BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.12383.C2
(1444 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21960.1 68417.m03178 peroxidase 42 (PER42) (P42) (PRXR1... 2859 0.0
At2g37130.1 68415.m04555 peroxidase 21 (PER21) (P21) (PRXR5... 56 9e-07
At4g28610.1 68417.m04091 myb family transcription factor, p... 40 0.051
At1g69760.1 68414.m08027 expressed protein 40 0.051
At2g43320.1 68415.m05386 expressed protein 38 0.20
>At4g21960.1 68417.m03178 peroxidase 42 (PER42) (P42) (PRXR1) identical to
SP|Q9SB81 Peroxidase 42 precursor (EC 1.11.1.7) (Atperox
P42) (PRXR1) (ATP1a/ATP1b) {Arabidopsis thaliana}
Length = 1481
Score = 2859 bits (1442), Expect = 0.0
Identities = 1442/1442 (100%)
Strand = Plus / Plus
Query: 3 aactcaagagtggtgtagtgagagaagaaagatagagaaaaaaaatgggaggcaaaggtg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 aactcaagagtggtgtagtgagagaagaaagatagagaaaaaaaatgggaggcaaaggtg 65
Query: 63 tgatgatggtggcgatactttgcctttgggcactctctgcaacatctgaagcagtaacag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tgatgatggtggcgatactttgcctttgggcactctctgcaacatctgaagcagtaacag 125
Query: 123 aggctgagccaggtttgatgatgaacttctacaaggacacgtgtcctcaggccgaagaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 aggctgagccaggtttgatgatgaacttctacaaggacacgtgtcctcaggccgaagaca 185
Query: 183 tcgtccgtgaacaagtcaaactcctctacaaacgccacaagaacaccgctttctcttggc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tcgtccgtgaacaagtcaaactcctctacaaacgccacaagaacaccgctttctcttggc 245
Query: 243 tccgtaacatcttccatgactgcgccgttgagtcatgtgatgcgtcgcttttgctggatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tccgtaacatcttccatgactgcgccgttgagtcatgtgatgcgtcgcttttgctggatt 305
Query: 303 cgacaagaagagagctaggagagaaagaacacgacaggagcttcggacttagaaacttta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cgacaagaagagagctaggagagaaagaacacgacaggagcttcggacttagaaacttta 365
Query: 363 ggtacatcgaggagatcaaggaagctctcgagagggagtgtcctggtgttgtctcatgtt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggtacatcgaggagatcaaggaagctctcgagagggagtgtcctggtgttgtctcatgtt 425
Query: 423 ctgacattctcgtcttgtccgcaagagaaggcatcgaagcagtaggaggaccttatattc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctgacattctcgtcttgtccgcaagagaaggcatcgaagcagtaggaggaccttatattc 485
Query: 483 ctttgaagacaggaaggagagatggacttaaaagcaggacggatatgctcgagtcatatc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctttgaagacaggaaggagagatggacttaaaagcaggacggatatgctcgagtcatatc 545
Query: 543 ttcccgaccacaacgagagtatctccgtcgttcttgaaaagttcaaatccatcggtatcg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttcccgaccacaacgagagtatctccgtcgttcttgaaaagttcaaatccatcggtatcg 605
Query: 603 acactcccggcctcgtcgccctcctagggtcacacagcgtgggaagaactcactgtgtca 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acactcccggcctcgtcgccctcctagggtcacacagcgtgggaagaactcactgtgtca 665
Query: 663 agctggtccatcgtttgtaccctgaggtggacccgtccttaaacccggaccacgtccctc 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 agctggtccatcgtttgtaccctgaggtggacccgtccttaaacccggaccacgtccctc 725
Query: 723 acatgctacacaagtgtcctgactcgatccctgacccaaaggcggtccagtacgtgcgta 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acatgctacacaagtgtcctgactcgatccctgacccaaaggcggtccagtacgtgcgta 785
Query: 783 acgaccgtggcacccccatggtgctagacaacaattactaccgtaacatcctagacaaca 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 acgaccgtggcacccccatggtgctagacaacaattactaccgtaacatcctagacaaca 845
Query: 843 agggtttgctccttgtggaccatcagctcgcacacgacaaacgaaccagaccaatcgtta 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 agggtttgctccttgtggaccatcagctcgcacacgacaaacgaaccagaccaatcgtta 905
Query: 903 agaagatggctaaggaccaggcctacttcttcaaggagttcactagggcaatccagatct 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 agaagatggctaaggaccaggcctacttcttcaaggagttcactagggcaatccagatct 965
