BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BT001006.F
(1788 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomeras... 3544 0.0
At5g55660.1 68418.m06940 expressed protein similar to unkno... 42 0.016
At5g64340.1 68418.m08081 expressed protein 40 0.064
At1g05385.1 68414.m00547 photosystem II 11 kDa protein-rela... 40 0.064
At5g54390.1 68418.m06773 inositol monophosphatase family pr... 38 0.25
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyclophilin-type
family protein contains Pfam domain, PF00160:
peptidyl-prolyl cis-trans isomerase, cyclophilin-type
Length = 2962
Score = 3544 bits (1788), Expect = 0.0
Identities = 1788/1788 (100%)
Strand = Plus / Plus
Query: 1 atggggaagaaacaacacagcaaagatcggatgttcataacgaagacggagtgggcaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 atggggaagaaacaacacagcaaagatcggatgttcataacgaagacggagtgggcaaca 138
Query: 61 gaatggggaggcgctaaatccaaagagaatcgaactcctttcaagagtcttccttactat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gaatggggaggcgctaaatccaaagagaatcgaactcctttcaagagtcttccttactat 198
Query: 121 tgctgcgcgcttacgtttttgccattcgaagatcctgtgtgtacaatcgacgggagtgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgctgcgcgcttacgtttttgccattcgaagatcctgtgtgtacaatcgacgggagtgtt 258
Query: 181 ttcgagataacaacaatagtgccttacattaggaaatttggaaaacatcctgttactgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttcgagataacaacaatagtgccttacattaggaaatttggaaaacatcctgttactgga 318
Query: 241 gctccattgaaaggagaagatctaattcctctcatctttcacaagaactctgaaggagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gctccattgaaaggagaagatctaattcctctcatctttcacaagaactctgaaggagag 378
Query: 301 tatcattgtcctgttctaaacaaagtcttcactgaatttacacatattgttgctgtcaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tatcattgtcctgttctaaacaaagtcttcactgaatttacacatattgttgctgtcaag 438
Query: 361 actactggaaatgtattctgctacgaggcaatcaaagagttgaatatcaaaaccaagaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 actactggaaatgtattctgctacgaggcaatcaaagagttgaatatcaaaaccaagaat 498
Query: 421 tggaaggagcttttaactgaagaaccatttacaagagccgaccttataacaattcagaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tggaaggagcttttaactgaagaaccatttacaagagccgaccttataacaattcagaat 558
Query: 481 cctaatgcagttgatggtaaagtgacggtggagtttgatcatgttaaaaacggtcttaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cctaatgcagttgatggtaaagtgacggtggagtttgatcatgttaaaaacggtcttaag 618
Query: 541 atcgatgatgaagagttgaaaaagatgaactcagaccctgcttataatataaacgtgtct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atcgatgatgaagagttgaaaaagatgaactcagaccctgcttataatataaacgtgtct 678
Query: 601 ggagatatcaagcacatgcttgcagatcttggaactgataaagctaaagagattgcttta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggagatatcaagcacatgcttgcagatcttggaactgataaagctaaagagattgcttta 738
Query: 661 catggtggaggtggaaacaaggcacgtaatgaaagagccgctgctattgctgcgattctg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 catggtggaggtggaaacaaggcacgtaatgaaagagccgctgctattgctgcgattctg 798
Query: 721 gagtcaagatcgaaaatcaaagaggtttctaaagcagaacaaccgaaacagacctacagt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gagtcaagatcgaaaatcaaagaggtttctaaagcagaacaaccgaaacagacctacagt 858
Query: 781 gttgttgatgctgcatctgcttcggtttttggaagaagtgctgatgcagctaaagctggt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gttgttgatgctgcatctgcttcggtttttggaagaagtgctgatgcagctaaagctggt 918
Query: 841 tctagtgataaaacagctgcaagaatagctatgcatatggctggagatagaacacctgtt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 tctagtgataaaacagctgcaagaatagctatgcatatggctggagatagaacacctgtt 978
Query: 901 aattctaaaatggtgaagagccgttattcgtcgggtgctgcttctcgttctttcacttcc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 aattctaaaatggtgaagagccgttattcgtcgggtgctgcttctcgttctttcacttcc 1038
Query: 961 tctgcctttactcctgtaaccaaaaacgattttgaactaattaaagtcgagaaaaacccg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 tctgcctttactcctgtaaccaaaaacgattttgaactaattaaagtcgagaaaaacccg 1098
Query: 1021 aaaaagaaagggtatgttcagtttcagacaacacatggcgatttgaacattgagctccat 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 aaaaagaaagggtatgttcagtttcagacaacacatggcgatttgaacattgagctccat 1158
