BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.11791.C2
(1914 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosy... 3699 0.0
At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /... 1330 0.0
At4g25640.1 68417.m03692 MATE efflux family protein similar... 46 0.001
At5g48385.1 68418.m05980 expressed protein 44 0.004
At5g15080.1 68418.m01767 protein kinase, putative similar t... 44 0.004
>At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-homocysteine
hydrolase / AdoHcyase (SAHH) identical to SP|O23255
Adenosylhomocysteinase (EC 3.3.1.1)
(S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
{Arabidopsis thaliana}; strong similarity to SP|P50248
Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
sylvestris}
Length = 1990
Score = 3699 bits (1866), Expect = 0.0
Identities = 1866/1866 (100%)
Strand = Plus / Plus
Query: 49 ctctctctctctctctctgcctcctttcggattcaaatctcagatctagctcaaccatgg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 ctctctctctctctctctgcctcctttcggattcaaatctcagatctagctcaaccatgg 73
Query: 109 cgttgctcgtcgagaagacctcaagtggccgtgaatacaaggtcaaagacatgtctcaag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 cgttgctcgtcgagaagacctcaagtggccgtgaatacaaggtcaaagacatgtctcaag 133
Query: 169 ccgatttcggtcgtctcgaactcgagctcgccgaagttgagatgcctggactcatggctt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ccgatttcggtcgtctcgaactcgagctcgccgaagttgagatgcctggactcatggctt 193
Query: 229 gtcgtaccgaattcggaccttctcagccattcaaaggcgctagaatcaccggatctcttc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gtcgtaccgaattcggaccttctcagccattcaaaggcgctagaatcaccggatctcttc 253
Query: 289 acatgaccatccaaaccgccgtactcatcgaaaccctaactgctctcggtgctgaagtca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 acatgaccatccaaaccgccgtactcatcgaaaccctaactgctctcggtgctgaagtca 313
Query: 349 gatggtgttcctgcaacatcttttccactcaagaccacgccgccgcagccatcgctcgtg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gatggtgttcctgcaacatcttttccactcaagaccacgccgccgcagccatcgctcgtg 373
Query: 409 actccgccgctgttttcgcctggaaaggtgagactcttcaggagtactggtggtgtaccg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 actccgccgctgttttcgcctggaaaggtgagactcttcaggagtactggtggtgtaccg 433
Query: 469 agcgtgctctagattggggtccaggtggtggtcctgatctgattgttgatgatggtggtg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agcgtgctctagattggggtccaggtggtggtcctgatctgattgttgatgatggtggtg 493
Query: 529 acgctactcttttgattcatgagggtgttaaagctgaggagatctttgagaagactggtc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 acgctactcttttgattcatgagggtgttaaagctgaggagatctttgagaagactggtc 553
Query: 589 aagttcctgatcctacttctactgataaccctgagtttcagatcgtgttgtctattatca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aagttcctgatcctacttctactgataaccctgagtttcagatcgtgttgtctattatca 613
Query: 649 aggaaggtcttcaagttgatcctaagaagtaccacaagatgaaggagagacttgttggtg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aggaaggtcttcaagttgatcctaagaagtaccacaagatgaaggagagacttgttggtg 673
Query: 709 tctctgaggaaactaccactggtgttaagaggctttaccagatgcagcaaaatggaactc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tctctgaggaaactaccactggtgttaagaggctttaccagatgcagcaaaatggaactc 733
Query: 769 ttttgttccctgccattaacgttaacgactctgtcaccaagagcaagttcgacaacttgt 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttttgttccctgccattaacgttaacgactctgtcaccaagagcaagttcgacaacttgt 793
Query: 829 atggttgccgtcactcactccctgatggtctcatgagggccactgatgtcatgatcgctg 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 atggttgccgtcactcactccctgatggtctcatgagggccactgatgtcatgatcgctg 853
Query: 889 gaaaggttgctgttatctgtggatatggtgatgttggaaagggttgtgctgctgccatga 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gaaaggttgctgttatctgtggatatggtgatgttggaaagggttgtgctgctgccatga 913
