BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AI994535.x
         (546 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAQ08886.1|  RAP250 [Mus musculus]                              32   6.8  
ref|NP_062799.1|  nuclear receptor coactivator 6; PPAR inter...    32   6.8  
dbj|BAC97889.1|  mKIAA0181 protein [Mus musculus]                  32   6.8  
ref|XP_342553.1|  nuclear receptor coactivator 6 [Rattus nor...    32   6.8  

>gb|AAQ08886.1| RAP250 [Mus musculus]
          Length = 1753

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 17/39 (43%), Positives = 22/39 (55%)
 Frame = +3

Query: 399  HHYISQNSIKGRAPQPDSNLWSANTQGTTPQTFPPNQVP 515
            H  +SQN +    P+P  +  SA TQG TPQ  P N +P
Sbjct: 942  HLVVSQNQLMMTGPKPGPSPLSA-TQGATPQQPPVNSLP 979



>ref|NP_062799.1| nuclear receptor coactivator 6; PPAR interacting protein PRIP;
            thyroid hormone receptor binding protein; peroxisome
            proliferator-activated receptor interacting protein,PRIP;
            nuclear receptor-activating protein 250 [Mus
            musculus]|gi|28380084|sp|Q9JL19|NCO6_MOUSE Nuclear
            receptor coactivator 6 (Amplified in breast cancer-3
            protein) (Cancer-amplified transcriptional coactivator
            ASC-2) (Activating signal cointegrator-2) (ASC-2)
            (Peroxisome proliferator-activated receptor-interacting
            protein) (PPAR-interacting protein) (Nuclear
            receptor-activating protein, 250 kDa) (Nuclear receptor
            coactivator RAP250) (NRC) (Thyroid hormone receptor
            binding protein)|gi|7025382|gb|AAF35860.1| PPAR
            interacting protein PRIP [Mus musculus]
          Length = 2067

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 17/39 (43%), Positives = 22/39 (55%)
 Frame = +3

Query: 399  HHYISQNSIKGRAPQPDSNLWSANTQGTTPQTFPPNQVP 515
            H  +SQN +    P+P  +  SA TQG TPQ  P N +P
Sbjct: 1156 HLVVSQNQLMMTGPKPGPSPLSA-TQGATPQQPPVNSLP 1193



>dbj|BAC97889.1| mKIAA0181 protein [Mus musculus]
          Length = 1169

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 17/39 (43%), Positives = 22/39 (55%)
 Frame = +3

Query: 399 HHYISQNSIKGRAPQPDSNLWSANTQGTTPQTFPPNQVP 515
           H  +SQN +    P+P  +  SA TQG TPQ  P N +P
Sbjct: 258 HLVVSQNQLMMTGPKPGPSPLSA-TQGATPQQPPVNSLP 295



>ref|XP_342553.1| nuclear receptor coactivator 6 [Rattus norvegicus]
          Length = 1844

 Score = 32.0 bits (71), Expect = 6.8
 Identities = 17/39 (43%), Positives = 22/39 (55%)
 Frame = +3

Query: 399  HHYISQNSIKGRAPQPDSNLWSANTQGTTPQTFPPNQVP 515
            H  +SQN +    P+P  +  SA TQG TPQ  P N +P
Sbjct: 1056 HLVVSQNQLMMTGPKPGPSPLSA-TQGATPQQPPVNSLP 1093



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 118
effective length of database: 406,067,754
effective search space used: 25582268502
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)