BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18069.C1
(640 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B) 1237 0.0
At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A)... 155 5e-37
At4g12670.1 68417.m01991 expressed protein ; expression su... 44 0.001
At5g10020.1 68418.m01161 leucine-rich repeat transmembrane ... 42 0.006
At3g19800.1 68416.m02508 expressed protein 38 0.089
>At5g67510.1 68418.m08513 60S ribosomal protein L26 (RPL26B)
Length = 639
Score = 1237 bits (624), Expect = 0.0
Identities = 637/640 (99%), Gaps = 1/640 (0%)
Strand = Plus / Plus
Query: 1 cagcaaaaaaaaaccctaaatttcttcacaaattcagcggcgatgaagttcaatccgcgt 60
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagcacaaaaaaaccctaa-tttcttcacaaattcagcggcgatgaagttcaatccgcgt 59
Query: 61 gtgagctcttctcgccggaagaacaggaaggctcacttcacagctccttcaagcgtgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gtgagctcttctcgccggaagaacaggaaggctcacttcacagctccttcaagcgtgagg 119
Query: 121 cgcgttctcatgagctcgccgttatccaaggatctccgtaacaaacacaacgtcagatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 cgcgttctcatgagctcgccgttatccaaggatctccgtaacaaacacaacgtcagatcc 179
Query: 181 atgccgattcgtaaagacgacgaagtgcaagttgttcgtgggacgttcaagggaagagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atgccgattcgtaaagacgacgaagtgcaagttgttcgtgggacgttcaagggaagagaa 239
Query: 241 gggaaggtgatgcaggtgtatcgccgcaagtgggtgattcacatcgagagaatcacaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gggaaggtgatgcaggtgtatcgccgcaagtgggtgattcacatcgagagaatcacaagg 299
Query: 301 gagaaagtcaacggatccacggtcaacgtcggagtcaatgcttcgaatgtgatgatcact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gagaaagtcaacggatccacggtcaacgtcggagtcaatgcttcgaatgtgatgatcact 359
Query: 361 aagctccgtctcgataaggataggaagtcgcttttggagcgtaaggctaatggacgcgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aagctccgtctcgataaggataggaagtcgcttttggagcgtaaggctaatggacgcgcc 419
Query: 421 gccgccgataaggagaagggaaccaagttttcagccgaagatgtcatggagaacgtagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gccgccgataaggagaagggaaccaagttttcagccgaagatgtcatggagaacgtagat 479
Query: 481 tgatcttaacgtatggttttttcttcttcttttctagttttctattttgatttcattgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgatcttaacgtatggttttttcttcttcttttctagttttctattttgatttcattgat 539
Query: 541 gatgatatgattcagaattcgaagttgaattttgtggttttcttatcaatgtacctcatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gatgatatgattcagaattcgaagttgaattttgtggttttcttatcaatgtacctcatt 599
Query: 601 tatgcttatatttctagctattgaaattggattgagattt 640
||||||||||||||||||||||||||||||| ||||||||
Sbjct: 600 tatgcttatatttctagctattgaaattggactgagattt 639
>At3g49910.1 68416.m05456 60S ribosomal protein L26 (RPL26A) 60S RIBOSOMAL
PROTEIN L26, Brassica rapa, EMBL:BRD495
Length = 712
Score = 155 bits (78), Expect = 5e-37
Identities = 312/390 (80%)
Strand = Plus / Plus
Query: 61 gtgagctcttctcgccggaagaacaggaaggctcacttcacagctccttcaagcgtgagg 120
|||| |||||||||| | ||||||||||||||||| ||||||||| | || |||| ||||
Sbjct: 74 gtgacctcttctcgcagaaagaacaggaaggctcatttcacagcttcctccagcgagagg 133
Query: 121 cgcgttctcatgagctcgccgttatccaaggatctccgtaacaaacacaacgtcagatcc 180
|| || | |||||||| || | |||| ||||| ||| | || |||| |||||||||
Sbjct: 134 cgtgtgataatgagctctcctctctccaccgatcttcgtcagaagtacaatgtcagatcc 193
Query: 181 atgccgattcgtaaagacgacgaagtgcaagttgttcgtgggacgttcaagggaagagaa 240
|||||||| |||||||||||||| || || | |||||||| || | ||||||| | |||
Sbjct: 194 atgccgatccgtaaagacgacgaggttcagatcgttcgtggtacttacaagggacgtgaa 253
Query: 241 gggaaggtgatgcaggtgtatcgccgcaagtgggtgattcacatcgagagaatcacaagg 300
|| || || | ||||| || || ||||| |||||||||||||||||||||||||| |||
Sbjct: 254 ggcaaagttgttcaggtttaccgtcgcaaatgggtgattcacatcgagagaatcacgagg 313
Query: 301 gagaaagtcaacggatccacggtcaacgtcggagtcaatgcttcgaatgtgatgatcact 360
||||| || || ||| | || || ||||| || | | | ||||| || |||| ||
Sbjct: 314 gagaaggtgaatggaacaaccgtgaacgttgggattcagccgtcgaaagttgtgataacg 373
Query: 361 aagctccgtctcgataaggataggaagtcgcttttggagcgtaaggctaatggacgcgcc 420
||||| ||||| ||||| |||||||| |||||||||||| | |||||||| ||||| ||
Sbjct: 374 aagcttcgtcttgataaagataggaaatcgcttttggagaggaaggctaagggacgtgct 433
Query: 421 gccgccgataaggagaagggaaccaagttt 450
|| || |||||||||||||| || ||||||
Sbjct: 434 gctgctgataaggagaagggtactaagttt 463
>At4g12670.1 68417.m01991 expressed protein ; expression supported by MPSS
Length = 1563
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 231 gggaagagaagggaaggtgatg 252
||||||||||||||||||||||
Sbjct: 139 gggaagagaagggaaggtgatg 160
>At5g10020.1 68418.m01161 leucine-rich repeat transmembrane protein kinase,
putative receptor-like protein kinase ERECTA, Arabidopsis
thaliana, EMBL:AC004484
Length = 3693
Score = 42.1 bits (21), Expect = 0.006
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 497 ttttttcttcttcttttctagtttt 521
||||||||||||||||||| |||||
Sbjct: 3474 ttttttcttcttcttttctggtttt 3498
>At3g19800.1 68416.m02508 expressed protein
Length = 1408
Score = 38.2 bits (19), Expect = 0.089
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 230 agggaagagaagggaaggtgatg 252
|||||||| ||||||||||||||
Sbjct: 128 agggaagaaaagggaaggtgatg 106
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,782
Number of Sequences: 29161
Number of extensions: 32782
Number of successful extensions: 2924
Number of sequences better than 10.0: 92
length of query: 640
length of database: 44,058,232
effective HSP length: 17
effective length of query: 623
effective length of database: 43,562,495
effective search space: 27139434385
effective search space used: 27139434385
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)