Query: 949 agactgctggtgctagagtcattgtgactgagattgatcccatctgtgcccttcaagctt 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 agactgctggtgctagagtcattgtgactgagattgatcccatctgtgcccttcaagctt 973
Query: 1009 tgatggaaggacttcaggttcttacccttgaggatgttgtctcagaagctgatatctttg 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 tgatggaaggacttcaggttcttacccttgaggatgttgtctcagaagctgatatctttg 1033
Query: 1069 tcaccaccaccggtaacaaagacatcatcatggtcgaccacatgaggaagatgaagaaca 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 tcaccaccaccggtaacaaagacatcatcatggtcgaccacatgaggaagatgaagaaca 1093
Query: 1129 acgctattgtgtgcaacattggtcactttgacaatgagattgacatgcttggacttgaga 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 acgctattgtgtgcaacattggtcactttgacaatgagattgacatgcttggacttgaga 1153
Query: 1189 cttaccctggtgtgaagcgtatcaccatcaagccacagactgacaggtgggtgttcccag 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 cttaccctggtgtgaagcgtatcaccatcaagccacagactgacaggtgggtgttcccag 1213
Query: 1249 agaccaaggctggaatcattgtcttggctgagggtcgtctgatgaacttgggttgtgcca 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 agaccaaggctggaatcattgtcttggctgagggtcgtctgatgaacttgggttgtgcca 1273
Query: 1309 ctggtcacccaagtttcgtgatgtcttgctctttcaccaaccaggtgattgcccagctcg 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 ctggtcacccaagtttcgtgatgtcttgctctttcaccaaccaggtgattgcccagctcg 1333
Query: 1369 agctctggaacgagaaagcaagcggaaagtacgagaagaaggtgtacgttcttcccaagc 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 agctctggaacgagaaagcaagcggaaagtacgagaagaaggtgtacgttcttcccaagc 1393
Query: 1429 atttggatgagaaggttgcattacttcacttgggcaagcttggagccaggcttacaaagc 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 atttggatgagaaggttgcattacttcacttgggcaagcttggagccaggcttacaaagc 1453
Query: 1489 tgtcaaaggaccaatctgactacgtcagcattccaattgagggaccatacaagcctcctc 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 tgtcaaaggaccaatctgactacgtcagcattccaattgagggaccatacaagcctcctc 1513
Query: 1549 actacaggtactgagagagagagagagtcgacaaagcggttcaggttcggatctacttgt 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 actacaggtactgagagagagagagagtcgacaaagcggttcaggttcggatctacttgt 1573
Query: 1609 ggttttgtgttgggttgtggtgggagagtggaacagtttgagatattggtcttctgatga 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1574 ggttttgtgttgggttgtggtgggagagtggaacagtttgagatattggtcttctgatga 1633
Query: 1669 agttgaccaaatatcagtattaataagggttattggcttttgaaggttgtgcttgttttc 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 agttgaccaaatatcagtattaataagggttattggcttttgaaggttgtgcttgttttc 1693
Query: 1729 tccatttttcatgaaacttaaattagtttttggtttagtttccctcttgattttattttg 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1694 tccatttttcatgaaacttaaattagtttttggtttagtttccctcttgattttattttg 1753
Query: 1789 tgtgttctgtttagcgttgtactcttcaaacaaatgagaaaccaaaaaaaaaggggaaac 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1754 tgtgttctgtttagcgttgtactcttcaaacaaatgagaaaccaaaaaaaaaggggaaac 1813
Query: 1849 ttgttttcggcatcccagtgttagcgacttttgttgaatgaatgtctcaaatgctcatct 1908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814 ttgttttcggcatcccagtgttagcgacttttgttgaatgaatgtctcaaatgctcatct 1873
Query: 1909 ttaata 1914
||||||
Sbjct: 1874 ttaata 1879
>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
S-adenosyl-L-homocysteine hydrolase, putative /
AdoHcyase, putative strong similarity to
SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
(S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
{Nicotiana sylvestris}; contains Pfam profile PF00670:
S-adenosyl-L-homocysteine hydrolase, NAD binding domain
Length = 1849
Score = 1330 bits (671), Expect = 0.0
Identities = 1269/1463 (86%), Gaps = 4/1463 (0%)
Strand = Plus / Plus
Query: 105 atggcgttgctcgtcgagaagacctcaagtggccgtgaatacaaggtcaaagacatgtct 164
||||| ||||| || ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 43 atggctttgcttgtagagaaaacctcaagtggccgtgaatacaaggtcaaggacatgtcc 102
