BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18071.C1
(2134 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomeras... 4230 0.0
At5g67540.1 68418.m08517 glycosyl hydrolase family protein ... 236 6e-61
At5g67540.2 68418.m08516 glycosyl hydrolase family protein ... 236 6e-61
At5g55660.1 68418.m06940 expressed protein similar to unkno... 42 0.019
At5g64340.1 68418.m08081 expressed protein 40 0.076
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyclophilin-type
family protein contains Pfam domain, PF00160:
peptidyl-prolyl cis-trans isomerase, cyclophilin-type
Length = 2962
Score = 4230 bits (2134), Expect = 0.0
Identities = 2134/2134 (100%)
Strand = Plus / Plus
Query: 1 ggtagtatcagacagatcgaaaatcgcaacggttaagattccagctactgaaatctatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtagtatcagacagatcgaaaatcgcaacggttaagattccagctactgaaatctatca 60
Query: 61 acgtcgaagaagtgaacgatggggaagaaacaacacagcaaagatcggatgttcataacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgtcgaagaagtgaacgatggggaagaaacaacacagcaaagatcggatgttcataacg 120
Query: 121 aagacggagtgggcaacagaatggggaggcgctaaatccaaagagaatcgaactcctttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagacggagtgggcaacagaatggggaggcgctaaatccaaagagaatcgaactcctttc 180
Query: 181 aagagtcttccttactattgctgcgcgcttacgtttttgccattcgaagatcctgtgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagagtcttccttactattgctgcgcgcttacgtttttgccattcgaagatcctgtgtgt 240
Query: 241 acaatcgacgggagtgttttcgagataacaacaatagtgccttacattaggaaatttgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acaatcgacgggagtgttttcgagataacaacaatagtgccttacattaggaaatttgga 300
Query: 301 aaacatcctgttactggagctccattgaaaggagaagatctaattcctctcatctttcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaacatcctgttactggagctccattgaaaggagaagatctaattcctctcatctttcac 360
Query: 361 aagaactctgaaggagagtatcattgtcctgttctaaacaaagtcttcactgaatttaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagaactctgaaggagagtatcattgtcctgttctaaacaaagtcttcactgaatttaca 420
Query: 421 catattgttgctgtcaagactactggaaatgtattctgctacgaggcaatcaaagagttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 catattgttgctgtcaagactactggaaatgtattctgctacgaggcaatcaaagagttg 480
Query: 481 aatatcaaaaccaagaattggaaggagcttttaactgaagaaccatttacaagagccgac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatatcaaaaccaagaattggaaggagcttttaactgaagaaccatttacaagagccgac 540
Query: 541 cttataacaattcagaatcctaatgcagttgatggtaaagtgacggtggagtttgatcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cttataacaattcagaatcctaatgcagttgatggtaaagtgacggtggagtttgatcat 600
Query: 601 gttaaaaacggtcttaagatcgatgatgaagagttgaaaaagatgaactcagaccctgct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gttaaaaacggtcttaagatcgatgatgaagagttgaaaaagatgaactcagaccctgct 660
Query: 661 tataatataaacgtgtctggagatatcaagcacatgcttgcagatcttggaactgataaa 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tataatataaacgtgtctggagatatcaagcacatgcttgcagatcttggaactgataaa 720
Query: 721 gctaaagagattgctttacatggtggaggtggaaacaaggcacgtaatgaaagagccgct 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gctaaagagattgctttacatggtggaggtggaaacaaggcacgtaatgaaagagccgct 780
Query: 781 gctattgctgcgattctggagtcaagatcgaaaatcaaagaggtttctaaagcagaacaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gctattgctgcgattctggagtcaagatcgaaaatcaaagaggtttctaaagcagaacaa 840
Query: 841 ccgaaacagacctacagtgttgttgatgctgcatctgcttcggtttttggaagaagtgct 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ccgaaacagacctacagtgttgttgatgctgcatctgcttcggtttttggaagaagtgct 900
Query: 901 gatgcagctaaagctggttctagtgataaaacagctgcaagaatagctatgcatatggct 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gatgcagctaaagctggttctagtgataaaacagctgcaagaatagctatgcatatggct 960
