BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AY101528.F
(1401 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67540.1 68418.m08517 glycosyl hydrolase family protein ... 2777 0.0
At5g67540.2 68418.m08516 glycosyl hydrolase family protein ... 2702 0.0
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomeras... 1431 0.0
At3g49880.1 68416.m05453 glycosyl hydrolase family protein ... 484 e-135
At4g36260.1 68417.m05157 zinc finger protein-related simila... 36 0.78
>At5g67540.1 68418.m08517 glycosyl hydrolase family protein 43 contains similarity
to xylanase GI:2645416 from [Caldicellulosiruptor
saccharolyticus]
Length = 1933
Score = 2777 bits (1401), Expect = 0.0
Identities = 1401/1401 (100%)
Strand = Plus / Plus
Query: 1 atgtcgggatattcgtcttctgctggcctccgaggatttgcaggaggttgcagatattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atgtcgggatattcgtcttctgctggcctccgaggatttgcaggaggttgcagatattca 367
Query: 61 ttgcttactattgtttggaccgtcgtcgggtttttcctggtggctcatcttatctctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttgcttactattgtttggaccgtcgtcgggtttttcctggtggctcatcttatctctctg 427
Query: 121 tatagcagaaaagataacaacatccatcaacaagtttcttcagatcagttacaagtagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tatagcagaaaagataacaacatccatcaacaagtttcttcagatcagttacaagtagta 487
Query: 181 catcatcttgctcatcctattgttcgtgaacttataagagttgaagaagaggtcctgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 catcatcttgctcatcctattgttcgtgaacttataagagttgaagaagaggtcctgaga 547
Query: 241 atgccgccacctaggaagcgttctcctcgtactagtaaacggagatcaagaaaaccgatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atgccgccacctaggaagcgttctcctcgtactagtaaacggagatcaagaaaaccgatc 607
Query: 301 cctctcgttgaggagtttcttgacgacaagtcaccaattcgacatcttttctttcccggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cctctcgttgaggagtttcttgacgacaagtcaccaattcgacatcttttctttcccggt 667
Query: 361 atcaaaaccgccgcttttggtcccaccaaggatatgggaaacgagacatcgtattacttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atcaaaaccgccgcttttggtcccaccaaggatatgggaaacgagacatcgtattacttc 727
Query: 421 cccgggaaaatttggatggacacacaagggaatccaattcaagcacatggcggagggatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cccgggaaaatttggatggacacacaagggaatccaattcaagcacatggcggagggatt 787
Query: 481 ctgcttgacgtgaaatctaacacttactattggtatggagagtataaagatggaccaact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ctgcttgacgtgaaatctaacacttactattggtatggagagtataaagatggaccaact 847
Query: 541 taccatgctcacaagaaaggaccagctagagttgatattattggtgttggttgttactct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 taccatgctcacaagaaaggaccagctagagttgatattattggtgttggttgttactct 907
Query: 601 tcaaaggacttatggacatggaaaaatgaaggcattgtactcggagctgaggaaacaaac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 tcaaaggacttatggacatggaaaaatgaaggcattgtactcggagctgaggaaacaaac 967
Query: 661 aagacccatgatttgcataaatccaatgttcttgaacgacccaaagtgatctacaatgaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 aagacccatgatttgcataaatccaatgttcttgaacgacccaaagtgatctacaatgaa 1027
Query: 721 aagacagaaaagtatgtgatgtggatgcatatcgacgatgcaaactacactaaagcttca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 aagacagaaaagtatgtgatgtggatgcatatcgacgatgcaaactacactaaagcttca 1087
Query: 781 gttggtgtggccattagcaatagcccgacaggtcctttcgagtatctatacagtaaacgt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 gttggtgtggccattagcaatagcccgacaggtcctttcgagtatctatacagtaaacgt 1147
Query: 841 ccacacgggttcgatagtcgggacatgactgtcttcaaagacgacgatggtgttgcttac 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1148 ccacacgggttcgatagtcgggacatgactgtcttcaaagacgacgatggtgttgcttac 1207
