BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CB261700.f
(119 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198657.1| ribulose bisphosphate carboxylase small ch... 69 4e-11
pir||RKMUB3 ribulose-bisphosphate carboxylase (EC 4.1.1.39)... 69 4e-11
ref|NP_198658.1| ribulose bisphosphate carboxylase small ch... 69 4e-11
pir||RKMUB2 ribulose-bisphosphate carboxylase (EC 4.1.1.39)... 69 4e-11
ref|NP_198659.1| ribulose bisphosphate carboxylase small ch... 67 8e-11
sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small... 63 2e-09
gb|AAG40356.1| At1g67090 [Arabidopsis thaliana] 63 2e-09
ref|NP_176880.1| ribulose bisphosphate carboxylase small ch... 63 2e-09
gb|AAK49590.1| F1O19.10/F1O19.10 [Arabidopsis thaliana] 63 2e-09
pir||RKMUA1 ribulose-bisphosphate carboxylase (EC 4.1.1.39)... 62 3e-09
>ref|NP_198657.1| ribulose bisphosphate carboxylase small chain 3B / RuBisCO small
subunit 3B (RBCS-3B) (ATS3B) [Arabidopsis
thaliana]|gi|20141686|sp|P10798|RBS4_ARATH Ribulose
bisphosphate carboxylase small chain 3B, chloroplast
precursor (RuBisCO small subunit
3B)|gi|9758819|dbj|BAB09353.1| ribulose bisphosphate
carboxylase small chain 3b precursor (RuBisCO small
subunit 3b) [Arabidopsis
thaliana]|gi|13430424|gb|AAK25834.1| putative ribulose
bisphosphate carboxylase small chain 3b precursor
[Arabidopsis thaliana]|gi|15293183|gb|AAK93702.1|
putative RuBisCO small 3b subunit precursor [Arabidopsis
thaliana]|gi|15294246|gb|AAK95300.1| F1O19.10/F1O19.10
[Arabidopsis thaliana]|gi|15450944|gb|AAK96743.1|
ribulose bisphosphate carboxylase small chain 3b
precursor (RuBisCO small subunit 3b) [Arabidopsis
thaliana]|gi|17978793|gb|AAL47390.1| ribulose
bisphosphate carboxylase small chain 3b precursor
(RuBisCO small subunit 3b) [Arabidopsis
thaliana]|gi|18087561|gb|AAL58912.1| At5g38410/F1O19.10
[Arabidopsis thaliana]|gi|20466117|gb|AAM19980.1|
At5g38410/F1O19.10 [Arabidopsis
thaliana]|gi|23397160|gb|AAN31863.1| putative ribulose
bisphosphate carboxylase small chain 3b precursor
(RuBisCO small subunit 3b) [Arabidopsis thaliana]
Length = 181
Score = 68.6 bits (166), Expect = 4e-11
Identities = 31/32 (96%), Positives = 32/32 (99%)
Frame = +1
Query: 1 PGAFIRIIGYDNTRQVQCISFIAYKPPSFTEA 96
PGAFIRIIG+DNTRQVQCISFIAYKPPSFTEA
Sbjct: 150 PGAFIRIIGFDNTRQVQCISFIAYKPPSFTEA 181
>pir||RKMUB3 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain B3
precursor - Arabidopsis
thaliana|gi|16195|emb|CAA32702.1| ribulose bisphosphate
carboxylase [Arabidopsis thaliana]
Length = 181
Score = 68.6 bits (166), Expect = 4e-11
Identities = 31/32 (96%), Positives = 32/32 (99%)
Frame = +1
Query: 1 PGAFIRIIGYDNTRQVQCISFIAYKPPSFTEA 96
PGAFIRIIG+DNTRQVQCISFIAYKPPSFTEA
Sbjct: 150 PGAFIRIIGFDNTRQVQCISFIAYKPPSFTEA 181
>ref|NP_198658.1| ribulose bisphosphate carboxylase small chain 2B / RuBisCO small
subunit 2B (RBCS-2B) (ATS2B) [Arabidopsis
thaliana]|gi|27735224|sp|P10797|RBS3_ARATH Ribulose
bisphosphate carboxylase small chain 2B, chloroplast
