BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18068.C1
(1182 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67500.1 68418.m08512 porin, putative similar to SP|P420... 2341 0.0
At3g49920.1 68416.m05458 porin, putative similar to SP|P420... 149 6e-35
At5g57490.1 68418.m07184 porin, putative similar to 36kDA p... 48 2e-04
At5g15090.1 68418.m01768 porin, putative / voltage-dependen... 46 7e-04
At1g06950.1 68414.m00738 chloroplast inner envelope protein... 42 0.011
>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34 kDa outer
mitochondrial membrane protein porin (Voltage-dependent
anion-selective channel protein) (VDAC) {Solanum
tuberosum}; contains Pfam profile PF01459: Eukaryotic
porin
Length = 1251
Score = 2341 bits (1181), Expect = 0.0
Identities = 1181/1181 (100%)
Strand = Plus / Plus
Query: 1 gtaattcttctatcttgatatcttcaccgcctgccgatctctctcaatctccgatcaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtaattcttctatcttgatatcttcaccgcctgccgatctctctcaatctccgatcaacc 60
Query: 61 atgagcaaaggtccaggactcttcaccgatatcggcaagaaagccaaagatctgttgacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgagcaaaggtccaggactcttcaccgatatcggcaagaaagccaaagatctgttgacg 120
Query: 121 agagactacaattccgatcagaagttcagtatctccacttacagtgcctccggcgtggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agagactacaattccgatcagaagttcagtatctccacttacagtgcctccggcgtggcc 180
Query: 181 cttacgtctactgctctgaagaaaggaggagttcatgctgctgatgttgccacccaatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttacgtctactgctctgaagaaaggaggagttcatgctgctgatgttgccacccaatac 240
Query: 241 aagtacaagaatgctttgtttgatgttaaaatcgacactgattctagtgttttgacaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagtacaagaatgctttgtttgatgttaaaatcgacactgattctagtgttttgacaaca 300
Query: 301 gtcacacttaccgagatcctcccatcaacaaaagccattgcctccttcaaagtccctgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtcacacttaccgagatcctcccatcaacaaaagccattgcctccttcaaagtccctgat 360
Query: 361 tataattccgccaagctcgaggtgcaatacttccacgaccacgcaacagttaccgctgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tataattccgccaagctcgaggtgcaatacttccacgaccacgcaacagttaccgctgct 420
Query: 421 gcagctttgaaacaaaacccactaattgacataacagctactcttggttcgccagtcatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcagctttgaaacaaaacccactaattgacataacagctactcttggttcgccagtcatc 480
Query: 481 tcatttggtgctgaagctggatatgacacaacctccaaaactttcaccaagtacaatgcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcatttggtgctgaagctggatatgacacaacctccaaaactttcaccaagtacaatgcc 540
Query: 541 gggatcagtgtgacaaaaccagatgcttgcctctccataatattgggagacaaaggagac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gggatcagtgtgacaaaaccagatgcttgcctctccataatattgggagacaaaggagac 600
Query: 601 tcactcaaagcatcataccttcatcactttgatgaatttaagagaaccgcagcagttggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcactcaaagcatcataccttcatcactttgatgaatttaagagaaccgcagcagttggt 660
Query: 661 gaggtttacaggaagttctcgacaaatgaaaacacgataacggttggtggattgtatgcg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaggtttacaggaagttctcgacaaatgaaaacacgataacggttggtggattgtatgcg 720
Query: 721 attgatcattcgactgcagtgaaagctaagctcaacaaccatggcacacttggtgctctt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 attgatcattcgactgcagtgaaagctaagctcaacaaccatggcacacttggtgctctt 780
Query: 781 ctgcagcacgaggtcctgcccagatcactagtgactgtttccagtgagattgacactaag 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ctgcagcacgaggtcctgcccagatcactagtgactgtttccagtgagattgacactaag 840
Query: 841 gctttagaaaagcatccaaggtttggtctctctcttgctctcaaaccttgagaacacaca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gctttagaaaagcatccaaggtttggtctctctcttgctctcaaaccttgagaacacaca 900
Query: 901 ctcacatcagacctgcttgagtcttcctacttttctcgtatgctctcattgttgatttcc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ctcacatcagacctgcttgagtcttcctacttttctcgtatgctctcattgttgatttcc 960
Query: 961 tctacggcaggacgtgagagttagcgtttttttcctccttttttccttacgtttaattgg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tctacggcaggacgtgagagttagcgtttttttcctccttttttccttacgtttaattgg 1020