Query: 901 ctgatatattcgtctgaagtcaatagtgtgcttcatattggacccttgacggaagattac 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1208 ctgatatattcgtctgaagtcaatagtgtgcttcatattggacccttgacggaagattac 1267
Query: 961 ctcgatgtgacaccggttatgaagagagtaatggtgggacaacacagggaagctccagct 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1268 ctcgatgtgacaccggttatgaagagagtaatggtgggacaacacagggaagctccagct 1327
Query: 1021 atcttcaagcatcagaatatttattacatggtcacttcctggtgcactggttgggcacca 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1328 atcttcaagcatcagaatatttattacatggtcacttcctggtgcactggttgggcacca 1387
Query: 1081 aatgaagccttggctcatgcggctgaatctataatgggtccatgggagaaattggggaac 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1388 aatgaagccttggctcatgcggctgaatctataatgggtccatgggagaaattggggaac 1447
Query: 1141 ccgtgtatcggtggtaacaaagttttccggttaacaacattctttgcgcagagcacttat 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1448 ccgtgtatcggtggtaacaaagttttccggttaacaacattctttgcgcagagcacttat 1507
Query: 1201 gtgattcctttacctggtgttcccggtgcgtttatattcatggcagataggtggaacccg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1508 gtgattcctttacctggtgttcccggtgcgtttatattcatggcagataggtggaacccg 1567
Query: 1261 gctgatttgcgggattccagatacgtgtggttaccgttagttataggtggacctgctgac 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1568 gctgatttgcgggattccagatacgtgtggttaccgttagttataggtggacctgctgac 1627
Query: 1321 cagcctttggagttcaacttcgggttcccatcgtggtccagagtgtccatctactggcac 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1628 cagcctttggagttcaacttcgggttcccatcgtggtccagagtgtccatctactggcac 1687
Query: 1381 agtaaatggcggctgccttaa 1401
|||||||||||||||||||||
Sbjct: 1688 agtaaatggcggctgccttaa 1708
>At5g67540.2 68418.m08516 glycosyl hydrolase family protein 43 contains similarity
to xylanase GI:2645416 from [Caldicellulosiruptor
saccharolyticus]
Length = 2016
Score = 2702 bits (1363), Expect = 0.0
Identities = 1363/1363 (100%)
Strand = Plus / Plus
Query: 39 tgcaggaggttgcagatattcattgcttactattgtttggaccgtcgtcgggtttttcct 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgcaggaggttgcagatattcattgcttactattgtttggaccgtcgtcgggtttttcct 488
Query: 99 ggtggctcatcttatctctctgtatagcagaaaagataacaacatccatcaacaagtttc 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggtggctcatcttatctctctgtatagcagaaaagataacaacatccatcaacaagtttc 548
Query: 159 ttcagatcagttacaagtagtacatcatcttgctcatcctattgttcgtgaacttataag 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttcagatcagttacaagtagtacatcatcttgctcatcctattgttcgtgaacttataag 608
Query: 219 agttgaagaagaggtcctgagaatgccgccacctaggaagcgttctcctcgtactagtaa 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 agttgaagaagaggtcctgagaatgccgccacctaggaagcgttctcctcgtactagtaa 668
Query: 279 acggagatcaagaaaaccgatccctctcgttgaggagtttcttgacgacaagtcaccaat 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 acggagatcaagaaaaccgatccctctcgttgaggagtttcttgacgacaagtcaccaat 728
Query: 339 tcgacatcttttctttcccggtatcaaaaccgccgcttttggtcccaccaaggatatggg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tcgacatcttttctttcccggtatcaaaaccgccgcttttggtcccaccaaggatatggg 788
Query: 399 aaacgagacatcgtattacttccccgggaaaatttggatggacacacaagggaatccaat 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aaacgagacatcgtattacttccccgggaaaatttggatggacacacaagggaatccaat 848
Query: 459 tcaagcacatggcggagggattctgcttgacgtgaaatctaacacttactattggtatgg 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tcaagcacatggcggagggattctgcttgacgtgaaatctaacacttactattggtatgg 908
