38.2 bits (19), Expect = 0.26
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 450 tctaaaagagttgaagaag 468
|||||||||||||||||||
Sbjct: 1820 tctaaaagagttgaagaag 1838
>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein kinase,
putative
Length = 3222
Score = 38.2 bits (19), Expect = 0.26
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 457 gagttgaagaagatacttg 475
|||||||||||||||||||
Sbjct: 2029 gagttgaagaagatacttg 2011
>At5g61840.1 68418.m07759 exostosin family protein contains Pfam profile:
PF03016 exostosin family ;supported by cDNA
gi|23821293|dbj|AB080693.1|;
Length = 1672
Score = 36.2 bits (18), Expect = 1.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 463 aagaagatacttgagaaggatc 484
|||||||||||| |||||||||
Sbjct: 421 aagaagatacttcagaaggatc 442
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,348
Number of Sequences: 29161
Number of extensions: 66348
Number of successful extensions: 1585
Number of sequences better than 10.0: 50
length of query: 1864
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1846
effective length of database: 43,533,334
effective search space: 80362534564
effective search space used: 80362534564
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)