BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV536970.f
(120 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79625.1| F5M15.5 [Arabidopsis thaliana]|gi|8886925|gb... 86 2e-16
gb|AAM65021.1| unknown [Arabidopsis thaliana] 86 2e-16
pir||S71112 catalase (EC 1.11.1.6) 3 - Arabidopsis thaliana 86 2e-16
pir||T51752 catalase (EC 1.11.1.6) [similarity] - Arabidops... 86 2e-16
gb|AAC49807.1| catalase 3 [Arabidopsis thaliana]|gi|2511726... 86 2e-16
gb|AAD30291.2| catalase 2 [Raphanus sativus] 86 2e-16
ref|NP_973873.1| catalase 3 (SEN2) [Arabidopsis thaliana] 86 2e-16
gb|AAD30292.1| catalase 3 [Raphanus sativus] 86 2e-16
ref|NP_564120.1| catalase 3 (SEN2) [Arabidopsis thaliana]|g... 86 2e-16
gb|AAB53101.2| catalase [Brassica napus] 86 2e-16
>gb|AAF79625.1| F5M15.5 [Arabidopsis thaliana]|gi|8886925|gb|AAF80611.1| F2D10.11
[Arabidopsis thaliana]
Length = 1013
Score = 85.9 bits (211), Expect = 2e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 1 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 45 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 84
Score = 65.9 bits (159), Expect = 2e-10
Identities = 29/39 (74%), Positives = 35/39 (89%)
Frame = +1
Query: 4 RPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
RPSSA+++PF+TTN GAPV NN SSLT+G RGP+LLEDY
Sbjct: 528 RPSSAHDSPFFTTNSGAPVWNNNSSLTVGTRGPILLEDY 566
>gb|AAM65021.1| unknown [Arabidopsis thaliana]
Length = 492
Score = 85.9 bits (211), Expect = 2e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 1 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45
>pir||S71112 catalase (EC 1.11.1.6) 3 - Arabidopsis thaliana
Length = 492
Score = 85.9 bits (211), Expect = 2e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 1 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45
>pir||T51752 catalase (EC 1.11.1.6) [similarity] - Arabidopsis thaliana
(fragment)|gi|3158370|gb|AAC39465.1| catalase 3
[Arabidopsis thaliana]
Length = 115
Score = 85.9 bits (211), Expect = 2e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 1 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45
>gb|AAC49807.1| catalase 3 [Arabidopsis thaliana]|gi|2511726|gb|AAC17732.1|
catalase 3 [Arabidopsis thaliana]
Length = 492
Score = 85.9 bits (211), Expect = 2e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 1 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45
>gb|AAD30291.2| catalase 2 [Raphanus sativus]
Length = 492
Score = 85.9 bits (211), Expect = 2e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 1 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45
>ref|NP_973873.1| catalase 3 (SEN2) [Arabidopsis thaliana]
Length = 427
Score = 85.9 bits (211), Expect = 2e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 1 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45
>gb|AAD30292.1| catalase 3 [Raphanus sativus]
Length = 492
Score = 85.9 bits (211), Expect = 2e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 1 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45
>ref|NP_564120.1| catalase 3 (SEN2) [Arabidopsis
thaliana]|gi|21903384|sp|Q42547|CAT3_ARATH Catalase
3|gi|15912339|gb|AAL08303.1| At1g20620/F5M15_4
[Arabidopsis thaliana]|gi|16604412|gb|AAL24212.1|
At1g20620/F5M15_4 [Arabidopsis thaliana]
Length = 492
Score = 85.9 bits (211), Expect = 2e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 1 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45
>gb|AAB53101.2| catalase [Brassica napus]
Length = 492
Score = 85.9 bits (211), Expect = 2e-16
Identities = 40/40 (100%), Positives = 40/40 (100%)
Frame = +1
Query: 1 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6 YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.310 0.133 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 15
effective length of database: 601,283,448
effective search space used: 14430802752
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)