Query: 519 agagtataaagatggaccaacttaccatgctcacaagaaaggaccagctagagttgatat 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 agagtataaagatggaccaacttaccatgctcacaagaaaggaccagctagagttgatat 968
Query: 579 tattggtgttggttgttactcttcaaaggacttatggacatggaaaaatgaaggcattgt 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 tattggtgttggttgttactcttcaaaggacttatggacatggaaaaatgaaggcattgt 1028
Query: 639 actcggagctgaggaaacaaacaagacccatgatttgcataaatccaatgttcttgaacg 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 actcggagctgaggaaacaaacaagacccatgatttgcataaatccaatgttcttgaacg 1088
Query: 699 acccaaagtgatctacaatgaaaagacagaaaagtatgtgatgtggatgcatatcgacga 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 acccaaagtgatctacaatgaaaagacagaaaagtatgtgatgtggatgcatatcgacga 1148
Query: 759 tgcaaactacactaaagcttcagttggtgtggccattagcaatagcccgacaggtccttt 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 tgcaaactacactaaagcttcagttggtgtggccattagcaatagcccgacaggtccttt 1208
Query: 819 cgagtatctatacagtaaacgtccacacgggttcgatagtcgggacatgactgtcttcaa 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 cgagtatctatacagtaaacgtccacacgggttcgatagtcgggacatgactgtcttcaa 1268
Query: 879 agacgacgatggtgttgcttacctgatatattcgtctgaagtcaatagtgtgcttcatat 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 agacgacgatggtgttgcttacctgatatattcgtctgaagtcaatagtgtgcttcatat 1328
Query: 939 tggacccttgacggaagattacctcgatgtgacaccggttatgaagagagtaatggtggg 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 tggacccttgacggaagattacctcgatgtgacaccggttatgaagagagtaatggtggg 1388
Query: 999 acaacacagggaagctccagctatcttcaagcatcagaatatttattacatggtcacttc 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 acaacacagggaagctccagctatcttcaagcatcagaatatttattacatggtcacttc 1448
Query: 1059 ctggtgcactggttgggcaccaaatgaagccttggctcatgcggctgaatctataatggg 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1449 ctggtgcactggttgggcaccaaatgaagccttggctcatgcggctgaatctataatggg 1508
Query: 1119 tccatgggagaaattggggaacccgtgtatcggtggtaacaaagttttccggttaacaac 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1509 tccatgggagaaattggggaacccgtgtatcggtggtaacaaagttttccggttaacaac 1568
Query: 1179 attctttgcgcagagcacttatgtgattcctttacctggtgttcccggtgcgtttatatt 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1569 attctttgcgcagagcacttatgtgattcctttacctggtgttcccggtgcgtttatatt 1628
Query: 1239 catggcagataggtggaacccggctgatttgcgggattccagatacgtgtggttaccgtt 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1629 catggcagataggtggaacccggctgatttgcgggattccagatacgtgtggttaccgtt 1688
Query: 1299 agttataggtggacctgctgaccagcctttggagttcaacttcgggttcccatcgtggtc 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1689 agttataggtggacctgctgaccagcctttggagttcaacttcgggttcccatcgtggtc 1748
Query: 1359 cagagtgtccatctactggcacagtaaatggcggctgccttaa 1401
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1749 cagagtgtccatctactggcacagtaaatggcggctgccttaa 1791
Score = 85.7 bits (43), Expect = 9e-16
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 1 atgtcgggatattcgtcttctgctggcctccgaggatttgcag 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atgtcgggatattcgtcttctgctggcctccgaggatttgcag 350
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyclophilin-type
family protein contains Pfam domain, PF00160:
peptidyl-prolyl cis-trans isomerase, cyclophilin-type
Length = 2962
Score = 1431 bits (722), Expect = 0.0
Identities = 722/722 (100%)
Strand = Plus / Minus
Query: 680 aatccaatgttcttgaacgacccaaagtgatctacaatgaaaagacagaaaagtatgtga 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 aatccaatgttcttgaacgacccaaagtgatctacaatgaaaagacagaaaagtatgtga 2903
