BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18070.C1
(1143 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67520.1 68418.m08514 adenylylsulfate kinase, putative s... 2232 0.0
At2g14750.1 68415.m01666 adenylylsulfate kinase 1 (AKN1) id... 80 5e-14
At3g03900.1 68416.m00404 adenylylsulfate kinase, putative s... 74 3e-12
At3g28790.1 68416.m03593 expressed protein 70 5e-11
At2g42710.1 68415.m05289 ribosomal protein L1 family protein 62 1e-08
>At5g67520.1 68418.m08514 adenylylsulfate kinase, putative similar to
adenylylsulfate kinase, chloroplast precursor (APS
kinase, Adenosine-5'phosphosulfate kinase, ATP
adenosine-5'- phosphosulfate 3'-phosphotransferase)
[Catharanthus roseus] SWISS-PROT:O49204
Length = 1220
Score = 2232 bits (1126), Expect = 0.0
Identities = 1129/1130 (99%)
Strand = Plus / Plus
Query: 1 tctacaagtttttgatttcagagtccaccgttgagcctgttcaattaaatcgttgaatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tctacaagtttttgatttcagagtccaccgttgagcctgttcaattaaatcgttgaatct 143
Query: 61 cgcggtgcgttttactttgattctttcgaattttttttatatggatgttgccgcgatggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 cgcggtgcgttttactttgattctttcgaattttttttatatggatgttgccgcgatggc 203
Query: 121 gagatgtgtgggaaggtgctacgtttcgccggcgttcggtgagtctgaatcgcaccggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gagatgtgtgggaaggtgctacgtttcgccggcgttcggtgagtctgaatcgcaccggtt 263
Query: 181 atcggagcggcggtttctgaaattgtctagctccacgaattcggatcccgccggtagtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcggagcggcggtttctgaaattgtctagctccacgaattcggatcccgccggtagtaa 323
Query: 241 aagtttgaagcttcgcgggaaaattcatcggagaatgagctacttccgtccgatcatggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagtttgaagcttcgcgggaaaattcatcggagaatgagctacttccgtccgatcatggc 383
Query: 301 aaaagatgaatccatttcatcgcggtccggtgaaacgaagcaaatcaatggaaagcaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaagatgaatccatttcatcgcggtccggtgaaacgaagcaaatcaatggaaagcaaaa 443
Query: 361 gaacattgtctggcatgattgtcccgttactaaatccgacaggcaagaattaattaagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaacattgtctggcatgattgtcccgttactaaatccgacaggcaagaattaattaagca 503
Query: 421 aaagggatgtgtgatttggattactggcttaagtggttcaggtaaaagtagtctggcatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaagggatgtgtgatttggattactggcttaagtggttcaggtaaaagtagtctggcatg 563
Query: 481 tgctcttagtcgagctttgcacaatcgtggaaagctttcgtatatacttgatggtgacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgctcttagtcgagctttgcacaatcgtggaaagctttcgtatatacttgatggtgacaa 623
Query: 541 tgttcgacatggtttaaacagcgatcttagtttcgaagcagatgatcgagctgaaaacat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgttcgacatggtttaaacagcgatcttagtttcgaagcagatgatcgagctgaaaacat 683
Query: 601 tcgaagagttggtgaagtggctaaactgtttgcagattctggtattatctgtattgcaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcgaagagttggtgaagtggctaaactgtttgcagattctggtattatctgtattgcaag 743
Query: 661 tttaatatctccttaccggatagaacgagctgcctgccgtgcattattaccacaaggaga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tttaatatctccttaccggatagaacgagctgcctgccgtgcattattaccacaaggaga 803
Query: 721 tttcattgaggtatttatggatgtgccactccatgtttgtgaagctagagatccaaaggg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tttcattgaggtatttatggatgtgccactccatgtttgtgaagctagagatccaaaggg 863
Query: 781 cttatacaaacgtgcacgcgctggtaaaatcaaaggttttacaggagtagatgatccata 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cttatacaaacgtgcacgcgctggtaaaatcaaaggttttacaggagtagatgatccata 923
Query: 841 tgaagcgcctttggattgcgagattgtgatacaaaacagtagagacaaggggctttcttc 900
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 924 tgaagcgcctttggattgcgagattgtaatacaaaacagtagagacaaggggctttcttc 983
Query: 901 ttcatcttcatcttcatcttcaccttcatcttcgtcttcttctctgtgtgaaatggcaga 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ttcatcttcatcttcatcttcaccttcatcttcgtcttcttctctgtgtgaaatggcaga 1043
Query: 961 tattgttgtgtcgtacttggaccaaaatggatacctgaagaaacactccacaaaatcacg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 tattgttgtgtcgtacttggaccaaaatggatacctgaagaaacactccacaaaatcacg 1103
Query: 1021 taattgtatgtaaatgtaatattaatatcattgttgtaacgtttcttaaacctattttac 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 taattgtatgtaaatgtaatattaatatcattgttgtaacgtttcttaaacctattttac 1163
Query: 1081 ctatggacgattaaattgtgaaaacataaatgtaattcacaatctgcaaa 1130
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 ctatggacgattaaattgtgaaaacataaatgtaattcacaatctgcaaa 1213
