BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18073.C1
(1052 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67560.1 68418.m08519 ADP-ribosylation factor, putative ... 2079 0.0
At3g49870.1 68416.m05452 ADP-ribosylation factor, putative ... 650 0.0
At3g49860.1 68416.m05451 ADP-ribosylation factor, putative ... 361 8e-99
At5g37680.1 68418.m04538 ADP-ribosylation factor, putative ... 115 8e-25
At5g14990.1 68418.m01758 hypothetical protein 42 0.009
>At5g67560.1 68418.m08519 ADP-ribosylation factor, putative identical to
GP:15450888 ADP-ribosylation factor-like protein
{Arabidopsis thaliana]
Length = 1051
Score = 2079 bits (1049), Expect = 0.0
Identities = 1049/1049 (100%)
Strand = Plus / Plus
Query: 2 aactttaattcgccggctctcttgccgtgttttcgattttgacaaacgaaaaaaaaatct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aactttaattcgccggctctcttgccgtgttttcgattttgacaaacgaaaaaaaaatct 60
Query: 62 tcaatgagataacaataatatcagcagcggaacaaggattgagaaaaggaacctttccct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcaatgagataacaataatatcagcagcggaacaaggattgagaaaaggaacctttccct 120
Query: 122 tttaataagccgatatagatccttggaggagaatttgtagcagaccgatctctgtctgtt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttaataagccgatatagatccttggaggagaatttgtagcagaccgatctctgtctgtt 180
Query: 182 gtctctgtttctacgaatctctgtgtttgtcggaaatcgtaaattatgggtttgtgggat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtctctgtttctacgaatctctgtgtttgtcggaaatcgtaaattatgggtttgtgggat 240
Query: 242 gctcttctcaattggcttcgcagcctcttcttcaagcaagaaatggagctttcattgata 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gctcttctcaattggcttcgcagcctcttcttcaagcaagaaatggagctttcattgata 300
Query: 302 ggacttcaaaatgcaggaaagacatcacttgttaacgttgttgcaaccggtggatacagt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggacttcaaaatgcaggaaagacatcacttgttaacgttgttgcaaccggtggatacagt 360
Query: 362 gaagacatgatccctacggttggtttcaacatgaggaaagtgacaaaaggaagtgtcacg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaagacatgatccctacggttggtttcaacatgaggaaagtgacaaaaggaagtgtcacg 420
Query: 422 atcaagctttgggatctcggtggtcaacctaggttccgcagcatgtgggaacgttactgc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atcaagctttgggatctcggtggtcaacctaggttccgcagcatgtgggaacgttactgc 480
Query: 482 cgttctgtttccgcgattgtgtatgtagttgatgctgctgatcctgataacctcagtgtc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cgttctgtttccgcgattgtgtatgtagttgatgctgctgatcctgataacctcagtgtc 540
Query: 542 tcgaagagtgaactccatgatttgttgagcaagacgtcgcttaatggtatccctctccta 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcgaagagtgaactccatgatttgttgagcaagacgtcgcttaatggtatccctctccta 600
Query: 602 gtccttgggaacaaaatcgacaagcctggagctttgtccaaagaagccctaaccgatgaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtccttgggaacaaaatcgacaagcctggagctttgtccaaagaagccctaaccgatgaa 660
Query: 662 atgggtctcaagtcactgacagatagagaagtctgttgcttcatgatatcttgcaagaac 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atgggtctcaagtcactgacagatagagaagtctgttgcttcatgatatcttgcaagaac 720
Query: 722 tctaccaacatcgatcaagtcattgattggcttgtaaagcactccaaatcatcgaattaa 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tctaccaacatcgatcaagtcattgattggcttgtaaagcactccaaatcatcgaattaa 780
Query: 782 actttaccccaaaaggagagaagtcaactctctgcagttgtcgatctttcttgtgttttt 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 actttaccccaaaaggagagaagtcaactctctgcagttgtcgatctttcttgtgttttt 840
Query: 842 ggtcatttgatgatgatgatggtgattgtggaagaagacacagcttttttcttttatcct 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ggtcatttgatgatgatgatggtgattgtggaagaagacacagcttttttcttttatcct 900