Query: 740 tgtggatgcatatcgacgatgcaaactacactaaagcttcagttggtgtggccattagca 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 tgtggatgcatatcgacgatgcaaactacactaaagcttcagttggtgtggccattagca 2843
Query: 800 atagcccgacaggtcctttcgagtatctatacagtaaacgtccacacgggttcgatagtc 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2842 atagcccgacaggtcctttcgagtatctatacagtaaacgtccacacgggttcgatagtc 2783
Query: 860 gggacatgactgtcttcaaagacgacgatggtgttgcttacctgatatattcgtctgaag 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 gggacatgactgtcttcaaagacgacgatggtgttgcttacctgatatattcgtctgaag 2723
Query: 920 tcaatagtgtgcttcatattggacccttgacggaagattacctcgatgtgacaccggtta 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2722 tcaatagtgtgcttcatattggacccttgacggaagattacctcgatgtgacaccggtta 2663
Query: 980 tgaagagagtaatggtgggacaacacagggaagctccagctatcttcaagcatcagaata 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2662 tgaagagagtaatggtgggacaacacagggaagctccagctatcttcaagcatcagaata 2603
Query: 1040 tttattacatggtcacttcctggtgcactggttgggcaccaaatgaagccttggctcatg 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2602 tttattacatggtcacttcctggtgcactggttgggcaccaaatgaagccttggctcatg 2543
Query: 1100 cggctgaatctataatgggtccatgggagaaattggggaacccgtgtatcggtggtaaca 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2542 cggctgaatctataatgggtccatgggagaaattggggaacccgtgtatcggtggtaaca 2483
Query: 1160 aagttttccggttaacaacattctttgcgcagagcacttatgtgattcctttacctggtg 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2482 aagttttccggttaacaacattctttgcgcagagcacttatgtgattcctttacctggtg 2423
Query: 1220 ttcccggtgcgtttatattcatggcagataggtggaacccggctgatttgcgggattcca 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2422 ttcccggtgcgtttatattcatggcagataggtggaacccggctgatttgcgggattcca 2363
Query: 1280 gatacgtgtggttaccgttagttataggtggacctgctgaccagcctttggagttcaact 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2362 gatacgtgtggttaccgttagttataggtggacctgctgaccagcctttggagttcaact 2303
Query: 1340 tcgggttcccatcgtggtccagagtgtccatctactggcacagtaaatggcggctgcctt 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2302 tcgggttcccatcgtggtccagagtgtccatctactggcacagtaaatggcggctgcctt 2243
Query: 1400 aa 1401
||
Sbjct: 2242 aa 2241
>At3g49880.1 68416.m05453 glycosyl hydrolase family protein 43 contains similarity
to xylanase GI:2645416 from [Caldicellulosiruptor
saccharolyticus]
Length = 2066
Score = 484 bits (244), Expect = e-135
Identities = 724/884 (81%)
Strand = Plus / Plus
Query: 415 tacttccccgggaaaatttggatggacacacaagggaatccaattcaagcacatggcgga 474
|||||||| |||| |||||||| ||||| |||||||||| ||||||||||| || ||
Sbjct: 741 tacttcccggggagaatttggacagacacggaagggaatccgattcaagcacacggtggt 800
Query: 475 gggattctgcttgacgtgaaatctaacacttactattggtatggagagtataaagatgga 534
|| ||| || |||| | | ||| || ||||||||||||||| || ||||||||||||
Sbjct: 801 ggcattttgtttgatgacatatcaaaggtttactattggtatggtgaatataaagatgga 860
Query: 535 ccaacttaccatgctcacaagaaaggaccagctagagttgatattattggtgttggttgt 594
|||||||| | | ||||||||||||| | |||||||||||||| || |||||||| |||
Sbjct: 861 ccaacttatctttctcacaagaaaggtgctgctagagttgatataatcggtgttggatgt 920
Query: 595 tactcttcaaaggacttatggacatggaaaaatgaaggcattgtactcggagctgaggaa 654
||||| || || || ||||||||||||||||| ||||| ||||| | | ||| || |||
Sbjct: 921 tactcgtcgaaagatttatggacatggaaaaacgaaggtgttgtattagcagccgaagaa 980
Query: 655 acaaacaagacccatgatttgcataaatccaatgttcttgaacgacccaaagtgatctac 714
||| | |||| ||||| || || ||||||||||||||||| || || |||||||| |||
Sbjct: 981 acagatgagacacatgacttacacaaatccaatgttcttgagcgtcctaaagtgatatac 1040