Query: 165 caagccgatttcggtcgtctcgaactcgagctcgccgaagttgagatgcctggactcatg 224
|||||||| ||||| ||||||||| ||||||| |||||||| || ||||||||||| |
Sbjct: 103 caagccgacttcggccgtctcgaaatcgagctagccgaagtcgaaatgcctggacttgtc 162
Query: 225 gcttgtcgtaccgaattcggaccttctcagccattcaaaggcgctagaatcaccggatct 284
|||| ||||||||||||||| ||||||||| ||||||| || ||||||||||| |||
Sbjct: 163 tcttgcgttaccgaattcggaccatctcagccactcaaaggagcaagaatcaccggttct 222
Query: 285 cttcacatgaccatccaaaccgccgtactcatcgaaaccctaactgctctcggtgctgaa 344
|| |||||||| ||||||||||| || | ||||||||| |||| |||||||| ||||||
Sbjct: 223 ctccacatgacgatccaaaccgcggttttaatcgaaaccttaaccgctctcggcgctgaa 282
Query: 345 gtcagatggtgttcctgcaacatcttttccactcaagaccacgccgccgcagccatcgct 404
|||||||||||||| ||||||||||| |||||||||||||||||||| || || || |||
Sbjct: 283 gtcagatggtgttcttgcaacatcttctccactcaagaccacgccgcggccgctattgct 342
Query: 405 cgtgactccgccgctgttttcgcctggaaaggtgagactcttcaggagtactggtggtgt 464
||||| |||||||| || ||||| |||||||||||||||||||| || || |||||||||
Sbjct: 343 cgtgattccgccgcggtgttcgcttggaaaggtgagactcttcaagaatattggtggtgt 402
Query: 465 accgagcgtgctctagattggggtccaggtggtggtcctgatctgattgttgatgatggt 524
|| ||| | ||||| || |||||||| || |||||||||||||| || |||||||| |||
Sbjct: 403 acagagagagctcttgactggggtcctggaggtggtcctgatctcatcgttgatgacggt 462
Query: 525 ggtgacgctactcttttgattcatgagggtgttaaagctgaggagatctttgagaagact 584
||||| ||||| || ||||| ||||| || ||||||||||| |||||||||| |||| |
Sbjct: 463 ggtgatgctacactgttgatccatgaaggagttaaagctgaagagatctttgccaagaat 522
Query: 585 ggtcaagttcc-tgatcctacttctactgataaccctgagtttcagatcgtgttgtctat 643
||| | ||||| ||| || || ||||||||||| || |||||||||||||| |||||||
Sbjct: 523 ggt-acgttccctgacccgacctctactgataatcccgagtttcagatcgtcctgtctat 581
Query: 644 tatcaaggaaggtcttcaagttgatcctaagaagtaccacaagatgaaggagagacttgt 703
|||||| || ||||||||||||||||| ||||||||||| ||||||||||||||| | ||
Sbjct: 582 tatcaaagacggtcttcaagttgatcccaagaagtaccataagatgaaggagagattggt 641
Query: 704 tggtgtctctgaggaaactaccactggtgttaagaggctttaccagatgcagcaaaatgg 763
||||||||||||||| ||||| |||||||||||||||||||| ||||||||| | | |||
Sbjct: 642 tggtgtctctgaggagactactactggtgttaagaggctttatcagatgcaggagactgg 701
Query: 764 aactcttttgttccctgccattaacgttaacgactctgtcaccaagagcaagttcgacaa 823
| |||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct: 702 agctctcttgttccctgccattaacgtcaatgactctgtcaccaagagcaagtttgacaa 761
Query: 824 cttgtatggttgccgtcactcactccctgatggtctcatgagggccactgatgtcatgat 883
|||||| || ||||| ||||| || || ||||||||||||||||| |||||||| |||||
Sbjct: 762 cttgtacggatgccgacactcgcttcccgatggtctcatgagggctactgatgttatgat 821
Query: 884 cgctggaaaggttgctgttatctgtggatatggtgatgttggaaagggttgtgctgctgc 943
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct: 822 tgctggaaaggttgctgttatctgtggttatggtgatgtaggaaaaggttgtgctgcagc 881
Query: 944 catgaagactgctggtgctagagtcattgtgactgagattgatcccatctgtgcccttca 1003
||||| || || |||||| | ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 882 aatgaaaaccgcgggtgctcgtgtcatagtgactgagattgatccaatctgtgctcttca 941
Query: 1004 agctttgatggaaggacttcaggttcttacccttgaggatgttgtctcagaagctgatat 1063
||| | |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 942 ggctcttatggaaggtcttcaagttctgacccttgaggatgttgtctcagaagctgatat 1001
Query: 1064 ctt-tgtcaccaccaccggtaacaaagacatcatcatggtcgaccacatgaggaagatga 1122
||| ||| ||||| || ||||||||||| || || ||||| || ||||||||||||||||
Sbjct: 1002 cttctgt-accactactggtaacaaagatattattatggttgatcacatgaggaagatga 1060
Query: 1123 agaacaacgctattgtgtgcaacattggtcactttgacaatgagattgacatgcttggac 1182
||||||| || ||||| || ||||||||||| ||||||||||| || |||||||||||||
Sbjct: 1061 agaacaatgccattgtctgtaacattggtcattttgacaatgaaatcgacatgcttggac 1120
Query: 1183 ttgagacttaccctggtgtgaagcgtatcaccatcaagccacagactgacaggtgggtgt 1242
