BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CF652860.f
(111 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86214 protein T6D22.2 [imported] - Arabidopsis thalia... 50 1e-05
emb|CAA11705.1| elongation factor 1 alpha subunit [Malus x ... 50 1e-05
pir||S08534 translation elongation factor eEF-1 alpha chain... 50 1e-05
gb|AAN31833.1| putative translation elongation factor eEF-1... 50 1e-05
dbj|BAA09709.1| elongation factor-1 alpha [Nicotiana tabacum] 50 1e-05
sp|P43643|EF1A_TOBAC ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA)... 50 1e-05
gb|AAK25877.1| putative translation elongation factor eEF-1... 50 1e-05
ref|NP_200847.1| elongation factor 1-alpha / EF-1-alpha [Ar... 50 1e-05
gb|AAL57653.1| At1g07930/T6D22_3 [Arabidopsis thaliana] 50 1e-05
gb|AAK32834.1| At1g07930/T6D22_3 [Arabidopsis thaliana]|gi|... 50 1e-05
>pir||F86214 protein T6D22.2 [imported] - Arabidopsis
thaliana|gi|8778823|gb|AAF79822.1| T6D22.2 [Arabidopsis
thaliana]
Length = 967
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 43 MGKEKFHINIVVIGHVDSGKSTT 111
MGKEKFHINIVVIGHVDSGKSTT
Sbjct: 519 MGKEKFHINIVVIGHVDSGKSTT 541
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 43 MGKEKFHINIVVIGHVDSGKSTT 111
MGKEKFHINIVVIGHVDSGKSTT
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTT 23
>emb|CAA11705.1| elongation factor 1 alpha subunit [Malus x domestica]
Length = 447
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 43 MGKEKFHINIVVIGHVDSGKSTT 111
MGKEKFHINIVVIGHVDSGKSTT
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTT 23
>pir||S08534 translation elongation factor eEF-1 alpha chain (gene A4) -
Arabidopsis thaliana|gi|295789|emb|CAA34456.1|
elongation factor 1-alpha [Arabidopsis thaliana]
Length = 449
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 43 MGKEKFHINIVVIGHVDSGKSTT 111
MGKEKFHINIVVIGHVDSGKSTT
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTT 23
>gb|AAN31833.1| putative translation elongation factor eEF-1 alpha chain (gene A4)
[Arabidopsis thaliana]
Length = 449
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 43 MGKEKFHINIVVIGHVDSGKSTT 111
MGKEKFHINIVVIGHVDSGKSTT
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTT 23
>dbj|BAA09709.1| elongation factor-1 alpha [Nicotiana tabacum]
Length = 447
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 43 MGKEKFHINIVVIGHVDSGKSTT 111
MGKEKFHINIVVIGHVDSGKSTT
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTT 23
>sp|P43643|EF1A_TOBAC ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) (VITRONECTIN-LIKE ADHESION
PROTEIN 1) (PVN1)|gi|439577|gb|AAA20836.1|
vitronectin-like adhesion protein
Length = 447
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 43 MGKEKFHINIVVIGHVDSGKSTT 111
MGKEKFHINIVVIGHVDSGKSTT
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTT 23
>gb|AAK25877.1| putative translation elongation factor eEF-1 alpha chain A4
[Arabidopsis thaliana]
Length = 449
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 43 MGKEKFHINIVVIGHVDSGKSTT 111
MGKEKFHINIVVIGHVDSGKSTT
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTT 23
>ref|NP_200847.1| elongation factor 1-alpha / EF-1-alpha [Arabidopsis
thaliana]|gi|18390827|ref|NP_563799.1| elongation factor