Query: 961 ggagatagaacacctgttaattctaaaatggtgaagagccgttattcgtcgggtgctgct 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ggagatagaacacctgttaattctaaaatggtgaagagccgttattcgtcgggtgctgct 1020
Query: 1021 tctcgttctttcacttcctctgcctttactcctgtaaccaaaaacgattttgaactaatt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tctcgttctttcacttcctctgcctttactcctgtaaccaaaaacgattttgaactaatt 1080
Query: 1081 aaagtcgagaaaaacccgaaaaagaaagggtatgttcagtttcagacaacacatggcgat 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aaagtcgagaaaaacccgaaaaagaaagggtatgttcagtttcagacaacacatggcgat 1140
Query: 1141 ttgaacattgagctccattgcgatatagctcctagagcatgtgagaatttcatcactctc 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 ttgaacattgagctccattgcgatatagctcctagagcatgtgagaatttcatcactctc 1200
Query: 1201 tgtgaacgtggttactacaatggagtggcctttcacagaagtatcaggaacttcatgatt 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 tgtgaacgtggttactacaatggagtggcctttcacagaagtatcaggaacttcatgatt 1260
Query: 1261 caagggggcgatccaactggcacaggaaaaggaggtgaatccatttgggggaagccattc 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 caagggggcgatccaactggcacaggaaaaggaggtgaatccatttgggggaagccattc 1320
Query: 1321 aaagacgagccaaactcgaagctgcttcactcaggaagaggcgtagttagtatggctaat 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aaagacgagccaaactcgaagctgcttcactcaggaagaggcgtagttagtatggctaat 1380
Query: 1381 agtggacctcacacaaatggttctcagtttttcgtcttatacaaatcagcgacccattta 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 agtggacctcacacaaatggttctcagtttttcgtcttatacaaatcagcgacccattta 1440
Query: 1441 aactacaagcacacagtgtttggtggagttgttggtggtttggcaacactagcagcaatg 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 aactacaagcacacagtgtttggtggagttgttggtggtttggcaacactagcagcaatg 1500
Query: 1501 gagaatgtacctgtagatgaaagcgaccgtcctcttgaagagattaagataatcgaggca 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 gagaatgtacctgtagatgaaagcgaccgtcctcttgaagagattaagataatcgaggca 1560
Query: 1561 agtgtgtttgtgaatccatacacggagcttgatgaagaggaagagaaagagaaagctgag 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 agtgtgtttgtgaatccatacacggagcttgatgaagaggaagagaaagagaaagctgag 1620
Query: 1621 aaagagaagaatgaagacaaagacattgagaagatcgggtcgtggtacagcaacccggga 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 aaagagaagaatgaagacaaagacattgagaagatcgggtcgtggtacagcaacccggga 1680
Query: 1681 tcaggaacaacagaagctggagcgggtggcggtggtgtcggaaaatacttgaaagctatg 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 tcaggaacaacagaagctggagcgggtggcggtggtgtcggaaaatacttgaaagctatg 1740
Query: 1741 agtagtacagccactaaagacactaaaggttccctagactcagatatttcaaccattgga 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 agtagtacagccactaaagacactaaaggttccctagactcagatatttcaaccattgga 1800
Query: 1801 gtgtctaagaaaagaaaaactactgcgtcagcctccacagggtttaaagatttctctagc 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 gtgtctaagaaaagaaaaactactgcgtcagcctccacagggtttaaagatttctctagc 1860
Query: 1861 tggtaattgaaaacattctctacctactttgtaaaaccgttgactagttttgatagagac 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 tggtaattgaaaacattctctacctactttgtaaaaccgttgactagttttgatagagac 1920
Query: 1921 caagtcacaaaagcatttgtatgacaacactgagcctttgatgtccaaaatctggagctg 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 caagtcacaaaagcatttgtatgacaacactgagcctttgatgtccaaaatctggagctg 1980
Query: 1981 tgtaataaagttgactagttttgatggagcccaaaagtcacaaaagcatttgtataacag 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 tgtaataaagttgactagttttgatggagcccaaaagtcacaaaagcatttgtataacag 2040
Query: 2041 cccaagtcacaaacgcatttgtataacattgaacctttgatgtccaagagctgaggctgt 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 cccaagtcacaaacgcatttgtataacattgaacctttgatgtccaagagctgaggctgt 2100
Query: 2101 atcttcagtaaaaagatttattaagtataatcct 2134
||||||||||||||||||||||||||||||||||