Query: 902 gtgaaaaacaagatttgtctatgttctctgtctgattctttatctgtctttcttctgcgt 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gtgaaaaacaagatttgtctatgttctctgtctgattctttatctgtctttcttctgcgt 960
Query: 962 atgtggctgtgttctctgtatattagatttgattggtgttccctcttcttaaagccatga 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 atgtggctgtgttctctgtatattagatttgattggtgttccctcttcttaaagccatga 1020
Query: 1022 tgagatcacttccttcggggtcagctttt 1050
|||||||||||||||||||||||||||||
Sbjct: 1021 tgagatcacttccttcggggtcagctttt 1049
>At3g49870.1 68416.m05452 ADP-ribosylation factor, putative similar to
ADP-ribosylation factor-like protein 1 (SP:P40616) [Homo
sapiens]; ARF3 ADP-RIBOSYLATION FACTOR,GP:453191
Arabidopsis thaliana; contains domain PF00025:
ADP-ribosylation factor family
Length = 897
Score = 650 bits (328), Expect = 0.0
Identities = 484/536 (90%)
Strand = Plus / Plus
Query: 227 atgggtttgtgggatgctcttctcaattggcttcgcagcctcttcttcaagcaagaaatg 286
|||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 119 atgggtttgttggaagcttttctcaattggcttcgtagcctcttcttcaagcaagaaatg 178
Query: 287 gagctttcattgataggacttcaaaatgcaggaaagacatcacttgttaacgttgttgca 346
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 179 gagctttctttgataggacttcaaaatgcaggaaagacatcacttgtaaatgttgttgca 238
Query: 347 accggtggatacagtgaagacatgatccctacggttggtttcaacatgaggaaagtgaca 406
|| ||||||||||||||||||||||| |||||||| || || |||||||||||||| |||
Sbjct: 239 actggtggatacagtgaagacatgattcctacggtcgggtttaacatgaggaaagtaaca 298
Query: 407 aaaggaagtgtcacgatcaagctttgggatctcggtggtcaacctaggttccgcagcatg 466
||||||| ||| || ||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 299 aaaggaaatgttacaatcaaactatgggatcttggtggtcaaccaagattccgcagcatg 358
Query: 467 tgggaacgttactgccgttctgtttccgcgattgtgtatgtagttgatgctgctgatcct 526
|||||||||||||| || ||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 359 tgggaacgttactgtcgcgctgtttctgccattgtgtatgtagttgatgctgcagatcct 418
Query: 527 gataacctcagtgtctcgaagagtgaactccatgatttgttgagcaagacgtcgcttaat 586
|| ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 419 gacaacctaagtgtgtcgaaaagtgaactccatgatttgttgagcaagacttcgcttaat 478
Query: 587 ggtatccctctcctagtccttgggaacaaaatcgacaagcctggagctttgtccaaagaa 646
||||||||||| || || ||||||||||| || ||||| ||||||||| |||||||||||
Sbjct: 479 ggtatccctcttctcgttcttgggaacaagattgacaaacctggagctctgtccaaagaa 538
Query: 647 gccctaaccgatgaaatgggtctcaagtcactgacagatagagaagtctgttgcttcatg 706
||| |||| || |||||||| || | ||||| ||||||||||||||||| || ||||||
Sbjct: 539 gccttaacagacgaaatgggacttacatcacttacagatagagaagtctgctgtttcatg 598
Query: 707 atatcttgcaagaactctaccaacatcgatcaagtcattgattggcttgtaaagca 762
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 599 atatcatgcaagaactctaccaacattgatcaagtcattgattggctcgtaaagca 654
>At3g49860.1 68416.m05451 ADP-ribosylation factor, putative similar to
GTP-binding ADP-ribosylation factor homolog 1 protein
(SP:P25160) [Drosophila melanogaster] and various
ADP-RIBOSYLATION FACTOR (ARF) - like proteins; contains
PF00025: ADP-ribosylation factor family domain
Length = 637
Score = 361 bits (182), Expect = 8e-99
Identities = 422/502 (84%)
Strand = Plus / Plus
Query: 284 atggagctttcattgataggacttcaaaatgcaggaaagacatcacttgttaacgttgtt 343
||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 1 atggagctttctttggtaggacttcaaaattcaggaaagacatcacttgttaatgttgtt 60
Query: 344 gcaaccggtggatacagtgaagacatgatccctacggttggtttcaacatgaggaaagtg 403
||||| |||| |||||||||||||||||| |||||||| || || |||||||||||||||