Query: 1021 aatcaataaatagttccgcagtgaaattgacggataattctttttttggatatgctcggt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aatcaataaatagttccgcagtgaaattgacggataattctttttttggatatgctcggt 1080
Query: 1081 tttggttttttttttatctttcttttataattaagcactcttcttgaatatacactcagt 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tttggttttttttttatctttcttttataattaagcactcttcttgaatatacactcagt 1140
Query: 1141 gatttttttcttttcttttagtacaatccagttaaaaaaac 1181
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gatttttttcttttcttttagtacaatccagttaaaaaaac 1181
>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34 kDa outer
mitochondrial membrane protein porin (Voltage-dependent
anion-selective channel protein) (VDAC) {Solanum
tuberosum}; contains Pfam profile PF01459: Eukaryotic
porin
Length = 681
Score = 149 bits (75), Expect = 6e-35
Identities = 159/187 (85%)
Strand = Plus / Plus
Query: 61 atgagcaaaggtccaggactcttcaccgatatcggcaagaaagccaaagatctgttgacg 120
||||| || ||||| ||||| ||| |||| ||||| || | || |||||||||||||||
Sbjct: 1 atgagtaagggtccgggactattcgccgacatcggaaaatatgcgaaagatctgttgacg 60
Query: 121 agagactacaattccgatcagaagttcagtatctccacttacagtgcctccggcgtggcc 180
||||| |||| | |||||||||| ||||||||||||||| |||||| ||||||||| ||
Sbjct: 61 agagattacagtaccgatcagaaattcagtatctccactaacagtgtctccggcgtcgct 120
Query: 181 cttacgtctactgctctgaagaaaggaggagttcatgctgctgatgttgccacccaatac 240
||||| || |||||||| ||||| |||| | | ||||||||| |||||||||| ||||||
Sbjct: 121 cttacttccactgctctcaagaatggagtactacatgctgctaatgttgccacacaatac 180
Query: 241 aagtaca 247
|||||||
Sbjct: 181 aagtaca 187
Score = 60.0 bits (30), Expect = 5e-08
Identities = 165/210 (78%)
Strand = Plus / Plus
Query: 519 aactttcaccaagtacaatgccgggatcagtgtgacaaaaccagatgcttgcctctccat 578
||||||||| |||||||| | ||| ||||||| ||||| |||||| || |||||||
Sbjct: 309 aactttcacaaagtacaacgtcggagtcagtgtcacaaagccagatcaatgtgtctccat 368
Query: 579 aatattgggagacaaaggagactcactcaaagcatcataccttcatcactttgatgaatt 638
|||||||||||| |||||||| || ||||||| || || | || || | ||||| |
Sbjct: 369 aatattgggagataaaggagattcgatcaaagcctcttatgtatattacctagatgagtc 428
Query: 639 taagagaaccgcagcagttggtgaggtttacaggaagttctcgacaaatgaaaacacgat 698
| ||||| |||| ||||||| |||||| |||||| |||| || ||||| | || |
Sbjct: 429 gacgagaagcgcaacagttggagaggttatcaggaaaatctcaactaatgagacaacagt 488
Query: 699 aacggttggtggattgtatgcgattgatca 728
||| |||||||||||||||||| |||||||
Sbjct: 489 aactgttggtggattgtatgcggttgatca 518
>At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin II [Solanum
tuberosum] GI:515360; contains Pfam profile PF01459:
Eukaryotic porin
Length = 1301
Score = 48.1 bits (24), Expect = 2e-04
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 86 ccgatatcggcaagaaagccaaagatct 113
||||||| ||||||||||||||||||||
Sbjct: 287 ccgatattggcaagaaagccaaagatct 314
>At5g15090.1 68418.m01768 porin, putative / voltage-dependent anion-selective
channel protein, putative similar to SP|P42055 34 kDa
outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin; identical to cDNA
voltage-dependent anion-selective channel protein
GI:4006940
Length = 1254
Score = 46.1 bits (23), Expect = 7e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 67 aaaggtccaggactcttcaccgatatcggcaagaaagccaaagatct 113
|||||||||||||||| ||| || |||||||| || |||| ||||||
Sbjct: 90 aaaggtccaggactctacactgaaatcggcaaaaaggccagagatct 136
>At1g06950.1 68414.m00738 chloroplast inner envelope protein-related similar to
chloroplast inner envelope protein GI:1495767 from [Pisum
sativum]
Length = 3301
Score = 42.1 bits (21), Expect = 0.011
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 927 ctacttttctcgtatgctctc 947
|||||||||||||||||||||
Sbjct: 1150 ctacttttctcgtatgctctc 1130
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,963
Number of Sequences: 29161
Number of extensions: 42963
Number of successful extensions: 1259
Number of sequences better than 10.0: 57
length of query: 1182
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1164
effective length of database: 43,533,334
effective search space: 50672800776
effective search space used: 50672800776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)