Sbjct: 2101 atcttcagtaaaaagatttattaagtataatcct 2134
>At5g67540.1 68418.m08517 glycosyl hydrolase family protein 43 contains similarity
to xylanase GI:2645416 from [Caldicellulosiruptor
saccharolyticus]
Length = 1933
Score = 236 bits (119), Expect = 6e-61
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 2016 agtcacaaaagcatttgtataacagcccaagtcacaaacgcatttgtataacattgaacc 2075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933 agtcacaaaagcatttgtataacagcccaagtcacaaacgcatttgtataacattgaacc 1874
Query: 2076 tttgatgtccaagagctgaggctgtatcttcagtaaaaagatttattaagtataatcct 2134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1873 tttgatgtccaagagctgaggctgtatcttcagtaaaaagatttattaagtataatcct 1815
Score = 46.1 bits (23), Expect = 0.001
Identities = 43/49 (87%), Gaps = 3/49 (6%)
Strand = Plus / Minus
Query: 1920 ccaagtcacaaaagcatttgtatgacaacactgagcctttgatgtccaa 1968
|||||||||||| |||||||||| |||| ||| ||||||||||||||
Sbjct: 1907 ccaagtcacaaacgcatttgtat---aacattgaacctttgatgtccaa 1862
Score = 42.1 bits (21), Expect = 0.019
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 2015 aagtcacaaaagcatttgtataaca 2039
|||||||||| ||||||||||||||
Sbjct: 1905 aagtcacaaacgcatttgtataaca 1881
Score = 40.1 bits (20), Expect = 0.076
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1923 agtcacaaaagcatttgtat 1942
||||||||||||||||||||
Sbjct: 1933 agtcacaaaagcatttgtat 1914
>At5g67540.2 68418.m08516 glycosyl hydrolase family protein 43 contains similarity
to xylanase GI:2645416 from [Caldicellulosiruptor
saccharolyticus]
Length = 2016
Score = 236 bits (119), Expect = 6e-61
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 2016 agtcacaaaagcatttgtataacagcccaagtcacaaacgcatttgtataacattgaacc 2075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2016 agtcacaaaagcatttgtataacagcccaagtcacaaacgcatttgtataacattgaacc 1957
Query: 2076 tttgatgtccaagagctgaggctgtatcttcagtaaaaagatttattaagtataatcct 2134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1956 tttgatgtccaagagctgaggctgtatcttcagtaaaaagatttattaagtataatcct 1898
Score = 46.1 bits (23), Expect = 0.001
Identities = 43/49 (87%), Gaps = 3/49 (6%)
Strand = Plus / Minus
Query: 1920 ccaagtcacaaaagcatttgtatgacaacactgagcctttgatgtccaa 1968
|||||||||||| |||||||||| |||| ||| ||||||||||||||
Sbjct: 1990 ccaagtcacaaacgcatttgtat---aacattgaacctttgatgtccaa 1945
Score = 42.1 bits (21), Expect = 0.019
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 2015 aagtcacaaaagcatttgtataaca 2039
|||||||||| ||||||||||||||
Sbjct: 1988 aagtcacaaacgcatttgtataaca 1964
Score = 40.1 bits (20), Expect = 0.076
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1923 agtcacaaaagcatttgtat 1942
||||||||||||||||||||
Sbjct: 2016 agtcacaaaagcatttgtat 1997
>At5g55660.1 68418.m06940 expressed protein similar to unknown protein
(pir||T08929)
Length = 2669
Score = 42.1 bits (21), Expect = 0.019
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1585 gagcttgatgaagaggaagagaaagagaaagct 1617
|||| ||| ||||| ||||||||||||||||||
Sbjct: 2269 gagcatgaggaagaagaagagaaagagaaagct 2301
>At5g64340.1 68418.m08081 expressed protein
Length = 2471
Score = 40.1 bits (20), Expect = 0.076
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1595 aagaggaagagaaagagaaa 1614
||||||||||||||||||||
Sbjct: 212 aagaggaagagaaagagaaa 231
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,980
Number of Sequences: 29161
Number of extensions: 79980
Number of successful extensions: 2387
Number of sequences better than 10.0: 81
length of query: 2134
length of database: 44,058,232
effective HSP length: 18
effective length of query: 2116
effective length of database: 43,533,334
effective search space: 92116534744
effective search space used: 92116534744
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)