Sbjct: 61 gcaactggtgaatacagtgaagacatgattcctacggtcgggtttaacatgaggaaagtg 120
Query: 404 acaaaaggaagtgtcacgatcaagctttgggatctcggtggtcaacctaggttccgcagc 463
||||||| || ||| | |||| || |||||||| ||||||||||| || |||||| ||
Sbjct: 121 acaaaagaaaatgttgcaatcagactatgggatcttggtggtcaaccaagattccgctgc 180
Query: 464 atgtgggaacgttactgccgttctgtttccgcgattgtgtatgtagttgatgctgctgat 523
||||||||||||||||| || ||||||| ||||||||| |||||||||||||| |||
Sbjct: 181 atgtgggaacgttactgtcgcgctgtttctatgattgtgtacgtagttgatgctgcagat 240
Query: 524 cctgataacctcagtgtctcgaagagtgaactccatgatttgttgagcaagacgtcgctt 583
|||| ||| | |||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct: 241 actgaaaacttgagtgtctcgagaagtgaactccatgatttgttgagcaatgcttcgctt 300
Query: 584 aatggtatccctctcctagtccttgggaacaaaatcgacaagcctggagctttgtccaaa 643
| |||||| ||||| | || ||||||||||| || |||| | ||||||| | ||||||
Sbjct: 301 attggtattcctcttttggttcttgggaacaagattgacatacatggagctctttccaaa 360
Query: 644 gaagccctaaccgatgaaatgggtctcaagtcactgacagatagagaagtctgttgcttc 703
|||||| | || || |||||||| || | || | ||| |||||||||||| || ||
Sbjct: 361 gaagccttgacagaagaaatggggcttagttcggttacaagtagagaagtctgctgtctc 420
Query: 704 atgatatcttgcaagaactctaccaacatcgatcaagtcattgattggcttgtaaagcac 763
|||||||| ||||||||| |||||| ||| ||||| ||| ||||||||||||||| |||
Sbjct: 421 atgatatcctgcaagaaccctaccaccattgatcagctcactgattggcttgtaaatcac 480
Query: 764 tccaaatcatcgaattaaactt 785
|| |||||| ||| |||||||
Sbjct: 481 tcaaaatcaaagaactaaactt 502
>At5g37680.1 68418.m04538 ADP-ribosylation factor, putative ADP-ribosylation
factor, Leishmania major, EMBL:LMFP1421 and
ADP-ribosylation factor-like protein 1 (ARL1)
(SP:P40616) Homo sapiens; contains PF00025:
ADP-ribosylation factor family
Length = 886
Score = 115 bits (58), Expect = 8e-25
Identities = 238/298 (79%)
Strand = Plus / Plus
Query: 227 atgggtttgtgggatgctcttctcaattggcttcgcagcctcttcttcaagcaagaaatg 286
|||||| | |||||| | ||||| |||||||| || ||| | || ||||| ||||| |||
Sbjct: 131 atgggtctttgggattcacttcttaattggctccggagcttgtttttcaaacaagagatg 190
Query: 287 gagctttcattgataggacttcaaaatgcaggaaagacatcacttgttaacgttgttgca 346
||||| ||| | | |||||||||||||| || ||||| || ||||| || | ||||
Sbjct: 191 gagctgtcactcgttggacttcaaaatgctgggaagacttctcttgtcaatgccattgct 250
Query: 347 accggtggatacagtgaagacatgatccctacggttggtttcaacatgaggaaagtgaca 406
|| || || ||||||||||| ||||| || || || || || |||||||||||||| |||
Sbjct: 251 actggaggttacagtgaagatatgataccaactgtaggatttaacatgaggaaagttaca 310
Query: 407 aaaggaagtgtcacgatcaagctttgggatctcggtggtcaacctaggttccgcagcatg 466
||||||| ||| || || ||| |||||||||| || || |||| ||||| || | ||||
Sbjct: 311 aaaggaaatgttacaataaagatttgggatcttggagggcaacgaaggtttcgtaccatg 370
Query: 467 tgggaacgttactgccgttctgtttccgcgattgtgtatgtagttgatgctgctgatc 524
|||||||||||||| || ||||||||| ||||| ||||| |||||||||| ||||
Sbjct: 371 tgggaacgttactgtcgcggtgtttccgccattgtatatgtgattgatgctgcagatc 428
>At5g14990.1 68418.m01758 hypothetical protein
Length = 2001
Score = 42.1 bits (21), Expect = 0.009
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 847 tttgatgatgatgatggtgat 867
|||||||||||||||||||||
Sbjct: 1177 tttgatgatgatgatggtgat 1197
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 46,839
Number of Sequences: 29161
Number of extensions: 46839
Number of successful extensions: 2661
Number of sequences better than 10.0: 236
length of query: 1052
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1034
effective length of database: 43,533,334
effective search space: 45013467356
effective search space used: 45013467356
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)