||||||| |||||||||||||| ||||| ||||||||||||||||| || ||||||||||
Sbjct: 1121 ttgagacctaccctggtgtgaaacgtattaccatcaagccacagaccgataggtgggtgt 1180
Query: 1243 tcccagagaccaaggctggaatcattgtcttggctgagggtcgtctgatgaacttgggtt 1302
| || || ||||| |||| |||||||| | ||||| |||||| ||||||||||||| |
Sbjct: 1181 ttcctgataccaactctggcatcattgttctagctgaaggtcgtttgatgaacttgggat 1240
Query: 1303 gtgccactggtcacccaagtttcgtgatgtcttgctctttcaccaaccaggtgattgccc 1362
| |||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 1241 gcgccactggacacccgagtttcgtgatgtcgtgctcattcaccaaccaggtgattgcac 1300
Query: 1363 agctcgagctctggaacgagaaagcaagcggaaagtacgagaagaaggtgtacgttcttc 1422
|||| ||||||||||||||||| ||||||| ||||| ||||||||||| || ||| | |
Sbjct: 1301 agcttgagctctggaacgagaagtcaagcgggaagtatgagaagaaggtctatgttttgc 1360
Query: 1423 ccaagcatttggatgagaaggttgcattacttcacttgggcaagcttggagccaggctta 1482
| || || |||||||||||||| || ||||||||| ||||||||||| || || || |
Sbjct: 1361 ctaaacacttggatgagaaggtagctgcacttcacttaggcaagcttggtgcaagactca 1420
Query: 1483 caaagctgtcaaaggaccaatctgactacgtcagcattccaattgagggaccatacaagc 1542
| ||||| | ||||||||||||||||| |||||||| || |||| || || |||||||
Sbjct: 1421 ccaagcttaccaaggaccaatctgactatgtcagcatacccgttgaaggtccttacaagc 1480
Query: 1543 ctcctcactacaggtactgagag 1565
|| |||||||||||||||||||
Sbjct: 1481 ctgttcactacaggtactgagag 1503
Score = 46.1 bits (23), Expect = 0.001
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 1647 tgagatattggtcttctgatgaagttgaccaaatatcagtattaataaggg 1697
||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct: 1604 tgagatattggtcttctgatgcgtgtgaccaaatattggtatgaataaggg 1654
>At4g25640.1 68417.m03692 MATE efflux family protein similar to ripening
regulated protein DDTFR18 [Lycopersicon esculentum]
GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 1790
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 49 ctctctctctctctctctgcctc 71
|||||||||||||||||||||||
Sbjct: 38 ctctctctctctctctctgcctc 16
Score = 36.2 bits (18), Expect = 1.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 49 ctctctctctctctctct 66
||||||||||||||||||
Sbjct: 40 ctctctctctctctctct 23
Score = 34.2 bits (17), Expect = 4.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 50 tctctctctctctctct 66
|||||||||||||||||
Sbjct: 41 tctctctctctctctct 25
>At5g48385.1 68418.m05980 expressed protein
Length = 2233
Score = 44.1 bits (22), Expect = 0.004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ctctctctctctctctctgcct 70
||||||||||||||||||||||
Sbjct: 44 ctctctctctctctctctgcct 65
Score = 34.2 bits (17), Expect = 4.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 50 tctctctctctctctct 66
|||||||||||||||||
Sbjct: 43 tctctctctctctctct 59
>At5g15080.1 68418.m01767 protein kinase, putative similar to protein kinase
APK1A [Arabidopsis thaliana] Swiss-Prot:Q06548
Length = 2001
Score = 44.1 bits (22), Expect = 0.004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ctctctctctctctctctgcct 70
||||||||||||||||||||||
Sbjct: 44 ctctctctctctctctctgcct 65
Score = 36.2 bits (18), Expect = 1.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 49 ctctctctctctctctct 66
||||||||||||||||||
Sbjct: 42 ctctctctctctctctct 59
Score = 34.2 bits (17), Expect = 4.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 50 tctctctctctctctct 66
|||||||||||||||||
Sbjct: 41 tctctctctctctctct 57
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 83,332
Number of Sequences: 29161
Number of extensions: 83332
Number of successful extensions: 8859
Number of sequences better than 10.0: 485
length of query: 1914
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1896
effective length of database: 43,533,334
effective search space: 82539201264
effective search space used: 82539201264
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)