precursor (RuBisCO small subunit
2B)|gi|9758820|dbj|BAB09354.1| ribulose bisphosphate
carboxylase small chain 2b precursor (RuBisCO small
subunit 2b) [Arabidopsis
thaliana]|gi|16649139|gb|AAL24421.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|17064722|gb|AAL32515.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|17064764|gb|AAL32536.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|17064934|gb|AAL32621.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|20259880|gb|AAM13287.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|25083689|gb|AAN72105.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|27311897|gb|AAO00914.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis
thaliana]|gi|28058980|gb|AAO29974.1| ribulose
bisphosphate carboxylase small chain 2b precursor
(RuBisCO small subunit 2b) [Arabidopsis thaliana]
Length = 181
Score = 68.6 bits (166), Expect = 4e-11
Identities = 31/32 (96%), Positives = 32/32 (99%)
Frame = +1
Query: 1 PGAFIRIIGYDNTRQVQCISFIAYKPPSFTEA 96
PGAFIRIIG+DNTRQVQCISFIAYKPPSFTEA
Sbjct: 150 PGAFIRIIGFDNTRQVQCISFIAYKPPSFTEA 181
>pir||RKMUB2 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain B2
precursor - Arabidopsis
thaliana|gi|16194|emb|CAA32701.1| ribulose bisphosphate
carboxylase [Arabidopsis thaliana]
Length = 181
Score = 68.6 bits (166), Expect = 4e-11
Identities = 31/32 (96%), Positives = 32/32 (99%)
Frame = +1
Query: 1 PGAFIRIIGYDNTRQVQCISFIAYKPPSFTEA 96
PGAFIRIIG+DNTRQVQCISFIAYKPPSFTEA
Sbjct: 150 PGAFIRIIGFDNTRQVQCISFIAYKPPSFTEA 181
>ref|NP_198659.1| ribulose bisphosphate carboxylase small chain 1B / RuBisCO small
subunit 1B (RBCS-1B) (ATS1B) [Arabidopsis
thaliana]|gi|132090|sp|P10796|RBS2_ARATH Ribulose
bisphosphate carboxylase small chain 1B, chloroplast
precursor (RuBisCO small subunit
1B)|gi|68062|pir||RKMUB1 ribulose-bisphosphate
carboxylase (EC 4.1.1.39) small chain B1 precursor -
Arabidopsis thaliana|gi|16193|emb|CAA32700.1| ribulose
bisphosphate carboxylase [Arabidopsis
thaliana]|gi|9758821|dbj|BAB09355.1| ribulose
bisphosphate carboxylase small chain 1b precursor
(RuBisCO small subunit 1b) [Arabidopsis
thaliana]|gi|15294184|gb|AAK95269.1| F1O19.10/F1O19.10
[Arabidopsis thaliana]|gi|23505787|gb|AAN28753.1|
At5g38430/F1O19.10 [Arabidopsis thaliana]
Length = 181
Score = 67.4 bits (163), Expect = 8e-11
Identities = 30/32 (93%), Positives = 32/32 (99%)
Frame = +1
Query: 1 PGAFIRIIGYDNTRQVQCISFIAYKPPSFTEA 96
PGAFIRIIG+DNTRQVQCISFIAYKPPSFT+A
Sbjct: 150 PGAFIRIIGFDNTRQVQCISFIAYKPPSFTDA 181
>sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chain (RuBisCO small
subunit)|gi|81724|pir||S06772 ribulose-bisphosphate
carboxylase (EC 4.1.1.39) small chain (clone SRBCS1) -
white mustard (fragment)|gi|1345574|emb|CAA34458.1|
unnamed protein product [Sinapis alba]
Length = 82
Score = 63.2 bits (152), Expect = 2e-09
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +1
Query: 1 PGAFIRIIGYDNTRQVQCISFIAYKPPSFTEA 96