Query: 715 aatgaaaagacagaaaagtatgtgatgtggatgcatatcgacgatgcaaactacactaaa 774
||| | | |||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 aattcagatacaggtaagtacgtgatgtggatgcatatcgacgatgcaaactacactaaa 1100
Query: 775 gcttcagttggtgtggccattagcaatagcccgacaggtcctttcgagtatctatacagt 834
||||| |||||||| ||||||||| ||| ||| |||||||| ||||| || |||||||
Sbjct: 1101 gcttcggttggtgtagccattagcgataacccaacaggtccattcgattacttatacagc 1160
Query: 835 aaacgtccacacgggttcgatagtcgggacatgactgtcttcaaagacgacgatggtgtt 894
| | ||||||||||| |||||| | |||||||| |||| ||||||||| ||| ||
Sbjct: 1161 agatcgccacacgggtttgatagtagagacatgacagtctacaaagacgatgataacgta 1220
Query: 895 gcttacctgatatattcgtctgaagtcaatagtgtgcttcatattggacccttgacggaa 954
|| ||| |||||||||| || || | ||| || ||||| ||||| || ||| |||| ||
Sbjct: 1221 gcctacttgatatattcatcagaggacaacagcgtgctgcatatcggtcccctgaccgag 1280
Query: 955 gattacctcgatgtgacaccggttatgaagagagtaatggtgggacaacacagggaagct 1014
||||||||||||||| ||||| ||||||||| | ||||||||||||||||| ||||||
Sbjct: 1281 aattacctcgatgtgaagccggtaatgaagagaatcatggtgggacaacacagagaagct 1340
Query: 1015 ccagctatcttcaagcatcagaatatttattacatggtcacttcctggtgcactggttgg 1074
|| ||||||||||| ||||| || | ||| |||||| |||| || | ||||| || |||
Sbjct: 1341 ccggctatcttcaaacatcaaaacacttactacatgatcacgtctggttgcaccggatgg 1400
Query: 1075 gcaccaaatgaagccttggctcatgcggctgaatctataatgggtccatgggagaaattg 1134
|||||||| ||||| || |||||||| ||||| || ||||||||||| ||||||| |||
Sbjct: 1401 gcaccaaacgaagcattagctcatgccgctgagtcgataatgggtccgtgggagacatta 1460
Query: 1135 gggaacccgtgtatcggtggtaacaaagttttccggttaacaacattctttgcgcagagc 1194
||||| || ||| | || || |||| ||||||| | || || || || |||||||||
Sbjct: 1461 gggaatccatgtgttggcgggaacagtattttccgttcgacgacgtttttcgcgcagagc 1520
Query: 1195 acttatgtgattcctttacctggtgttcccggtgcgtttatattcatggcagataggtgg 1254
|| | |||||||| ||||| |||||||| |||| ||||||||| ||||| |||||||||
Sbjct: 1521 acgttcgtgattccgttaccaggtgttcctggtgtgtttatatttatggccgataggtgg 1580
Query: 1255 aacccggctgatttgcgggattccagatacgtgtggttaccgtt 1298
|| ||||| |||||||| ||||| ||||| |||||||||||||
Sbjct: 1581 aatccggcggatttgcgagattcgagatatttgtggttaccgtt 1624
Score = 52.0 bits (26), Expect = 1e-05
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 241 atgccgccacctaggaagcgttctcctcgtactagtaaacggagatcaagaaaaccgatc 300
|||||||| |||||||||||||||||||| ||| ||||||| | ||| || ||| | |
Sbjct: 567 atgccgcctcctaggaagcgttctcctcgcgctatcaaacggaaaccaaaaacaccaacc 626
Query: 301 cctctcgttgaggagtttcttgacgacaagtcaccaattcgacatctttt 350
|| | || || |||||||| ||||| || |||| ||||||||||||||
Sbjct: 627 actttagtcgaagagtttctcgacgagaattcacagattcgacatctttt 676
>At4g36260.1 68417.m05157 zinc finger protein-related similar to lateral root
primordium 1 (LRP1) [Arabidopsis thaliana] GI:882341;
contains Pfam profile PF05142: Domain of unknown
function (DUF702), TIGR01624: LRP1 C-terminal domain,
TIGR01623: putative zinc finger domain, LRP1 type
Length = 1357
Score = 36.2 bits (18), Expect = 0.78
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 571 gttgatattattggtgtt 588
||||||||||||||||||
Sbjct: 365 gttgatattattggtgtt 348
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,924
Number of Sequences: 29161
Number of extensions: 37924
Number of successful extensions: 794
Number of sequences better than 10.0: 18
length of query: 1401
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1383
effective length of database: 43,533,334
effective search space: 60206600922
effective search space used: 60206600922
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)