1-alpha / EF-1-alpha [Arabidopsis
thaliana]|gi|18390829|ref|NP_563800.1| elongation factor
1-alpha / EF-1-alpha [Arabidopsis
thaliana]|gi|18390831|ref|NP_563801.1| elongation factor
1-alpha / EF-1-alpha [Arabidopsis
thaliana]|gi|119143|sp|P13905|EF1A_ARATH Elongation
factor 1-alpha (EF-1-alpha)|gi|81606|pir||S06724
translation elongation factor eEF-1 alpha chain -
Arabidopsis thaliana|gi|295788|emb|CAA34453.1|
elongation factor 1-alpha [Arabidopsis
thaliana]|gi|1369927|emb|CAA34454.1| elongation factor
1-alpha [Arabidopsis
thaliana]|gi|1369928|emb|CAA34455.1| elongation factor
1-alpha [Arabidopsis thaliana]|gi|1532172|gb|AAB07882.1|
EF-1alpha-A1 [Arabidopsis
thaliana]|gi|1532173|gb|AAB07883.1| EF-1alpha-A2
[Arabidopsis thaliana]|gi|1532174|gb|AAB07884.1|
EF-1alpha-A3 [Arabidopsis
thaliana]|gi|8778848|gb|AAF79847.1| T6D22.3 [Arabidopsis
thaliana]|gi|9757743|dbj|BAB08224.1| elongation factor
1-alpha (EF-1-alpha) [Arabidopsis
thaliana]|gi|14517496|gb|AAK62638.1| At1g07940/T6D22_14
[Arabidopsis thaliana]|gi|16649069|gb|AAL24386.1|
elongation factor 1-alpha (EF-1-alpha) [Arabidopsis
thaliana]|gi|16930465|gb|AAL31918.1| AT5g60390/muf9_40
[Arabidopsis thaliana]|gi|16974554|gb|AAL31193.1|
AT5g60390/muf9_40 [Arabidopsis
thaliana]|gi|19347769|gb|AAL86336.1| putative elongation
factor 1-alpha [Arabidopsis
thaliana]|gi|21593941|gb|AAM65897.1| elongation factor
1-alpha [Arabidopsis
thaliana]|gi|21689837|gb|AAM67562.1| putative elongation
factor 1-alpha [Arabidopsis
thaliana]|gi|22136248|gb|AAM91202.1| elongation factor
1-alpha [Arabidopsis
thaliana]|gi|22137034|gb|AAM91362.1| At5g60390/muf9_40
[Arabidopsis thaliana]|gi|22655292|gb|AAM98236.1|
unknown protein [Arabidopsis
thaliana]|gi|22655300|gb|AAM98240.1| unknown protein
[Arabidopsis thaliana]|gi|23308389|gb|AAN18164.1|
At1g07940/T6D22_14 [Arabidopsis
thaliana]|gi|27311635|gb|AAO00783.1| elongation factor
1-alpha [Arabidopsis
thaliana]|gi|27311673|gb|AAO00802.1| elongation factor
1-alpha [Arabidopsis
thaliana]|gi|27311809|gb|AAO00870.1| Unknown protein
[Arabidopsis thaliana]|gi|28058707|gb|AAO29944.1|
Unknown protein [Arabidopsis
thaliana]|gi|30102518|gb|AAP21177.1| At5g60390/muf9_40
[Arabidopsis thaliana]
Length = 449
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 43 MGKEKFHINIVVIGHVDSGKSTT 111
MGKEKFHINIVVIGHVDSGKSTT
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTT 23
>gb|AAL57653.1| At1g07930/T6D22_3 [Arabidopsis thaliana]
Length = 449
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 43 MGKEKFHINIVVIGHVDSGKSTT 111
MGKEKFHINIVVIGHVDSGKSTT
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTT 23
>gb|AAK32834.1| At1g07930/T6D22_3 [Arabidopsis thaliana]|gi|16323344|gb|AAL15385.1|
At1g07930/T6D22_3 [Arabidopsis thaliana]
Length = 449
Score = 50.4 bits (119), Expect = 1e-05
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = +1
Query: 43 MGKEKFHINIVVIGHVDSGKSTT 111
MGKEKFHINIVVIGHVDSGKSTT
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTT 23
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 12
effective length of database: 606,969,342
effective search space used: 14567264208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)