P AFIRIIG+DN RQVQCISFIAYKPPSFT+A
Sbjct: 51 PNAFIRIIGFDNNRQVQCISFIAYKPPSFTDA 82
>gb|AAG40356.1| At1g67090 [Arabidopsis thaliana]
Length = 180
Score = 62.8 bits (151), Expect = 2e-09
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +1
Query: 1 PGAFIRIIGYDNTRQVQCISFIAYKPPSFT 90
P AFIRIIG+DNTRQVQCISFIAYKPPSFT
Sbjct: 150 PNAFIRIIGFDNTRQVQCISFIAYKPPSFT 179
>ref|NP_176880.1| ribulose bisphosphate carboxylase small chain 1A / RuBisCO small
subunit 1A (RBCS-1A) (ATS1A) [Arabidopsis
thaliana]|gi|27735223|sp|P10795|RBS1_ARATH Ribulose
bisphosphate carboxylase small chain 1A, chloroplast
precursor (RuBisCO small subunit
1A)|gi|25291028|pir||G96694 hypothetical protein F5A8.1
[imported] - Arabidopsis
thaliana|gi|4204274|gb|AAD10655.1| ribulose bisphosphate
carboxylase, small subunit [Arabidopsis
thaliana]|gi|11762170|gb|AAG40363.1| 000C10C11
[Arabidopsis thaliana]|gi|15294200|gb|AAK95277.1|
F1O19.10/F1O19.10 [Arabidopsis
thaliana]|gi|15451002|gb|AAK96772.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|15809842|gb|AAL06849.1| At1g67090/F1O19.10
[Arabidopsis thaliana]|gi|16604426|gb|AAL24219.1|
At1g67090/F1O19.10 [Arabidopsis
thaliana]|gi|16649141|gb|AAL24422.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|17065072|gb|AAL32690.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|17065270|gb|AAL32789.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|17473628|gb|AAL38277.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|20260064|gb|AAM13379.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|20260080|gb|AAM13387.1| ribulose
bisphosphate carboxylase, small subunit [Arabidopsis
thaliana]|gi|20453287|gb|AAM19882.1| At1g67090/F1O19.10
[Arabidopsis thaliana]|gi|23198308|gb|AAN15681.1|
ribulose bisphosphate carboxylase, small subunit
[Arabidopsis thaliana]|gi|25083492|gb|AAN72087.1|
ribulose bisphosphate carboxylase, small subunit
[Arabidopsis thaliana]
Length = 180
Score = 62.8 bits (151), Expect = 2e-09
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +1
Query: 1 PGAFIRIIGYDNTRQVQCISFIAYKPPSFT 90
P AFIRIIG+DNTRQVQCISFIAYKPPSFT
Sbjct: 150 PNAFIRIIGFDNTRQVQCISFIAYKPPSFT 179
>gb|AAK49590.1| F1O19.10/F1O19.10 [Arabidopsis thaliana]
Length = 125
Score = 62.8 bits (151), Expect = 2e-09
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +1
Query: 1 PGAFIRIIGYDNTRQVQCISFIAYKPPSFT 90
P AFIRIIG+DNTRQVQCISFIAYKPPSFT
Sbjct: 95 PNAFIRIIGFDNTRQVQCISFIAYKPPSFT 124
>pir||RKMUA1 ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain A1
precursor - Arabidopsis thaliana
Length = 180
Score = 62.4 bits (150), Expect = 3e-09
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 1 PGAFIRIIGYDNTRQVQCISFIAYKPPSFT 90
P AFIRIIG+DNTRQVQCISF+AYKPPSFT
Sbjct: 150 PNAFIRIIGFDNTRQVQCISFVAYKPPSFT 179
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 15
effective length of database: 601,283,448
effective search space used: 14430802752
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)