BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.18067.C1
(616 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67490.1 68418.m08511 expressed protein 1158 0.0
At3g04430.1 68416.m00469 no apical meristem (NAM) family pr... 74 2e-12
At3g61120.1 68416.m06840 MADS-box protein (AGL13) 58 9e-08
At4g18890.1 68417.m02785 brassinosteroid signalling positiv... 52 6e-06
At3g28980.1 68416.m03622 expressed protein 52 6e-06
>At5g67490.1 68418.m08511 expressed protein
Length = 800
Score = 1158 bits (584), Expect = 0.0
Identities = 587/588 (99%)
Strand = Plus / Plus
Query: 1 aaaccgtgaaggtcggatctctttcttgatttggccgacacatctgatctaacaatggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaaccgtgaaggtcggatctctttcttgatttggccgacacatctgatctaacaatggcg 264
Query: 61 acgaacaacatcgtacgtttgatcgctccaagccgatccgtctcctctagattcctcgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acgaacaacatcgtacgtttgatcgctccaagccgatccgtctcctctagattcctcgag 324
Query: 121 ccagtgtcacggtttctaagctccggtacacctcctccgccgcaagatccatctccgaat 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ccagtgtcacggtttctaagctccggtacacctcctccgccgcaagctccatctccgaat 384
Query: 181 caggatctgaaccgggacgtgaagccagatcagaatcttcaacagaatctgcagatgcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggatctgaaccgggacgtgaagccagatcagaatcttcaacagaatctgcagatgcag 444
Query: 241 aaggaagaagaagaggaaggagaaggtggtggaggtggagagtttgtgaacgaagatact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggaagaagaagaggaaggagaaggtggtggaggtggagagtttgtgaacgaagatact 504
Query: 301 ggtgagattggagggcctagaggtcctgaaccgactcggtacggcgattgggaacaacgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtgagattggagggcctagaggtcctgaaccgactcggtacggcgattgggaacaacgt 564
Query: 361 ggtcgatgctctgatttctgagaggattcatgtatccctgtgttttagcttgttcttata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtcgatgctctgatttctgagaggattcatgtatccctgtgttttagcttgttcttata 624
Query: 421 tatttctgggaaaaatggaaataaattcgttttatgtgtttatgtatttgcaaaataatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatttctgggaaaaatggaaataaattcgttttatgtgtttatgtatttgcaaaataatg 684
Query: 481 gagaaaatggaagaaaatgtagtagaacttcaaattcgttgcctttatttggatcatcat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagaaaatggaagaaaatgtagtagaacttcaaattcgttgcctttatttggatcatcat 744
Query: 541 tctctggtgatcttgttattccagtaatagttaataagttcttcctca 588
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctctggtgatcttgttattccagtaatagttaataagttcttcctca 792
>At3g04430.1 68416.m00469 no apical meristem (NAM) family protein similar to
CUC1 (GP:12060422) {Arabidopsis thaliana}
Length = 597
Score = 73.8 bits (37), Expect = 2e-12
Identities = 50/53 (94%), Gaps = 1/53 (1%)
Strand = Plus / Minus
Query: 532 gatcatcattctctggtgatcttgttattccagtaatagttaataagttcttc 584
||||||||||||||| |||||||||||||| ||||||||||||| ||||||||
Sbjct: 82 gatcatcattctctg-tgatcttgttattcaagtaatagttaatgagttcttc 31
>At3g61120.1 68416.m06840 MADS-box protein (AGL13)
Length = 915
Score = 58.0 bits (29), Expect = 9e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 588 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 616
|||||||||||||||||||||||||||||
Sbjct: 864 aaaaaaaaaaagaaaaaaaaaaaaaaaaa 836
>At4g18890.1 68417.m02785 brassinosteroid signalling positive regulator-related
contains similarity to BZR1 protein [Arabidopsis
thaliana] gi|20270971|gb|AAM18490
Length = 1303
Score = 52.0 bits (26), Expect = 6e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 587 caaaaaaaaaaagaaaaaaaaaaaaaaaaa 616
||||||||||||||||||||||||| ||||
Sbjct: 1183 caaaaaaaaaaagaaaaaaaaaaaagaaaa 1154
>At3g28980.1 68416.m03622 expressed protein
Length = 1628
Score = 52.0 bits (26), Expect = 6e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 580 tcttcctcaaaaaaaaaaagaaaaaaaaaa 609
||||||||||||||||||| ||||||||||
Sbjct: 18 tcttcctcaaaaaaaaaaaaaaaaaaaaaa 47
Score = 36.2 bits (18), Expect = 0.34
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 594 aaaaagaaaaaaaaaaaaaaaa 615
||||| ||||||||||||||||
Sbjct: 26 aaaaaaaaaaaaaaaaaaaaaa 47
Score = 36.2 bits (18), Expect = 0.34
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 592 aaaaaaagaaaaaaaaaaaaaa 613
||||||| ||||||||||||||
Sbjct: 26 aaaaaaaaaaaaaaaaaaaaaa 47
Score = 36.2 bits (18), Expect = 0.34
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 595 aaaagaaaaaaaaaaaaaaaaa 616
|||| |||||||||||||||||
Sbjct: 26 aaaaaaaaaaaaaaaaaaaaaa 47
Score = 36.2 bits (18), Expect = 0.34
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 593 aaaaaagaaaaaaaaaaaaaaa 614
|||||| |||||||||||||||
Sbjct: 26 aaaaaaaaaaaaaaaaaaaaaa 47
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,900
Number of Sequences: 29161
Number of extensions: 60900
Number of successful extensions: 13015
Number of sequences better than 10.0: 907
length of query: 616
length of database: 44,058,232
effective HSP length: 17
effective length of query: 599
effective length of database: 43,562,495
effective search space: 26093934505
effective search space used: 26093934505
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)