>At2g14750.1 68415.m01666 adenylylsulfate kinase 1 (AKN1) identical to
adenylylsulfate kinase 1, chloroplast precursor (APS
kinase, Adenosine-5'phosphosulfate kinase, ATP
adenosine-5'- phosphosulfate 3'-phosphotransferase)
[Arabidopsis thaliana] SWISS-PROT:Q43295
Length = 1128
Score = 79.8 bits (40), Expect = 5e-14
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 512 aagctttcgtatatacttgatggtgacaatgttcgacatggtttaaacagcgatcttagt 571
||||||| ||||| ||||||||||| |||||| | ||||| |||||| | ||||||||
Sbjct: 420 aagctttgttatattcttgatggtgataatgttaggcatggcttaaaccgtgatcttagc 479
Query: 572 ttcgaagcagatgatcgagctgaaaacattcgaagagttggtgaagtggctaaactgttt 631
|| |||| || ||||| || || || ||||| |||||||| || || ||||| || |||
Sbjct: 480 tttaaagctgaggatcgtgcagagaatattcgtagagttggagaggttgctaagcttttt 539
Query: 632 gcagattctggtattatctgtattgcaagtttaatatctcctta 675
|| ||| |||| || ||||| ||||| ||||| |||||||||||
Sbjct: 540 gcggatgctggaataatctgcattgcgagtttgatatctcctta 583
Score = 32.2 bits (16), Expect = 9.9
Identities = 49/60 (81%)
Strand = Plus / Plus
Query: 425 ggatgtgtgatttggattactggcttaagtggttcaggtaaaagtagtctggcatgtgct 484
||||||||||||||| | || || | ||||||||||| || |||| | |||| ||||||
Sbjct: 333 ggatgtgtgatttgggtcaccggtcttagtggttcagggaagagtactttggcttgtgct 392
>At3g03900.1 68416.m00404 adenylylsulfate kinase, putative similar to
adenylylsulfate kinase 1, chloroplast precursor (APS
kinase, Adenosine-5'phosphosulfate kinase, ATP
adenosine-5'- phosphosulfate 3'-phosphotransferase)
[Arabidopsis thaliana] SWISS-PROT:Q43295
Length = 627
Score = 73.8 bits (37), Expect = 3e-12
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 509 ggaaagctttcgtatatacttgatggtgacaatgttcgacatggtttaaacagcgatctt 568
|||||||| || ||||| ||||||||||||||| |||| |||||||| |||| ||||||
Sbjct: 172 ggaaagctatcatatattcttgatggtgacaatcttcgtcatggtttgaacaaagatctt 231
Query: 569 agtttcgaagcagatgatcgagctgaaaacattcgaagagttggtgaagtggctaaactg 628
||||| | ||||| ||| ||| ||||| || || || || || ||||| || |||||
Sbjct: 232 ggtttcaaggcagaggatagagtggaaaatatacgcagggtcggagaagtagccaaactc 291
Query: 629 tttgcagattctggtattatctgtattgc 657
||||| ||| ||||| | |||||||||||
Sbjct: 292 tttgcggatgctggtttaatctgtattgc 320
Score = 52.0 bits (26), Expect = 1e-05
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 758 tgtgaagctagagatccaaagggcttatacaaacgtgcacgcgctggtaaaatcaaaggt 817
|||||||| || || || || ||| ||||||| | |||||| || || || |||||||||
Sbjct: 421 tgtgaagcaagggaccctaaaggcctatacaagcttgcacgtgcaggaaagatcaaaggt 480
Query: 818 tttacaggagtagatgatccatatga 843
|| |||||| |||||||||| |||||
Sbjct: 481 ttcacaggaatagatgatccgtatga 506
>At3g28790.1 68416.m03593 expressed protein
Length = 2181
Score = 69.9 bits (35), Expect = 5e-11
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 897 cttcttcatcttcatcttcatcttcaccttcatcttcgtcttcttct 943
|||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 1853 cttcttcaagttcatcttcatcttcatcttcatcttcgtcttcttct 1899
Score = 56.0 bits (28), Expect = 7e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 901 ttcatcttcatcttcatcttcaccttcatcttcgtcttcttctc 944
|||||||||||||||||||||| |||| ||||| ||||| ||||
Sbjct: 1863 ttcatcttcatcttcatcttcatcttcgtcttcttcttcctctc 1906
>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
Length = 1525
Score = 61.9 bits (31), Expect = 1e-08
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 899 tcttcatcttcatcttcatcttcaccttcatcttc 933
|||||||||||||||||||||||| ||||||||||
Sbjct: 138 tcttcatcttcatcttcatcttcatcttcatcttc 172
Score = 56.0 bits (28), Expect = 7e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 899 tcttcatcttcatcttcatcttcaccttcatc 930
|||||||||||||||||||||||| |||||||
Sbjct: 144 tcttcatcttcatcttcatcttcatcttcatc 175
Score = 54.0 bits (27), Expect = 3e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 905 tcttcatcttcatcttcaccttcatcttcgtcttc 939
|||||||||||||||||| |||||||||| |||||
Sbjct: 138 tcttcatcttcatcttcatcttcatcttcatcttc 172
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,381
Number of Sequences: 29161
Number of extensions: 58381
Number of successful extensions: 5082
Number of sequences better than 10.0: 700
length of query: 1143
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1125
effective length of database: 43,533,334
effective search space: 48975000750
effective search space used: 48975000750
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)