Query: 963 tatccgagaacaaccccttgactggctctaagggtgagatcaggaagcaatgtaatctcg 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tatccgagaacaaccccttgactggctctaagggtgagatcaggaagcaatgtaatctcg 1025
Query: 1023 caaacaagaaccattgaagttggaaaaagtgagaaagacaggggctctggtgtgttgagt 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 caaacaagaaccattgaagttggaaaaagtgagaaagacaggggctctggtgtgttgagt 1085
Query: 1083 tctctgcttggtacgaaccaagatgaataaaaaaatcttttaagttaaatcaaagaaagg 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 tctctgcttggtacgaaccaagatgaataaaaaaatcttttaagttaaatcaaagaaagg 1145
Query: 1143 gtgatgatgaatacatcatggtagtgaccacctccttcttttgtgtgttcagccttaatg 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 gtgatgatgaatacatcatggtagtgaccacctccttcttttgtgtgttcagccttaatg 1205
Query: 1203 ctttaattatgatgttagtggctttgagttatttaatctaaatgttggctcttcgttgat 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 ctttaattatgatgttagtggctttgagttatttaatctaaatgttggctcttcgttgat 1265
Query: 1263 tttgggtttgtggtgggggtgatataatgataatggaaaggatgtatgatatgatggatg 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1266 tttgggtttgtggtgggggtgatataatgataatggaaaggatgtatgatatgatggatg 1325
Query: 1323 gtgttgggtatcatgtatgacgatgtaatgataagtaaacatgtccgaatcttttgataa 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1326 gtgttgggtatcatgtatgacgatgtaatgataagtaaacatgtccgaatcttttgataa 1385
Query: 1383 tttgttcaacatgcatggtatacataagtactgtgtatgggtgatatcgatctattttac 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 tttgttcaacatgcatggtatacataagtactgtgtatgggtgatatcgatctattttac 1445
Query: 1443 tg 1444
||
Sbjct: 1446 tg 1447
>At2g37130.1 68415.m04555 peroxidase 21 (PER21) (P21) (PRXR5) identical to
SP|Q42580 Peroxidase 21 precursor (EC 1.11.1.7) (Atperox
P21) (PRXR5) (ATP2a/ATP2b) {Arabidopsis thaliana}
Length = 1342
Score = 56.0 bits (28), Expect = 9e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 236 tcttggctccgtaacatcttccatgactgcgccgttgagtcatgtgatgcgtcgct 291
|||||||||||||| ||||||||||||| | ||| |||| ||||||||||||||
Sbjct: 241 tcttggctccgtaatctcttccatgactgtgtcgtcaagtcgtgtgatgcgtcgct 296
Score = 36.2 bits (18), Expect = 0.80
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 488 aagacaggaaggagagat 505
||||||||||||||||||
Sbjct: 496 aagacaggaaggagagat 513
>At4g28610.1 68417.m04091 myb family transcription factor, putative / phosphate
starvation response regulator, putative (PHR1) contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA phosphate starvation response
regulator 1 (phr1 gene) GI:15384675
Length = 1693
Score = 40.1 bits (20), Expect = 0.051
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 432 tcgtcttgtccgcaagagaa 451
||||||||||||||||||||
Sbjct: 55 tcgtcttgtccgcaagagaa 36
>At1g69760.1 68414.m08027 expressed protein
Length = 1449
Score = 40.1 bits (20), Expect = 0.051
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 gagaagaaagatagagaaaa 43
||||||||||||||||||||
Sbjct: 76 gagaagaaagatagagaaaa 57
>At2g43320.1 68415.m05386 expressed protein
Length = 1591
Score = 38.2 bits (19), Expect = 0.20
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 369 tcgaggagatcaaggaagctctc 391
|||||| ||||||||||||||||
Sbjct: 1044 tcgaggcgatcaaggaagctctc 1066
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,094
Number of Sequences: 29161
Number of extensions: 44094
Number of successful extensions: 964
Number of sequences better than 10.0: 30
length of query: 1444
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1426
effective length of database: 43,533,334
effective search space: 62078534284
effective search space used: 62078534284
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)