Query: 1081 tgcgatatagctcctagagcatgtgagaatttcatcactctctgtgaacgtggttactac 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 tgcgatatagctcctagagcatgtgagaatttcatcactctctgtgaacgtggttactac 1218
Query: 1141 aatggagtggcctttcacagaagtatcaggaacttcatgattcaagggggcgatccaact 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1219 aatggagtggcctttcacagaagtatcaggaacttcatgattcaagggggcgatccaact 1278
Query: 1201 ggcacaggaaaaggaggtgaatccatttgggggaagccattcaaagacgagccaaactcg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1279 ggcacaggaaaaggaggtgaatccatttgggggaagccattcaaagacgagccaaactcg 1338
Query: 1261 aagctgcttcactcaggaagaggcgtagttagtatggctaatagtggacctcacacaaat 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1339 aagctgcttcactcaggaagaggcgtagttagtatggctaatagtggacctcacacaaat 1398
Query: 1321 ggttctcagtttttcgtcttatacaaatcagcgacccatttaaactacaagcacacagtg 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 ggttctcagtttttcgtcttatacaaatcagcgacccatttaaactacaagcacacagtg 1458
Query: 1381 tttggtggagttgttggtggtttggcaacactagcagcaatggagaatgtacctgtagat 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1459 tttggtggagttgttggtggtttggcaacactagcagcaatggagaatgtacctgtagat 1518
Query: 1441 gaaagcgaccgtcctcttgaagagattaagataatcgaggcaagtgtgtttgtgaatcca 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1519 gaaagcgaccgtcctcttgaagagattaagataatcgaggcaagtgtgtttgtgaatcca 1578
Query: 1501 tacacggagcttgatgaagaggaagagaaagagaaagctgagaaagagaagaatgaagac 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 tacacggagcttgatgaagaggaagagaaagagaaagctgagaaagagaagaatgaagac 1638
Query: 1561 aaagacattgagaagatcgggtcgtggtacagcaacccgggatcaggaacaacagaagct 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1639 aaagacattgagaagatcgggtcgtggtacagcaacccgggatcaggaacaacagaagct 1698
Query: 1621 ggagcgggtggcggtggtgtcggaaaatacttgaaagctatgagtagtacagccactaaa 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1699 ggagcgggtggcggtggtgtcggaaaatacttgaaagctatgagtagtacagccactaaa 1758
Query: 1681 gacactaaaggttccctagactcagatatttcaaccattggagtgtctaagaaaagaaaa 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1759 gacactaaaggttccctagactcagatatttcaaccattggagtgtctaagaaaagaaaa 1818
Query: 1741 actactgcgtcagcctccacagggtttaaagatttctctagctggtaa 1788
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1819 actactgcgtcagcctccacagggtttaaagatttctctagctggtaa 1866
>At5g55660.1 68418.m06940 expressed protein similar to unknown protein
(pir||T08929)
Length = 2669
Score = 42.1 bits (21), Expect = 0.016
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1507 gagcttgatgaagaggaagagaaagagaaagct 1539
|||| ||| ||||| ||||||||||||||||||
Sbjct: 2269 gagcatgaggaagaagaagagaaagagaaagct 2301
>At5g64340.1 68418.m08081 expressed protein
Length = 2471
Score = 40.1 bits (20), Expect = 0.064
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1517 aagaggaagagaaagagaaa 1536
||||||||||||||||||||
Sbjct: 212 aagaggaagagaaagagaaa 231
>At1g05385.1 68414.m00547 photosystem II 11 kDa protein-related similar to
Photosystem II 11 kDa protein precursor
(SP|P74367)[strain PCC 6803] {Synechocystis sp.}
Length = 743
Score = 40.1 bits (20), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 812 gaagaagtgctgatgcagctaaag 835
|||||||||||||||| |||||||
Sbjct: 453 gaagaagtgctgatgctgctaaag 476
>At5g54390.1 68418.m06773 inositol monophosphatase family protein similar to
SP|Q42546 3'(2'),5'-bisphosphate nucleotidase (EC
3.1.3.7) {Arabidopsis thaliana}; contains Pfam profile
PF00459: Inositol monophosphatase family; supporting cDNA
gi|1354509|gb|U55205.1|ATU55205
Length = 1588
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1516 gaagaggaagagaaagaga 1534
|||||||||||||||||||
Sbjct: 107 gaagaggaagagaaagaga 89
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,341
Number of Sequences: 29161
Number of extensions: 70341
Number of successful extensions: 2174
Number of sequences better than 10.0: 73
length of query: 1788
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1770
effective length of database: 43,533,334
effective search space: 77054001180
effective search space used: 77054001180
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)